Wall clock time and date at job start Mon Mar 30 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00308 * 2 1 4 4 C 1.52996 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46964 * 63.73677 * 4 3 2 6 6 C 1.46908 * 110.99543 * 196.26744 * 5 4 3 7 7 C 1.50700 * 109.46906 * 66.05081 * 6 5 4 8 8 H 1.07999 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00131 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00128 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99791 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47260 * 89.99877 * 11 9 7 13 13 H 1.48499 * 109.47300 * 210.00251 * 11 9 7 14 14 H 1.48507 * 109.47095 * 330.00209 * 11 9 7 15 15 C 1.46899 * 110.99789 * 72.31970 * 5 4 3 16 16 C 1.53007 * 109.46874 * 199.83918 * 15 5 4 17 17 H 1.09004 * 109.46587 * 301.27666 * 16 15 5 18 18 O 1.42899 * 109.47056 * 61.27491 * 16 15 5 19 19 C 1.52995 * 109.47363 * 181.28035 * 16 15 5 20 20 N 1.46899 * 109.47421 * 179.97438 * 19 16 15 21 21 C 1.46896 * 111.00020 * 179.97438 * 20 19 16 22 22 C 1.53000 * 117.49804 * 223.74934 * 21 20 19 23 23 C 1.53004 * 117.49978 * 155.08782 * 21 20 19 24 24 H 1.08998 * 109.46829 * 59.99797 * 1 2 3 25 25 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46836 * 300.00158 * 1 2 3 27 27 H 1.09003 * 109.46744 * 59.99884 * 3 2 1 28 28 H 1.08996 * 109.46848 * 300.00236 * 3 2 1 29 29 H 1.09000 * 109.47454 * 303.73490 * 4 3 2 30 30 H 1.09003 * 109.46605 * 183.73561 * 4 3 2 31 31 H 1.09005 * 109.46623 * 186.04681 * 6 5 4 32 32 H 1.08991 * 109.47245 * 306.04407 * 6 5 4 33 33 H 0.96994 * 120.00110 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47480 * 319.83853 * 15 5 4 35 35 H 1.09005 * 109.47436 * 79.84217 * 15 5 4 36 36 H 0.96698 * 113.99934 * 64.91011 * 18 16 15 37 37 H 1.09006 * 109.46648 * 299.99825 * 19 16 15 38 38 H 1.08999 * 109.47297 * 59.99593 * 19 16 15 39 39 H 1.00900 * 110.99645 * 56.04311 * 20 19 16 40 40 H 1.09005 * 115.55348 * 9.41647 * 21 20 19 41 41 H 1.09000 * 117.50066 * 359.97438 * 22 21 20 42 42 H 1.09001 * 117.50264 * 145.02586 * 22 21 20 43 43 H 1.08997 * 117.50000 * 214.98042 * 23 21 20 44 44 H 1.09001 * 117.49383 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9757 0.5347 -1.2411 6 6 5.3587 0.0540 -1.1219 7 6 5.4203 -1.0501 -0.0981 8 1 4.5220 -1.3631 0.4132 9 6 6.6234 -1.6608 0.1858 10 7 6.6771 -2.6247 1.0789 11 14 8.1771 -1.1199 -0.6991 12 1 8.8315 -0.0314 0.0704 13 1 9.1069 -2.2718 -0.8157 14 1 7.8279 -0.6263 -2.0555 15 6 3.8299 1.4396 -2.3890 16 6 3.8122 0.6232 -3.6830 17 1 4.7358 0.0498 -3.7634 18 8 2.6968 -0.2700 -3.6673 19 6 3.6925 1.5678 -4.8805 20 7 3.6761 0.7840 -6.1228 21 6 3.5613 1.6599 -7.2964 22 6 2.5883 1.2389 -8.3996 23 6 4.0981 1.1309 -8.6280 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8523 0.5871 0.8555 30 1 3.9786 2.1782 0.0676 31 1 5.6957 -0.3257 -2.0865 32 1 6.0033 0.8755 -0.8096 33 1 7.5234 -3.0545 1.2784 34 1 2.8969 1.9955 -2.2974 35 1 4.6676 2.1368 -2.4108 36 1 1.8376 0.1737 -3.6729 37 1 2.7690 2.1412 -4.8000 38 1 4.5433 2.2490 -4.8924 39 1 2.9348 0.0996 -6.1087 40 1 3.6674 2.7267 -7.0992 41 1 2.0337 0.3118 -8.2547 42 1 2.0546 2.0287 -8.9284 43 1 4.5570 1.8497 -9.3068 44 1 4.5368 0.1331 -8.6330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071223197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:36 Heat of formation + Delta-G solvation = -55.489535 kcal Electronic energy + Delta-G solvation = -21890.061660 eV Core-core repulsion = 18650.902905 eV Total energy + Delta-G solvation = -3239.158754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.70979 -37.83500 -36.99776 -35.55166 -33.03429 -32.39154 -30.03915 -29.15382 -26.84759 -25.72748 -23.93726 -22.54448 -22.03523 -21.49936 -21.15768 -19.70895 -17.01723 -16.39442 -16.17878 -15.98129 -15.84751 -15.46646 -15.07161 -14.72789 -14.37316 -13.89443 -13.73913 -13.54979 -13.31762 -12.74023 -12.38432 -12.37400 -12.16931 -11.97361 -11.69396 -11.44695 -11.26716 -11.18287 -11.06385 -10.68854 -10.64372 -10.56481 -10.55844 -9.84425 -9.77363 -9.57053 -9.24150 -9.04994 -8.47578 -8.32139 -7.25231 -5.94174 -3.90155 3.34080 3.42423 3.44835 3.62590 3.85246 4.26617 4.50754 4.60861 4.72116 4.78809 4.83153 4.97505 5.17509 5.24472 5.34992 5.37279 5.42780 5.45177 5.51386 5.54104 5.60584 5.68705 5.71896 5.75065 5.78075 5.84265 5.94369 5.95722 5.98365 6.15426 6.43744 6.66008 6.89357 6.93578 7.01150 7.28206 7.63231 7.73496 7.94755 8.09361 8.14014 8.77504 9.19854 9.67765 11.19216 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.005624 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.465619 B = 4977.056088 C = 6744.889072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.502 5.502 6 C 0.162 3.838 7 C -0.502 4.502 8 H 0.085 0.915 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.872 3.128 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.022 3.978 16 C 0.116 3.884 17 H 0.108 0.892 18 O -0.534 6.534 19 C 0.030 3.970 20 N -0.653 5.653 21 C 0.023 3.977 22 C -0.209 4.209 23 C -0.173 4.173 24 H 0.031 0.969 25 H 0.081 0.919 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.030 0.970 32 H -0.020 1.020 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.357 0.643 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.351 0.649 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 12.421 -12.723 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.006 4.006 4 C -0.070 4.070 5 N -0.226 5.226 6 C 0.036 3.964 7 C -0.540 4.540 8 H 0.103 0.897 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.699 3.301 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.108 4.108 16 C 0.056 3.944 17 H 0.126 0.874 18 O -0.336 6.336 19 C -0.100 4.100 20 N -0.284 5.284 21 C -0.088 4.088 22 C -0.248 4.248 23 C -0.211 4.211 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.048 0.952 32 H -0.003 1.003 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.202 0.798 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.172 0.828 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.575 11.200 -12.708 19.458 hybrid contribution -0.069 1.986 -0.298 2.010 sum -9.644 13.186 -13.006 20.882 Atomic orbital electron populations 1.22664 0.83017 1.02215 0.98647 1.88197 1.17556 1.26823 1.94912 1.22578 0.94926 0.84965 0.98099 1.22079 0.91826 0.97225 0.95869 1.61785 1.25568 1.34722 1.00499 1.20231 0.83407 0.94831 0.97902 1.21069 0.96067 1.16439 1.20442 0.89688 1.24890 0.98533 0.94905 0.95003 1.69897 1.26001 1.24800 1.33371 0.86921 0.83953 0.78314 0.80883 1.20560 1.21218 1.19184 1.22761 0.99947 0.94543 0.93549 1.21957 0.91538 0.90767 0.90179 0.87405 1.86757 1.15099 1.35026 1.96688 1.22744 1.00658 0.96243 0.90350 1.60083 1.52569 1.15548 1.00221 1.22433 1.03309 0.96207 0.86842 1.23440 0.93267 1.03407 1.04708 1.23123 0.95522 1.03346 0.99119 0.95050 0.90042 0.95139 0.94234 0.94655 0.88020 0.94948 0.95197 1.00280 0.92825 0.91968 0.95077 0.79824 0.95098 0.90287 0.82834 0.87620 0.88653 0.88999 0.88916 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.57 10.63 -35.23 -0.37 -6.94 16 3 C 0.07 1.14 6.08 37.16 0.23 1.37 16 4 C 0.06 1.11 5.19 -3.83 -0.02 1.09 16 5 N -0.50 -10.45 4.20 -236.07 -0.99 -11.44 16 6 C 0.16 3.99 3.62 -4.97 -0.02 3.97 16 7 C -0.50 -14.63 8.83 -34.44 -0.30 -14.93 16 8 H 0.09 2.75 7.50 -52.49 -0.39 2.35 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 11 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 15 C 0.02 0.35 4.51 -3.82 -0.02 0.34 16 16 C 0.12 1.81 3.31 -26.73 -0.09 1.72 16 17 H 0.11 2.05 6.76 -51.93 -0.35 1.70 16 18 O -0.53 -8.70 12.57 -35.23 -0.44 -9.14 16 19 C 0.03 0.36 5.20 -3.83 -0.02 0.34 16 20 N -0.65 -7.96 6.78 -106.72 -0.72 -8.68 16 21 C 0.02 0.23 6.31 -67.71 -0.43 -0.19 16 22 C -0.21 -1.82 10.23 -26.69 -0.27 -2.10 16 23 C -0.17 -1.64 10.46 -26.69 -0.28 -1.92 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.49 6.47 -51.93 -0.34 0.16 16 29 H 0.10 2.27 6.58 -51.93 -0.34 1.93 16 30 H 0.03 0.55 8.05 -51.93 -0.42 0.14 16 31 H 0.03 0.76 5.68 -51.93 -0.29 0.47 16 32 H -0.02 -0.49 7.55 -51.93 -0.39 -0.89 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 34 H 0.06 0.86 6.23 -51.93 -0.32 0.54 16 35 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 36 H 0.36 4.43 9.03 45.56 0.41 4.84 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.35 4.24 7.91 -39.29 -0.31 3.93 16 40 H 0.11 0.99 7.90 -51.93 -0.41 0.58 16 41 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -33.31 353.91 -8.27 -41.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.97 Total: 6.35 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.21 Total: -6.88 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.94 Total: -47.65 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.82 Total: -16.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.31 -8.27 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071223197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.911 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds