Wall clock time and date at job start Mon Mar 30 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.38375 * 119.92496 * 269.72524 * 15 14 12 17 17 C 1.38319 * 120.28129 * 179.72655 * 16 15 14 18 18 C 1.37988 * 120.14712 * 0.54738 * 17 16 15 19 19 C 1.39524 * 119.85502 * 359.72772 * 18 17 16 20 20 C 1.43197 * 120.14188 * 179.97438 * 19 18 17 21 21 C 7.68994 * 131.40189 * 87.30156 * 2 1 3 22 22 C 8.92186 * 135.91922 * 82.77745 * 2 1 3 23 23 N 1.46904 * 109.47131 * 347.65925 * 22 21 20 24 24 C 1.37946 * 119.93032 * 90.00194 * 15 14 12 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 30 30 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 32 32 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 33 33 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 34 34 H 1.07998 * 119.85401 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.92569 * 180.27988 * 17 16 15 36 36 H 1.07995 * 120.07965 * 179.74890 * 18 17 16 37 37 H 1.08998 * 109.46968 * 107.65538 * 22 21 20 38 38 H 1.08997 * 109.46792 * 227.66098 * 22 21 20 39 39 H 1.00895 * 110.99677 * 56.04461 * 23 22 21 40 40 H 1.00900 * 110.99928 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.07358 * 359.97225 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.7803 -1.5818 4.3210 17 6 2.4363 -2.1382 5.4042 18 6 3.6773 -1.6662 5.7800 19 6 4.2728 -0.6292 5.0613 20 6 5.5602 -0.1342 5.4462 21 6 6.6156 0.2716 5.7617 22 6 7.9391 0.7803 6.1574 23 7 8.7906 -0.3419 6.5742 24 6 3.6081 -0.0759 3.9659 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 1.8764 -2.6150 0.3648 30 1 1.9053 -2.5654 2.1441 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0872 2.3124 33 1 0.5722 -0.0344 2.5726 34 1 0.8070 -1.9515 4.0338 35 1 1.9743 -2.9410 5.9597 36 1 4.1867 -2.0987 6.6284 37 1 8.3996 1.2913 5.3119 38 1 7.8268 1.4787 6.9867 39 1 8.8576 -1.0353 5.8443 40 1 9.7052 -0.0183 6.8512 41 1 4.0639 0.7268 3.4053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063088484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:03 Heat of formation + Delta-G solvation = 78.516949 kcal Electronic energy + Delta-G solvation = -19765.661094 eV Core-core repulsion = 16839.622216 eV Total energy + Delta-G solvation = -2926.038878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.39140 -37.03481 -35.76733 -33.44888 -32.67821 -31.27265 -30.08876 -28.41072 -26.65963 -25.68372 -25.16163 -23.68292 -22.60721 -21.18435 -19.26126 -17.66341 -16.54849 -16.14224 -15.77393 -15.37659 -15.20412 -15.02870 -14.57539 -14.27886 -13.77068 -13.52873 -13.31630 -13.14227 -12.72778 -12.53211 -12.41062 -11.62105 -11.37906 -11.16097 -11.11207 -10.95666 -10.76507 -10.69942 -10.58479 -10.44438 -10.26201 -10.01626 -9.80361 -9.09574 -8.92185 -8.61253 -8.38890 -8.29545 -7.14246 -6.01120 -4.04815 1.03512 1.55049 2.55991 2.95275 3.32680 3.36757 3.40055 3.95562 4.08097 4.42429 4.47018 5.00971 5.02796 5.12502 5.18435 5.23115 5.29266 5.32724 5.39028 5.55641 5.67384 5.90764 6.04426 6.19341 6.21600 6.29925 6.40552 6.53516 6.57733 6.65757 6.67216 6.79987 6.86641 6.90833 7.02780 7.08931 7.11592 7.47707 7.53756 7.71652 7.82881 8.11083 8.37733 8.58925 9.00879 9.60128 11.05981 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.003744 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.256533 B = 7476.506950 C = 8388.487708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.087 3.913 15 C -0.059 4.059 16 C -0.103 4.103 17 C -0.123 4.123 18 C -0.103 4.103 19 C 0.003 3.997 20 C -0.110 4.110 21 C -0.180 4.180 22 C 0.180 3.820 23 N -0.849 5.849 24 C -0.073 4.073 25 H 0.031 0.969 26 H 0.007 0.993 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.018 0.982 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.347 0.653 40 H 0.348 0.652 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -2.015 16.473 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.117 4.117 14 C -0.041 4.041 15 C -0.060 4.060 16 C -0.121 4.121 17 C -0.141 4.141 18 C -0.121 4.121 19 C 0.003 3.997 20 C -0.112 4.112 21 C -0.180 4.180 22 C 0.050 3.950 23 N -0.380 5.380 24 C -0.092 4.092 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.172 -2.000 16.854 18.426 hybrid contribution -0.035 -0.143 -1.680 1.686 sum 7.137 -2.144 15.175 16.905 Atomic orbital electron populations 1.22412 1.00862 0.99396 1.00561 1.19330 0.89765 0.94557 0.85862 0.94286 1.21085 1.30609 1.12514 0.89653 0.91981 1.24924 0.95228 0.95136 0.98977 1.69876 1.37017 1.23059 1.23498 0.86581 0.79241 0.79604 0.82095 1.21396 1.20236 1.20369 1.62396 1.59472 1.02000 1.01364 1.22303 0.97004 0.91232 1.01202 1.21051 0.96218 0.98037 0.88782 1.19933 0.94448 0.95683 0.95892 1.21224 1.00085 0.95855 0.94967 1.20974 0.95066 1.00362 0.97673 1.21074 0.95463 0.96099 0.99451 1.15875 0.89337 0.97516 0.96970 1.19297 0.92985 0.98270 1.00610 1.21923 0.94829 1.01050 1.00222 1.18585 0.84934 0.92253 0.99190 1.58632 1.18082 1.14880 1.46391 1.21096 0.93950 0.99550 0.94602 0.95033 0.97359 0.89311 0.92957 0.90935 0.93594 0.96390 0.90607 0.94427 0.86020 0.85860 0.86102 0.92821 0.88722 0.84009 0.83848 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.28 37.16 0.31 -3.83 16 2 C 0.21 5.26 2.34 -68.87 -0.16 5.10 16 3 H 0.04 1.07 8.03 -51.92 -0.42 0.65 16 4 C -0.50 -13.65 7.94 -34.44 -0.27 -13.92 16 5 H 0.06 1.70 6.75 -52.49 -0.35 1.35 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.34 4.73 -237.73 -1.13 -12.46 16 13 C 0.03 0.61 8.55 60.06 0.51 1.13 16 14 C 0.09 1.58 4.55 -4.98 -0.02 1.56 16 15 C -0.06 -0.94 4.88 -104.68 -0.51 -1.45 16 16 C -0.10 -1.44 7.90 -39.50 -0.31 -1.75 16 17 C -0.12 -1.53 10.03 -39.64 -0.40 -1.93 16 18 C -0.10 -1.35 9.75 -39.19 -0.38 -1.73 16 19 C 0.00 0.05 5.72 -107.00 -0.61 -0.57 16 20 C -0.11 -1.62 13.24 -38.84 -0.51 -2.13 16 21 C -0.18 -2.33 13.60 -37.12 -0.50 -2.83 16 22 C 0.18 1.61 7.26 -6.61 -0.05 1.56 16 23 N -0.85 -6.84 9.60 -12.90 -0.12 -6.96 16 24 C -0.07 -1.16 9.40 -39.19 -0.37 -1.53 16 25 H 0.03 0.73 6.38 -51.93 -0.33 0.40 16 26 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 30 H 0.05 0.80 5.90 -51.93 -0.31 0.50 16 31 H 0.02 0.35 6.28 -51.93 -0.33 0.02 16 32 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 33 H 0.04 0.67 6.88 -51.93 -0.36 0.31 16 34 H 0.12 1.57 8.00 -52.49 -0.42 1.15 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.35 2.72 8.97 -39.29 -0.35 2.36 16 40 H 0.35 1.83 9.08 -39.29 -0.36 1.47 16 41 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -29.95 337.60 -9.82 -39.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.89 Total: 3.83 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -3.38 Total: -20.83 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.62 Total: -44.19 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.95 -9.82 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063088484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.287 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds