Wall clock time and date at job start Mon Mar 30 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46837 * 2 1 4 4 O 1.42891 * 109.47117 * 120.00311 * 2 1 3 5 5 C 1.42903 * 114.00442 * 90.00356 * 4 2 1 6 6 C 1.52998 * 109.47363 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47019 * 54.99521 * 6 5 4 8 8 O 1.42902 * 109.47036 * 294.99477 * 6 5 4 9 9 C 1.53002 * 109.47158 * 174.99535 * 6 5 4 10 10 N 1.46893 * 109.47024 * 184.10561 * 9 6 5 11 11 C 1.46899 * 111.00173 * 283.47834 * 10 9 6 12 12 C 1.53244 * 109.34254 * 187.25469 * 11 10 9 13 13 N 1.47086 * 108.51972 * 306.17373 * 12 11 10 14 14 C 1.36935 * 120.88041 * 231.18508 * 13 12 11 15 15 H 1.07996 * 119.99813 * 32.70947 * 14 13 12 16 16 C 1.38811 * 119.99636 * 212.43146 * 14 13 12 17 17 N 1.31622 * 120.00207 * 12.44375 * 16 14 13 18 18 Si 1.86797 * 119.99777 * 192.43634 * 16 14 13 19 19 H 1.48504 * 109.47021 * 90.00240 * 18 16 14 20 20 H 1.48499 * 109.47422 * 210.00283 * 18 16 14 21 21 H 1.48499 * 109.47371 * 330.00388 * 18 16 14 22 22 C 1.47081 * 118.23617 * 51.45798 * 13 12 11 23 23 C 1.46901 * 111.00344 * 47.78494 * 10 9 6 24 24 H 1.08994 * 109.46688 * 299.99508 * 1 2 3 25 25 H 1.08995 * 109.47308 * 59.99697 * 1 2 3 26 26 H 1.08996 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46712 * 240.00583 * 2 1 3 28 28 H 1.08998 * 109.46934 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46789 * 300.00031 * 3 2 1 30 30 H 1.08994 * 109.47023 * 59.99946 * 3 2 1 31 31 H 1.08995 * 109.46867 * 59.99310 * 5 4 2 32 32 H 1.09000 * 109.46349 * 299.99714 * 5 4 2 33 33 H 0.96693 * 114.00097 * 300.00190 * 8 6 5 34 34 H 1.09005 * 109.46791 * 64.10611 * 9 6 5 35 35 H 1.08992 * 109.47195 * 304.10822 * 9 6 5 36 36 H 1.08997 * 109.49119 * 67.29991 * 11 10 9 37 37 H 1.09001 * 109.49526 * 307.21534 * 11 10 9 38 38 H 1.08990 * 109.63053 * 186.46676 * 12 11 10 39 39 H 1.08994 * 109.62620 * 65.87735 * 12 11 10 40 40 H 0.97003 * 119.99737 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.63443 * 68.24676 * 22 13 12 42 42 H 1.09003 * 109.62731 * 188.83319 * 22 13 12 43 43 H 1.09002 * 109.49029 * 292.70344 * 23 10 9 44 44 H 1.08999 * 109.48729 * 52.75617 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7092 -2.6925 2.2940 7 1 2.0211 -2.4479 3.1032 8 8 4.0039 -2.1674 2.5946 9 6 2.7980 -4.2124 2.1420 10 7 3.1922 -4.8105 3.4244 11 6 4.6280 -4.6248 3.6728 12 6 5.0333 -5.4139 4.9223 13 7 4.1535 -5.0159 6.0319 14 6 4.6744 -4.6289 7.2377 15 1 5.6220 -4.1123 7.2758 16 6 3.9816 -4.8956 8.4107 17 7 2.9592 -5.7245 8.3972 18 14 4.5004 -4.0782 10.0082 19 1 3.7744 -2.7922 10.1647 20 1 4.1764 -4.9716 11.1493 21 1 5.9627 -3.8210 9.9806 22 6 2.6994 -5.0505 5.8138 23 6 2.3863 -4.2700 4.5273 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 2.9320 -2.2466 0.1985 32 1 1.2539 -2.5433 0.7124 33 1 4.6687 -2.3479 1.9160 34 1 3.5402 -4.4588 1.3827 35 1 1.8266 -4.6048 1.8413 36 1 4.8364 -3.5662 3.8278 37 1 5.1953 -4.9858 2.8148 38 1 6.0688 -5.1892 5.1775 39 1 4.9232 -6.4816 4.7328 40 1 2.4754 -5.9111 9.2170 41 1 2.3694 -6.0839 5.7082 42 1 2.1913 -4.5854 6.6586 43 1 2.6259 -3.2163 4.6704 44 1 1.3277 -4.3733 4.2888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070099653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:14 Heat of formation + Delta-G solvation = -69.396810 kcal Electronic energy + Delta-G solvation = -22230.722943 eV Core-core repulsion = 18990.961124 eV Total energy + Delta-G solvation = -3239.761819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.35658 -38.16611 -36.31480 -33.99321 -32.95119 -31.46037 -29.80529 -29.69587 -27.50837 -26.73524 -24.31410 -22.88660 -22.34713 -21.63784 -21.09679 -18.91329 -17.33059 -16.55799 -16.30247 -16.22012 -15.15316 -14.95795 -14.67896 -14.33480 -14.22434 -13.88965 -13.39037 -13.26695 -13.19513 -12.80993 -12.74357 -12.46675 -12.33634 -11.85150 -11.66208 -11.52927 -11.19716 -11.08532 -10.94871 -10.81004 -10.70545 -10.60396 -10.31190 -10.01835 -9.84040 -9.73238 -9.70487 -9.49565 -8.42541 -7.58055 -6.48225 -5.70258 -3.17299 3.41250 3.43402 3.49465 3.51090 4.39398 4.50767 4.56906 4.60665 4.77196 4.86448 4.92954 5.06451 5.14636 5.24877 5.30833 5.32916 5.48208 5.52012 5.54371 5.57176 5.58931 5.83788 5.91756 5.95769 6.00279 6.05582 6.12566 6.30788 6.45419 6.50852 6.66132 6.79060 7.06150 7.09478 7.33997 7.63636 7.72673 7.74935 7.80583 7.90086 8.55963 9.30797 9.92462 10.54558 11.38305 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.003976 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.072013 B = 7040.836793 C = 7434.399155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.371 6.371 5 C 0.034 3.966 6 C 0.072 3.928 7 H 0.111 0.889 8 O -0.541 6.541 9 C 0.026 3.974 10 N -0.522 5.522 11 C 0.031 3.969 12 C 0.149 3.851 13 N -0.593 5.593 14 C -0.251 4.251 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.183 3.817 23 C 0.028 3.972 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.366 0.634 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 8.471 -19.243 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.290 6.290 5 C -0.044 4.044 6 C 0.011 3.989 7 H 0.128 0.872 8 O -0.345 6.345 9 C -0.103 4.103 10 N -0.245 5.245 11 C -0.098 4.098 12 C 0.022 3.978 13 N -0.316 5.316 14 C -0.381 4.381 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.549 5.549 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.056 3.944 23 C -0.101 4.101 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.212 0.788 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.615 8.191 -18.373 20.439 hybrid contribution 0.372 0.867 0.001 0.944 sum -3.243 9.059 -18.372 20.739 Atomic orbital electron populations 1.22307 0.96136 1.02322 1.02553 1.22084 0.93581 0.93948 0.88351 1.21849 1.01852 0.94563 1.02380 1.88052 1.86362 1.19668 1.34949 1.23333 0.99787 0.82497 0.98782 1.22875 0.86006 0.93606 0.96421 0.87174 1.86733 1.19095 1.80190 1.48476 1.22851 1.02006 0.90966 0.94505 1.62279 1.05293 1.55863 1.01054 1.22866 0.87383 1.00965 0.98617 1.20991 0.94082 0.95441 0.87273 1.44021 1.00831 1.77147 1.09628 1.19164 1.05867 1.29959 0.83128 0.91980 1.25176 0.99008 0.97529 0.97707 1.70001 1.22572 1.35426 1.26863 0.86280 0.78303 0.78754 0.83354 1.21453 1.21746 1.20425 1.20866 0.84956 0.96572 0.91957 1.23051 0.95380 0.98189 0.93446 0.91658 0.91814 0.92535 0.92601 0.91987 0.91488 0.91704 0.93396 0.92722 0.78786 0.91143 0.90369 0.92277 0.92909 0.92815 0.96182 0.93689 0.95649 0.90075 0.94484 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.53 37.16 0.35 -1.13 16 2 C 0.08 0.75 3.34 -26.73 -0.09 0.66 16 3 C -0.15 -1.28 9.56 37.16 0.36 -0.92 16 4 O -0.37 -4.76 9.95 -40.07 -0.40 -5.16 16 5 C 0.03 0.37 5.38 37.16 0.20 0.57 16 6 C 0.07 0.97 2.66 -26.73 -0.07 0.90 16 7 H 0.11 1.77 6.21 -51.93 -0.32 1.45 16 8 O -0.54 -8.11 10.48 -40.07 -0.42 -8.53 16 9 C 0.03 0.35 5.28 -3.83 -0.02 0.33 16 10 N -0.52 -9.37 4.83 -234.03 -1.13 -10.50 16 11 C 0.03 0.57 5.09 -3.70 -0.02 0.55 16 12 C 0.15 3.32 6.69 -3.60 -0.02 3.30 16 13 N -0.59 -15.67 3.01 -171.74 -0.52 -16.19 16 14 C -0.25 -7.19 9.59 -15.06 -0.14 -7.34 16 15 H 0.06 1.76 7.86 -52.49 -0.41 1.34 16 16 C 0.00 0.13 5.01 -17.43 -0.09 0.04 16 17 N -0.90 -27.01 11.29 55.49 0.63 -26.38 16 18 Si 0.90 22.36 29.57 -169.99 -5.03 17.33 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.18 4.58 5.38 -3.36 -0.02 4.56 16 23 C 0.03 0.57 4.57 -3.46 -0.02 0.56 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 27 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.05 0.54 7.87 -51.93 -0.41 0.13 16 33 H 0.37 4.08 9.04 45.56 0.41 4.49 16 34 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.16 5.80 -51.93 -0.30 0.85 16 37 H 0.05 0.83 7.92 -51.93 -0.41 0.41 16 38 H 0.05 1.16 7.95 -51.93 -0.41 0.75 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 2.24 6.41 -51.93 -0.33 1.91 16 43 H 0.04 0.80 6.60 -51.93 -0.34 0.46 16 44 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -32.45 341.35 -8.41 -40.86 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.11 Total: 1.34 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.42 Total: 2.09 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -1.02 Total: -53.07 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.82 Total: -13.69 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.45 -8.41 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070099653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.534 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds