Wall clock time and date at job start Mon Mar 30 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46837 * 2 1 4 4 O 1.42891 * 109.47117 * 120.00311 * 2 1 3 5 5 C 1.42903 * 114.00442 * 90.00356 * 4 2 1 6 6 C 1.52998 * 109.47363 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47019 * 54.99521 * 6 5 4 8 8 O 1.42902 * 109.47036 * 294.99477 * 6 5 4 9 9 C 1.53002 * 109.47158 * 174.99535 * 6 5 4 10 10 N 1.46893 * 109.47024 * 184.10561 * 9 6 5 11 11 C 1.46899 * 111.00173 * 283.47834 * 10 9 6 12 12 C 1.53244 * 109.34254 * 187.25469 * 11 10 9 13 13 N 1.47086 * 108.51972 * 306.17373 * 12 11 10 14 14 C 1.36935 * 120.88041 * 231.18508 * 13 12 11 15 15 H 1.07996 * 119.99813 * 32.70947 * 14 13 12 16 16 C 1.38811 * 119.99636 * 212.43146 * 14 13 12 17 17 N 1.31622 * 120.00207 * 12.44375 * 16 14 13 18 18 Si 1.86797 * 119.99777 * 192.43634 * 16 14 13 19 19 H 1.48504 * 109.47021 * 90.00240 * 18 16 14 20 20 H 1.48499 * 109.47422 * 210.00283 * 18 16 14 21 21 H 1.48499 * 109.47371 * 330.00388 * 18 16 14 22 22 C 1.47081 * 118.23617 * 51.45798 * 13 12 11 23 23 C 1.46901 * 111.00344 * 47.78494 * 10 9 6 24 24 H 1.08994 * 109.46688 * 299.99508 * 1 2 3 25 25 H 1.08995 * 109.47308 * 59.99697 * 1 2 3 26 26 H 1.08996 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46712 * 240.00583 * 2 1 3 28 28 H 1.08998 * 109.46934 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46789 * 300.00031 * 3 2 1 30 30 H 1.08994 * 109.47023 * 59.99946 * 3 2 1 31 31 H 1.08995 * 109.46867 * 59.99310 * 5 4 2 32 32 H 1.09000 * 109.46349 * 299.99714 * 5 4 2 33 33 H 0.96693 * 114.00097 * 300.00190 * 8 6 5 34 34 H 1.09005 * 109.46791 * 64.10611 * 9 6 5 35 35 H 1.08992 * 109.47195 * 304.10822 * 9 6 5 36 36 H 1.08997 * 109.49119 * 67.29991 * 11 10 9 37 37 H 1.09001 * 109.49526 * 307.21534 * 11 10 9 38 38 H 1.08990 * 109.63053 * 186.46676 * 12 11 10 39 39 H 1.08994 * 109.62620 * 65.87735 * 12 11 10 40 40 H 0.97003 * 119.99737 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.63443 * 68.24676 * 22 13 12 42 42 H 1.09003 * 109.62731 * 188.83319 * 22 13 12 43 43 H 1.09002 * 109.49029 * 292.70344 * 23 10 9 44 44 H 1.08999 * 109.48729 * 52.75617 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7092 -2.6925 2.2940 7 1 2.0211 -2.4479 3.1032 8 8 4.0039 -2.1674 2.5946 9 6 2.7980 -4.2124 2.1420 10 7 3.1922 -4.8105 3.4244 11 6 4.6280 -4.6248 3.6728 12 6 5.0333 -5.4139 4.9223 13 7 4.1535 -5.0159 6.0319 14 6 4.6744 -4.6289 7.2377 15 1 5.6220 -4.1123 7.2758 16 6 3.9816 -4.8956 8.4107 17 7 2.9592 -5.7245 8.3972 18 14 4.5004 -4.0782 10.0082 19 1 3.7744 -2.7922 10.1647 20 1 4.1764 -4.9716 11.1493 21 1 5.9627 -3.8210 9.9806 22 6 2.6994 -5.0505 5.8138 23 6 2.3863 -4.2700 4.5273 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 2.9320 -2.2466 0.1985 32 1 1.2539 -2.5433 0.7124 33 1 4.6687 -2.3479 1.9160 34 1 3.5402 -4.4588 1.3827 35 1 1.8266 -4.6048 1.8413 36 1 4.8364 -3.5662 3.8278 37 1 5.1953 -4.9858 2.8148 38 1 6.0688 -5.1892 5.1775 39 1 4.9232 -6.4816 4.7328 40 1 2.4754 -5.9111 9.2170 41 1 2.3694 -6.0839 5.7082 42 1 2.1913 -4.5854 6.6586 43 1 2.6259 -3.2163 4.6704 44 1 1.3277 -4.3733 4.2888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070099653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:13 Heat of formation + Delta-G solvation = -94.239755 kcal Electronic energy + Delta-G solvation = -22231.800214 eV Core-core repulsion = 18990.961124 eV Total energy + Delta-G solvation = -3240.839090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54233 -39.23867 -37.70739 -35.68665 -33.75251 -33.29126 -31.58274 -30.99170 -28.44743 -28.06405 -25.88802 -24.45130 -24.00625 -22.65693 -22.10102 -20.64578 -18.74318 -18.08767 -17.33206 -17.16977 -16.80829 -16.18359 -15.96361 -15.83994 -15.46017 -15.22445 -15.07833 -14.91067 -14.57564 -14.04740 -13.61672 -13.49815 -13.20078 -13.06951 -12.97765 -12.84515 -12.70076 -12.58618 -12.33885 -12.31061 -12.06859 -12.05253 -11.81004 -11.63871 -11.55652 -11.40623 -11.09333 -10.59351 -10.52430 -9.03426 -8.56430 -7.87280 -5.38893 1.44861 1.46618 1.55687 2.49859 2.61557 3.09384 3.28428 3.50792 3.72535 3.82440 3.98791 4.07411 4.16545 4.18508 4.28869 4.32968 4.38320 4.46734 4.47686 4.65901 4.72459 4.73100 4.78326 4.85602 4.87484 4.90269 4.92761 4.96324 5.04017 5.11155 5.26605 5.28143 5.31327 5.43850 5.61864 5.67917 6.20279 6.28511 6.38800 6.40785 6.86028 7.14706 7.84016 8.41053 9.18679 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.003976 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.072013 B = 7040.836793 C = 7434.399155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.404 6.404 5 C 0.040 3.960 6 C 0.077 3.923 7 H 0.078 0.922 8 O -0.566 6.566 9 C 0.031 3.969 10 N -0.532 5.532 11 C 0.045 3.955 12 C 0.142 3.858 13 N -0.613 5.613 14 C -0.268 4.268 15 H 0.061 0.939 16 C -0.048 4.048 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.190 3.810 23 C 0.050 3.950 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.382 0.618 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.011 0.989 40 H 0.251 0.749 41 H -0.001 1.001 42 H 0.046 0.954 43 H 0.021 0.979 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 9.168 -21.736 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.206 4.206 4 O -0.324 6.324 5 C -0.038 4.038 6 C 0.016 3.984 7 H 0.096 0.904 8 O -0.373 6.373 9 C -0.097 4.097 10 N -0.255 5.255 11 C -0.084 4.084 12 C 0.016 3.984 13 N -0.337 5.337 14 C -0.398 4.398 15 H 0.079 0.921 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.192 1.192 22 C 0.064 3.936 23 C -0.079 4.079 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.060 0.940 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.231 8.893 -20.916 22.957 hybrid contribution 0.280 0.640 0.708 0.995 sum -2.951 9.534 -20.208 22.538 Atomic orbital electron populations 1.22295 0.95498 1.02453 1.02856 1.22308 0.94156 0.94163 0.87960 1.21877 1.01508 0.94350 1.02860 1.88013 1.86819 1.20602 1.36947 1.23257 1.01058 0.81880 0.97590 1.22690 0.85138 0.93780 0.96764 0.90450 1.86692 1.20106 1.80573 1.49919 1.22935 1.03851 0.90602 0.92306 1.62177 1.04653 1.56652 1.02026 1.22673 0.88200 0.99660 0.97834 1.21175 0.93711 0.95523 0.87955 1.44305 1.01713 1.77555 1.10155 1.19483 1.05961 1.29895 0.84448 0.92093 1.25959 0.99217 0.98249 1.00930 1.70162 1.23683 1.36821 1.27432 0.85234 0.78384 0.77506 0.79112 1.21241 1.21709 1.19236 1.20623 0.84380 0.95291 0.93347 1.22633 0.96903 0.96121 0.92271 0.93105 0.89768 0.92484 0.90820 0.92529 0.89131 0.93108 0.90986 0.91280 0.76888 0.88064 0.88625 0.93182 0.89037 0.92654 0.97133 0.94030 0.98330 0.93580 0.96072 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.53 71.98 0.69 -1.90 16 2 C 0.07 1.20 3.34 30.60 0.10 1.31 16 3 C -0.15 -2.30 9.56 71.98 0.69 -1.61 16 4 O -0.40 -9.68 9.95 -144.35 -1.44 -11.12 16 5 C 0.04 0.76 5.38 71.98 0.39 1.14 16 6 C 0.08 1.93 2.66 30.59 0.08 2.01 16 7 H 0.08 2.46 6.21 -2.39 -0.01 2.44 16 8 O -0.57 -15.98 10.48 -144.35 -1.51 -17.50 16 9 C 0.03 0.74 5.28 86.31 0.46 1.19 16 10 N -0.53 -18.14 4.83 -894.33 -4.32 -22.46 16 11 C 0.05 1.58 5.09 86.39 0.44 2.02 16 12 C 0.14 6.33 6.69 86.35 0.58 6.90 16 13 N -0.61 -33.19 3.01 -697.25 -2.10 -35.29 16 14 C -0.27 -15.66 9.59 84.03 0.81 -14.86 16 15 H 0.06 3.50 7.86 -2.91 -0.02 3.48 16 16 C -0.05 -2.81 5.01 84.86 0.42 -2.38 16 17 N -0.94 -57.72 11.29 21.65 0.24 -57.47 16 18 Si 0.97 46.81 29.57 68.60 2.03 48.83 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.19 9.87 5.38 86.50 0.47 10.33 16 23 C 0.05 2.04 4.57 86.54 0.40 2.43 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 27 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 32 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 33 H 0.38 7.44 9.04 -74.06 -0.67 6.77 16 34 H 0.10 1.81 7.84 -2.38 -0.02 1.80 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.88 5.80 -2.39 -0.01 1.87 16 37 H 0.09 2.51 7.92 -2.39 -0.02 2.49 16 38 H 0.05 2.39 7.95 -2.39 -0.02 2.37 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.05 2.68 6.41 -2.39 -0.02 2.66 16 43 H 0.02 0.93 6.60 -2.39 -0.02 0.91 16 44 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 Total: -1.00 -72.58 341.35 -1.29 -73.87 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.29 Total: 14.55 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.51 Total: 6.59 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -6.17 Total: -115.23 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -2.95 Total: -28.62 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.58 -1.29 -73.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070099653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.374 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds