Wall clock time and date at job start Mon Mar 30 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00308 * 2 1 4 4 C 1.52996 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46964 * 63.73677 * 4 3 2 6 6 C 1.46908 * 110.99543 * 196.26744 * 5 4 3 7 7 C 1.50700 * 109.46906 * 66.05081 * 6 5 4 8 8 H 1.07999 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00131 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00128 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99791 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47260 * 89.99877 * 11 9 7 13 13 H 1.48499 * 109.47300 * 210.00251 * 11 9 7 14 14 H 1.48507 * 109.47095 * 330.00209 * 11 9 7 15 15 C 1.46899 * 110.99789 * 72.31970 * 5 4 3 16 16 C 1.53007 * 109.46874 * 199.83918 * 15 5 4 17 17 H 1.09004 * 109.46587 * 301.27666 * 16 15 5 18 18 O 1.42899 * 109.47056 * 61.27491 * 16 15 5 19 19 C 1.52995 * 109.47363 * 181.28035 * 16 15 5 20 20 N 1.46899 * 109.47421 * 179.97438 * 19 16 15 21 21 C 1.46896 * 111.00020 * 179.97438 * 20 19 16 22 22 C 1.53000 * 117.49804 * 223.74934 * 21 20 19 23 23 C 1.53004 * 117.49978 * 155.08782 * 21 20 19 24 24 H 1.08998 * 109.46829 * 59.99797 * 1 2 3 25 25 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46836 * 300.00158 * 1 2 3 27 27 H 1.09003 * 109.46744 * 59.99884 * 3 2 1 28 28 H 1.08996 * 109.46848 * 300.00236 * 3 2 1 29 29 H 1.09000 * 109.47454 * 303.73490 * 4 3 2 30 30 H 1.09003 * 109.46605 * 183.73561 * 4 3 2 31 31 H 1.09005 * 109.46623 * 186.04681 * 6 5 4 32 32 H 1.08991 * 109.47245 * 306.04407 * 6 5 4 33 33 H 0.96994 * 120.00110 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47480 * 319.83853 * 15 5 4 35 35 H 1.09005 * 109.47436 * 79.84217 * 15 5 4 36 36 H 0.96698 * 113.99934 * 64.91011 * 18 16 15 37 37 H 1.09006 * 109.46648 * 299.99825 * 19 16 15 38 38 H 1.08999 * 109.47297 * 59.99593 * 19 16 15 39 39 H 1.00900 * 110.99645 * 56.04311 * 20 19 16 40 40 H 1.09005 * 115.55348 * 9.41647 * 21 20 19 41 41 H 1.09000 * 117.50066 * 359.97438 * 22 21 20 42 42 H 1.09001 * 117.50264 * 145.02586 * 22 21 20 43 43 H 1.08997 * 117.50000 * 214.98042 * 23 21 20 44 44 H 1.09001 * 117.49383 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9757 0.5347 -1.2411 6 6 5.3587 0.0540 -1.1219 7 6 5.4203 -1.0501 -0.0981 8 1 4.5220 -1.3631 0.4132 9 6 6.6234 -1.6608 0.1858 10 7 6.6771 -2.6247 1.0789 11 14 8.1771 -1.1199 -0.6991 12 1 8.8315 -0.0314 0.0704 13 1 9.1069 -2.2718 -0.8157 14 1 7.8279 -0.6263 -2.0555 15 6 3.8299 1.4396 -2.3890 16 6 3.8122 0.6232 -3.6830 17 1 4.7358 0.0498 -3.7634 18 8 2.6968 -0.2700 -3.6673 19 6 3.6925 1.5678 -4.8805 20 7 3.6761 0.7840 -6.1228 21 6 3.5613 1.6599 -7.2964 22 6 2.5883 1.2389 -8.3996 23 6 4.0981 1.1309 -8.6280 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8523 0.5871 0.8555 30 1 3.9786 2.1782 0.0676 31 1 5.6957 -0.3257 -2.0865 32 1 6.0033 0.8755 -0.8096 33 1 7.5234 -3.0545 1.2784 34 1 2.8969 1.9955 -2.2974 35 1 4.6676 2.1368 -2.4108 36 1 1.8376 0.1737 -3.6729 37 1 2.7690 2.1412 -4.8000 38 1 4.5433 2.2490 -4.8924 39 1 2.9348 0.0996 -6.1087 40 1 3.6674 2.7267 -7.0992 41 1 2.0337 0.3118 -8.2547 42 1 2.0546 2.0287 -8.9284 43 1 4.5570 1.8497 -9.3068 44 1 4.5368 0.1331 -8.6330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071223197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:36 Heat of formation + Delta-G solvation = -84.267221 kcal Electronic energy + Delta-G solvation = -21891.309554 eV Core-core repulsion = 18650.902905 eV Total energy + Delta-G solvation = -3240.406649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92496 -38.90830 -38.11202 -36.97956 -34.59763 -33.98882 -31.35629 -30.82521 -28.36961 -26.89512 -25.26743 -23.81508 -23.22483 -22.56927 -22.09493 -21.25384 -19.02736 -17.70045 -17.41140 -17.15023 -16.81787 -16.62812 -16.41657 -16.13789 -15.90433 -15.34636 -15.04994 -14.65265 -14.57588 -14.34743 -14.05996 -13.63150 -13.42538 -13.16777 -12.86981 -12.69905 -12.58380 -12.45522 -12.37533 -12.22216 -11.97676 -11.79728 -11.72338 -11.42247 -11.33766 -11.29254 -10.75344 -10.68658 -10.38230 -9.15039 -8.83688 -8.24107 -6.25859 1.32588 1.36607 1.46885 2.36228 2.79412 2.97819 3.08882 3.11324 3.34524 3.72037 3.95254 4.02320 4.06390 4.14544 4.22131 4.24112 4.30051 4.42206 4.49095 4.52894 4.59047 4.63347 4.67544 4.71898 4.77229 4.80196 4.84979 4.89681 4.92844 5.04576 5.07189 5.19382 5.24117 5.28942 5.60735 6.04280 6.12498 6.37905 6.40702 6.58592 6.75328 6.82328 7.06070 7.36647 8.93299 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.005624 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.465619 B = 4977.056088 C = 6744.889072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.078 3.922 4 C 0.056 3.944 5 N -0.522 5.522 6 C 0.175 3.825 7 C -0.507 4.507 8 H 0.034 0.966 9 C 0.005 3.995 10 N -0.951 5.951 11 Si 0.946 3.054 12 H -0.264 1.264 13 H -0.283 1.283 14 H -0.252 1.252 15 C 0.024 3.976 16 C 0.121 3.879 17 H 0.067 0.933 18 O -0.556 6.556 19 C 0.045 3.955 20 N -0.672 5.672 21 C 0.013 3.987 22 C -0.196 4.196 23 C -0.180 4.180 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.023 0.977 32 H -0.015 1.015 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.375 0.625 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.348 0.652 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 15.295 -14.806 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.001 3.999 4 C -0.072 4.072 5 N -0.246 5.246 6 C 0.048 3.952 7 C -0.545 4.545 8 H 0.052 0.948 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.769 3.231 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.176 1.176 15 C -0.105 4.105 16 C 0.061 3.939 17 H 0.085 0.915 18 O -0.361 6.361 19 C -0.085 4.085 20 N -0.303 5.303 21 C -0.098 4.098 22 C -0.235 4.235 23 C -0.219 4.219 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.003 0.997 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.222 0.778 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.169 0.831 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.291 14.107 -14.802 22.891 hybrid contribution 0.002 1.042 0.387 1.111 sum -10.289 15.148 -14.416 23.305 Atomic orbital electron populations 1.22838 0.80530 1.02885 1.00592 1.88133 1.20478 1.28543 1.95345 1.22570 0.92276 0.84577 1.00486 1.22078 0.94622 0.97042 0.93444 1.61644 1.22899 1.37358 1.02688 1.19912 0.86239 0.93447 0.95630 1.21273 0.94387 1.17772 1.21093 0.94787 1.25848 1.02558 0.94859 0.95845 1.70066 1.27214 1.26552 1.35405 0.85740 0.78889 0.78283 0.80158 1.18891 1.20842 1.17619 1.22860 1.01905 0.94064 0.91677 1.21775 0.89870 0.90610 0.91651 0.91530 1.86710 1.16301 1.36287 1.96820 1.22534 1.02090 0.95204 0.88671 1.60052 1.52945 1.16324 1.00996 1.22524 1.04517 0.96448 0.86275 1.23468 0.92765 1.03701 1.03520 1.23174 0.96452 1.02961 0.99279 0.92690 0.90197 0.93420 0.91975 0.91773 0.92870 0.92663 0.95863 0.99724 0.92608 0.88725 0.94079 0.77784 0.92476 0.89873 0.83113 0.86395 0.88932 0.87241 0.87495 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.78 10.63 -148.98 -1.58 -16.36 16 3 C 0.08 2.32 6.08 71.98 0.44 2.76 16 4 C 0.06 2.12 5.19 86.30 0.45 2.57 16 5 N -0.52 -21.60 4.20 -900.78 -3.78 -25.39 16 6 C 0.17 8.70 3.62 85.56 0.31 9.01 16 7 C -0.51 -30.90 8.83 25.60 0.23 -30.68 16 8 H 0.03 2.36 7.50 -2.91 -0.02 2.34 16 9 C 0.01 0.33 5.47 84.66 0.46 0.79 16 10 N -0.95 -62.13 13.96 21.45 0.30 -61.83 16 11 Si 0.95 46.05 27.47 68.60 1.88 47.94 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 15 C 0.02 0.71 4.51 86.31 0.39 1.10 16 16 C 0.12 3.61 3.31 30.60 0.10 3.71 16 17 H 0.07 2.54 6.76 -2.38 -0.02 2.53 16 18 O -0.56 -17.57 12.57 -148.98 -1.87 -19.44 16 19 C 0.04 0.96 5.20 86.30 0.45 1.41 16 20 N -0.67 -15.19 6.78 -491.57 -3.33 -18.52 16 21 C 0.01 0.23 6.31 44.92 0.28 0.51 16 22 C -0.20 -2.92 10.23 30.62 0.31 -2.60 16 23 C -0.18 -3.10 10.46 30.62 0.32 -2.78 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.54 6.47 -2.39 -0.02 1.52 16 29 H 0.05 2.50 6.58 -2.39 -0.02 2.49 16 30 H 0.06 1.79 8.05 -2.39 -0.02 1.77 16 31 H 0.02 1.19 5.68 -2.38 -0.01 1.18 16 32 H -0.01 -0.71 7.55 -2.39 -0.02 -0.73 16 33 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 34 H 0.09 2.23 6.23 -2.39 -0.01 2.22 16 35 H 0.04 1.18 8.00 -2.38 -0.02 1.16 16 36 H 0.37 8.46 9.03 -74.06 -0.67 7.79 16 37 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.35 7.96 7.91 -89.69 -0.71 7.25 16 40 H 0.12 1.81 7.90 -2.38 -0.02 1.79 16 41 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.60 353.91 -3.85 -80.45 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.45 Total: 25.40 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 4.99 Total: -12.25 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -6.82 Total: -105.73 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -3.46 Total: -35.81 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.94 kcal Total: -76.60 -3.85 -80.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071223197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.819 kcal (2) G-P(sol) polarization free energy of solvation -76.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds