Wall clock time and date at job start Mon Mar 30 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.38375 * 119.92496 * 269.72524 * 15 14 12 17 17 C 1.38319 * 120.28129 * 179.72655 * 16 15 14 18 18 C 1.37988 * 120.14712 * 0.54738 * 17 16 15 19 19 C 1.39524 * 119.85502 * 359.72772 * 18 17 16 20 20 C 1.43197 * 120.14188 * 179.97438 * 19 18 17 21 21 C 7.68994 * 131.40189 * 87.30156 * 2 1 3 22 22 C 8.92186 * 135.91922 * 82.77745 * 2 1 3 23 23 N 1.46904 * 109.47131 * 347.65925 * 22 21 20 24 24 C 1.37946 * 119.93032 * 90.00194 * 15 14 12 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 30 30 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 32 32 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 33 33 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 34 34 H 1.07998 * 119.85401 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.92569 * 180.27988 * 17 16 15 36 36 H 1.07995 * 120.07965 * 179.74890 * 18 17 16 37 37 H 1.08998 * 109.46968 * 107.65538 * 22 21 20 38 38 H 1.08997 * 109.46792 * 227.66098 * 22 21 20 39 39 H 1.00895 * 110.99677 * 56.04461 * 23 22 21 40 40 H 1.00900 * 110.99928 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.07358 * 359.97225 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.7803 -1.5818 4.3210 17 6 2.4363 -2.1382 5.4042 18 6 3.6773 -1.6662 5.7800 19 6 4.2728 -0.6292 5.0613 20 6 5.5602 -0.1342 5.4462 21 6 6.6156 0.2716 5.7617 22 6 7.9391 0.7803 6.1574 23 7 8.7906 -0.3419 6.5742 24 6 3.6081 -0.0759 3.9659 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 1.8764 -2.6150 0.3648 30 1 1.9053 -2.5654 2.1441 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0872 2.3124 33 1 0.5722 -0.0344 2.5726 34 1 0.8070 -1.9515 4.0338 35 1 1.9743 -2.9410 5.9597 36 1 4.1867 -2.0987 6.6284 37 1 8.3996 1.2913 5.3119 38 1 7.8268 1.4787 6.9867 39 1 8.8576 -1.0353 5.8443 40 1 9.7052 -0.0183 6.8512 41 1 4.0639 0.7268 3.4053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063088484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:02 Heat of formation + Delta-G solvation = 59.651510 kcal Electronic energy + Delta-G solvation = -19766.479161 eV Core-core repulsion = 16839.622216 eV Total energy + Delta-G solvation = -2926.856944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58256 -38.66174 -36.57309 -35.03261 -33.99238 -32.65359 -31.14923 -30.18106 -28.16988 -27.19298 -26.46931 -25.28190 -23.65381 -22.49028 -21.01857 -18.72193 -18.15412 -17.43280 -17.03719 -16.75936 -16.49967 -16.11319 -15.77809 -15.56548 -15.10916 -14.99319 -14.57693 -14.38715 -14.09143 -13.89535 -13.62467 -13.39713 -12.91885 -12.85939 -12.63095 -12.61986 -12.39431 -12.29678 -12.11981 -11.94931 -11.73887 -11.63434 -11.23204 -10.92179 -10.49521 -9.78122 -9.73193 -9.37656 -8.83203 -8.11002 -6.21944 -0.04405 0.43628 1.42449 1.43878 1.51503 1.55153 1.90264 2.42858 2.92667 3.07814 3.18080 3.57605 3.82500 3.89704 3.99891 4.17173 4.26230 4.36881 4.45371 4.52200 4.57038 4.65366 4.67524 4.71406 4.80891 4.87023 4.90479 5.06724 5.11289 5.14424 5.20154 5.46692 5.50575 5.54447 5.66573 5.72045 5.79639 6.00441 6.05047 6.18944 6.47982 6.48413 6.56768 6.72612 6.91397 7.47218 8.94904 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.003744 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.256533 B = 7476.506950 C = 8388.487708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.284 1.284 10 H -0.275 1.275 11 H -0.270 1.270 12 N -0.542 5.542 13 C 0.039 3.961 14 C 0.093 3.907 15 C -0.073 4.073 16 C -0.106 4.106 17 C -0.110 4.110 18 C -0.101 4.101 19 C -0.005 4.005 20 C -0.159 4.159 21 C -0.164 4.164 22 C 0.175 3.825 23 N -0.856 5.856 24 C -0.092 4.092 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.348 0.652 40 H 0.364 0.636 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -3.467 18.039 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.196 1.196 12 N -0.265 5.265 13 C -0.110 4.110 14 C -0.035 4.035 15 C -0.074 4.074 16 C -0.125 4.125 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.005 4.005 20 C -0.160 4.160 21 C -0.165 4.165 22 C 0.046 3.954 23 N -0.389 5.389 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.861 -3.456 18.442 20.343 hybrid contribution -0.153 0.340 -2.044 2.077 sum 7.707 -3.117 16.398 18.386 Atomic orbital electron populations 1.22199 1.00095 0.99354 1.00134 1.19073 0.90211 0.92849 0.87028 0.97737 1.21358 1.30682 1.12504 0.90958 0.92629 1.25680 0.95390 0.95807 1.01777 1.70006 1.37826 1.24155 1.24071 0.85609 0.78631 0.78754 0.78614 1.20937 1.19997 1.19563 1.62251 1.59965 1.02845 1.01438 1.22242 0.97179 0.90087 1.01447 1.20984 0.96830 0.97352 0.88309 1.19740 0.94707 0.97119 0.95805 1.21400 1.00678 0.95163 0.95220 1.21338 0.94375 1.00326 0.96759 1.21393 0.95762 0.95235 0.99543 1.16039 0.89683 0.98016 0.96793 1.19630 0.93875 1.00034 1.02478 1.22870 0.95398 0.99529 0.98684 1.18839 0.83304 0.92718 1.00510 1.58603 1.19131 1.14706 1.46421 1.21047 0.94419 1.00001 0.95556 0.94695 0.95400 0.92009 0.92954 0.92888 0.91105 0.95973 0.91745 0.93814 0.84627 0.82254 0.84094 0.91113 0.86998 0.83954 0.81977 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 8.28 71.98 0.60 -7.08 16 2 C 0.22 11.04 2.34 44.17 0.10 11.15 16 3 H 0.00 0.27 8.03 -2.38 -0.02 0.25 16 4 C -0.52 -28.74 7.94 25.60 0.20 -28.54 16 5 H 0.06 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.24 11.32 21.45 0.24 -52.99 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.54 -23.52 4.73 -906.03 -4.29 -27.81 16 13 C 0.04 1.50 8.55 127.69 1.09 2.59 16 14 C 0.09 3.40 4.55 85.56 0.39 3.79 16 15 C -0.07 -2.32 4.88 -19.90 -0.10 -2.42 16 16 C -0.11 -2.75 7.90 22.32 0.18 -2.57 16 17 C -0.11 -2.40 10.03 22.23 0.22 -2.18 16 18 C -0.10 -2.45 9.75 22.52 0.22 -2.23 16 19 C -0.01 -0.16 5.72 -21.40 -0.12 -0.28 16 20 C -0.16 -4.61 13.24 30.01 0.40 -4.22 16 21 C -0.16 -4.10 13.60 31.13 0.42 -3.67 16 22 C 0.18 2.78 7.26 84.50 0.61 3.40 16 23 N -0.86 -12.01 9.60 -194.71 -1.87 -13.88 16 24 C -0.09 -2.96 9.40 22.52 0.21 -2.74 16 25 H 0.03 1.62 6.38 -2.39 -0.02 1.60 16 26 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 27 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.05 2.25 6.53 -2.39 -0.02 2.23 16 30 H 0.07 2.37 5.90 -2.39 -0.01 2.36 16 31 H 0.02 0.83 6.28 -2.39 -0.01 0.81 16 32 H 0.06 2.45 7.94 -2.38 -0.02 2.43 16 33 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 34 H 0.14 3.11 8.00 -2.91 -0.02 3.09 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.35 4.86 8.97 -89.70 -0.80 4.05 16 40 H 0.36 2.99 9.08 -89.69 -0.81 2.18 16 41 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -65.16 337.60 0.43 -64.74 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.57 Total: 17.75 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 4.88 Total: -33.89 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -5.91 Total: -94.69 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.16 0.43 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063088484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.389 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds