Wall clock time and date at job start Mon Mar 30 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47341 * 2 1 4 4 C 1.50699 * 109.47274 * 120.00417 * 2 1 3 5 5 H 1.08001 * 120.00187 * 119.99612 * 4 2 1 6 6 C 1.37881 * 120.00187 * 299.99795 * 4 2 1 7 7 N 1.31509 * 119.99528 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00150 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46967 * 59.99964 * 8 6 4 10 10 H 1.48498 * 109.47156 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47201 * 300.00097 * 8 6 4 12 12 N 1.46905 * 109.47168 * 240.00419 * 2 1 3 13 13 C 1.46897 * 111.00106 * 183.95472 * 12 2 1 14 14 C 1.46897 * 111.00047 * 59.99790 * 12 2 1 15 15 C 1.50699 * 109.47321 * 190.00145 * 14 12 2 16 16 C 1.38368 * 119.92919 * 269.98140 * 15 14 12 17 17 C 1.38318 * 120.28333 * 180.02562 * 16 15 14 18 18 C 1.37994 * 120.14532 * 359.69572 * 17 16 15 19 19 C 1.39513 * 119.85328 * 0.57858 * 18 17 16 20 20 C 1.43203 * 120.14228 * 179.72355 * 19 18 17 21 21 C 7.68963 * 74.66979 * 233.67986 * 2 1 3 22 22 C 8.92137 * 70.28408 * 230.06453 * 2 1 3 23 23 N 1.46906 * 109.47076 * 153.54466 * 22 21 20 24 24 C 1.37955 * 119.92866 * 90.00301 * 15 14 12 25 25 H 1.09000 * 109.47393 * 59.99719 * 1 2 3 26 26 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46853 * 299.99592 * 1 2 3 28 28 H 0.97004 * 120.00002 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47246 * 296.04313 * 13 12 2 30 30 H 1.08994 * 109.47345 * 56.04654 * 13 12 2 31 31 H 1.09006 * 109.46964 * 176.04343 * 13 12 2 32 32 H 1.09006 * 109.47069 * 70.00214 * 14 12 2 33 33 H 1.08998 * 109.47265 * 310.00586 * 14 12 2 34 34 H 1.07994 * 119.85616 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.92562 * 179.97438 * 17 16 15 36 36 H 1.08005 * 120.07241 * 180.28340 * 18 17 16 37 37 H 1.08992 * 109.46866 * 33.54239 * 22 21 20 38 38 H 1.09004 * 109.47173 * 273.54369 * 22 21 20 39 39 H 1.00897 * 110.99706 * 179.97438 * 23 22 21 40 40 H 1.00899 * 110.99484 * 303.95694 * 23 22 21 41 41 H 1.08003 * 120.07063 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.8064 -1.1212 4.0080 10 1 1.8260 -0.4210 5.2204 11 1 1.8258 -2.5205 4.0076 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8578 -0.8909 -3.6160 16 6 3.0635 -0.7463 -4.2792 17 6 3.3548 -1.5357 -5.3771 18 6 2.4459 -2.4776 -5.8140 19 6 1.2260 -2.6244 -5.1532 20 6 0.2758 -3.5959 -5.6050 21 6 -0.5031 -4.3925 -5.9752 22 6 -1.4798 -5.3911 -6.4396 23 7 -0.7821 -6.4512 -7.1796 24 6 0.9380 -1.8246 -4.0465 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1606 3.4845 29 1 3.9192 0.2044 -1.2301 30 1 3.8069 -1.2915 -0.2721 31 1 3.8163 -1.3721 -2.0502 32 1 2.0518 0.9347 -2.5280 33 1 0.4722 0.1326 -2.3564 34 1 3.7799 -0.0134 -3.9388 35 1 4.2975 -1.4176 -5.8907 36 1 2.6764 -3.0965 -6.6686 37 1 -2.2079 -4.9106 -7.0930 38 1 -1.9925 -5.8245 -5.5809 39 1 -1.4314 -7.1498 -7.5088 40 1 -0.2463 -6.0665 -7.9432 41 1 -0.0030 -1.9360 -3.5284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063088483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:00 Heat of formation + Delta-G solvation = 60.170678 kcal Electronic energy + Delta-G solvation = -19770.325725 eV Core-core repulsion = 16843.491294 eV Total energy + Delta-G solvation = -2926.834432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55939 -38.50309 -36.57255 -35.06790 -33.98623 -32.56708 -31.26896 -30.70442 -28.44597 -26.60031 -26.46618 -24.98208 -23.65542 -22.53133 -21.17295 -18.80267 -18.23149 -17.43775 -17.13123 -16.78365 -16.40471 -15.89485 -15.79637 -15.51387 -15.44561 -15.03649 -14.59899 -14.22034 -14.00055 -13.90679 -13.68432 -13.46158 -12.94742 -12.84635 -12.71437 -12.60775 -12.34232 -12.22053 -12.08605 -11.91329 -11.77478 -11.59264 -11.16760 -10.90210 -10.52576 -9.82093 -9.75858 -9.30680 -8.92013 -8.11613 -6.23426 -0.03199 0.43659 1.42190 1.44224 1.51619 1.52270 1.91814 2.42304 2.91821 3.08517 3.16794 3.54149 3.83834 3.89508 3.99594 4.17140 4.25587 4.35554 4.46470 4.49127 4.55453 4.65213 4.70637 4.71871 4.77059 4.92462 5.00151 5.06831 5.09718 5.11972 5.25564 5.46352 5.48784 5.51123 5.67561 5.71560 5.77994 6.00451 6.07751 6.24991 6.38742 6.49685 6.58247 6.71486 6.90725 7.45548 8.94180 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.003687 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.162313 B = 7592.142740 C = 8299.778609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.034 1.034 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.541 5.541 13 C 0.040 3.960 14 C 0.088 3.912 15 C -0.072 4.072 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.102 4.102 19 C -0.004 4.004 20 C -0.158 4.158 21 C -0.163 4.163 22 C 0.176 3.824 23 N -0.857 5.857 24 C -0.091 4.091 25 H 0.031 0.969 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.262 0.738 29 H 0.012 0.988 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.365 0.635 40 H 0.350 0.650 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -7.845 -20.284 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 H -0.017 1.017 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.265 5.265 13 C -0.108 4.108 14 C -0.040 4.040 15 C -0.073 4.073 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.004 4.004 20 C -0.160 4.160 21 C -0.164 4.164 22 C 0.047 3.953 23 N -0.391 5.391 24 C -0.110 4.110 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.210 -8.354 -19.441 21.161 hybrid contribution -0.201 1.058 0.491 1.184 sum -0.411 -7.296 -18.949 20.310 Atomic orbital electron populations 1.21686 0.97408 0.99144 0.99822 1.19047 0.92595 0.90288 0.87031 1.01656 1.21404 1.31248 1.12326 0.90968 0.92340 1.25701 0.95347 0.95755 1.01853 1.70006 1.37665 1.24177 1.24142 0.85588 0.78782 0.78627 0.78503 1.19569 1.20862 1.19870 1.62082 1.10565 1.52374 1.01481 1.22235 0.87710 0.98989 1.01871 1.21096 1.00956 0.93782 0.88129 1.19717 0.94918 0.96940 0.95716 1.21393 0.95684 0.99978 0.95624 1.21333 1.00286 0.94879 0.96275 1.21385 0.91973 0.98645 0.99967 1.16043 0.93125 0.94739 0.96537 1.19620 0.97074 0.97929 1.01350 1.22869 0.97507 0.96590 0.99405 1.18829 0.89992 0.87537 0.98990 1.58559 1.31426 1.15860 1.33207 1.21034 0.99737 0.94986 0.95255 0.94986 0.95247 0.91977 0.92889 0.96950 0.92394 0.90977 0.94648 0.90553 0.84855 0.82262 0.83898 0.90492 0.87681 0.81953 0.83726 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.76 71.98 0.63 -5.52 16 2 C 0.22 11.31 2.06 44.16 0.09 11.40 16 3 H -0.03 -1.96 8.14 -2.39 -0.02 -1.97 16 4 C -0.52 -29.22 7.88 25.60 0.20 -29.02 16 5 H 0.06 3.27 6.41 -2.91 -0.02 3.25 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.54 -23.89 4.61 -906.06 -4.18 -28.07 16 13 C 0.04 1.61 8.86 127.69 1.13 2.74 16 14 C 0.09 3.27 4.93 85.56 0.42 3.69 16 15 C -0.07 -2.32 4.88 -19.90 -0.10 -2.42 16 16 C -0.11 -2.85 7.96 22.32 0.18 -2.68 16 17 C -0.11 -2.40 10.03 22.23 0.22 -2.17 16 18 C -0.10 -2.43 9.75 22.52 0.22 -2.21 16 19 C 0.00 -0.13 5.72 -21.41 -0.12 -0.25 16 20 C -0.16 -4.56 13.24 30.02 0.40 -4.16 16 21 C -0.16 -4.03 13.60 31.13 0.42 -3.61 16 22 C 0.18 2.75 7.26 84.50 0.61 3.36 16 23 N -0.86 -11.63 9.60 -194.72 -1.87 -13.50 16 24 C -0.09 -2.96 9.40 22.52 0.21 -2.75 16 25 H 0.03 1.41 6.20 -2.39 -0.01 1.39 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 2.52 6.10 -2.39 -0.01 2.50 16 31 H 0.07 2.49 6.17 -2.38 -0.01 2.48 16 32 H 0.04 1.28 8.06 -2.38 -0.02 1.26 16 33 H 0.08 2.90 5.77 -2.39 -0.01 2.88 16 34 H 0.13 3.16 8.03 -2.91 -0.02 3.14 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.36 2.85 9.08 -89.70 -0.81 2.04 16 40 H 0.35 4.19 8.97 -89.69 -0.80 3.38 16 41 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -66.32 340.07 0.62 -65.69 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.57 Total: 15.35 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 4.97 Total: -32.47 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.81 Total: -94.84 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.32 0.62 -65.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063088483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.864 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds