Wall clock time and date at job start Mon Mar 30 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99697 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99516 * 4 3 2 6 6 C 1.46502 * 119.99658 * 90.00442 * 5 4 3 7 7 C 1.50701 * 109.47310 * 89.99973 * 6 5 4 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99860 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47093 * 60.00167 * 11 9 7 13 13 H 1.48503 * 109.47145 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47483 * 300.00005 * 11 9 7 15 15 C 1.34775 * 120.00337 * 270.00307 * 5 4 3 16 16 O 1.21282 * 120.00258 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99714 * 359.97438 * 15 5 4 18 18 H 1.08996 * 110.59166 * 40.70821 * 17 15 5 19 19 C 1.54931 * 110.67070 * 277.69890 * 17 15 5 20 20 C 1.54787 * 102.83771 * 204.28619 * 19 17 15 21 21 H 1.08987 * 110.39633 * 140.72713 * 20 19 17 22 22 O 1.42900 * 110.23070 * 262.80587 * 20 19 17 23 23 C 1.53993 * 105.21083 * 21.72048 * 20 19 17 24 24 N 1.47901 * 107.05907 * 1.37421 * 23 20 19 25 25 H 1.08998 * 109.47394 * 60.00226 * 1 2 3 26 26 H 1.08995 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46836 * 299.99784 * 1 2 3 28 28 H 1.08990 * 109.47416 * 60.00374 * 3 2 1 29 29 H 1.09001 * 109.47100 * 300.00056 * 3 2 1 30 30 H 1.09002 * 109.47398 * 54.99843 * 4 3 2 31 31 H 1.09001 * 109.47194 * 175.00023 * 4 3 2 32 32 H 1.08998 * 109.46888 * 209.99779 * 6 5 4 33 33 H 1.08994 * 109.47490 * 329.99842 * 6 5 4 34 34 H 0.97000 * 119.99433 * 179.97438 * 10 9 7 35 35 H 1.08999 * 110.72436 * 322.50562 * 19 17 15 36 36 H 1.08997 * 110.72738 * 85.79269 * 19 17 15 37 37 H 0.96701 * 114.00029 * 177.21139 * 22 20 19 38 38 H 1.09003 * 109.91978 * 242.02075 * 23 20 19 39 39 H 1.08996 * 110.07957 * 120.81951 * 23 20 19 40 40 H 1.00899 * 111.00032 * 214.15555 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5642 1.2509 6 6 4.1063 -0.8924 1.3403 7 6 5.5017 -1.2980 0.9413 8 1 6.2201 -0.5461 0.6498 9 6 5.8614 -2.6290 0.9484 10 7 4.9868 -3.5446 1.3038 11 14 7.5909 -3.1318 0.4531 12 1 8.5729 -2.4900 1.3637 13 1 7.7228 -4.6081 0.5450 14 1 7.8524 -2.6970 -0.9425 15 6 4.2632 1.3331 2.3200 16 8 4.6289 0.8194 3.3560 17 6 4.1304 2.8314 2.2278 18 1 3.2345 3.1032 1.6697 19 6 5.3908 3.4530 1.5755 20 6 5.3802 4.9022 2.1192 21 1 6.3936 5.2269 2.3548 22 8 4.7871 5.7841 1.1640 23 6 4.5253 4.8474 3.3989 24 7 4.1089 3.4401 3.5826 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5686 -0.8427 31 1 3.9785 2.1766 -0.0902 32 1 3.9139 -1.2120 2.3645 33 1 3.3859 -1.3631 0.6714 34 1 5.2397 -4.4810 1.3084 35 1 6.2903 2.9284 1.8974 36 1 5.3064 3.4452 0.4888 37 1 4.7138 6.6997 1.4664 38 1 3.6469 5.4829 3.2863 39 1 5.1133 5.1755 4.2561 40 1 3.1868 3.3860 3.9887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071231667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:55 Heat of formation + Delta-G solvation = -115.135530 kcal Electronic energy + Delta-G solvation = -22259.708602 eV Core-core repulsion = 18882.130309 eV Total energy + Delta-G solvation = -3377.578293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82148 -38.18679 -37.35944 -35.31247 -34.68239 -32.59615 -29.98053 -29.52161 -28.75063 -26.81699 -25.89959 -23.48403 -22.68387 -21.42912 -20.92708 -18.42189 -17.86332 -16.70390 -16.62271 -16.34753 -15.76868 -15.52939 -15.00841 -14.72159 -14.50224 -14.12131 -13.86521 -13.43016 -13.22639 -12.90657 -12.68504 -12.31189 -12.05620 -11.89181 -11.68476 -11.53115 -11.31796 -11.16087 -10.96197 -10.85275 -10.74381 -10.33114 -10.27382 -10.04747 -9.51681 -9.42415 -8.90726 -8.32476 -8.29800 -7.52600 -5.91158 -3.95102 3.38937 3.40724 3.43322 3.46990 3.75018 4.00094 4.06682 4.46341 4.49043 4.57576 4.71772 4.91031 5.12460 5.14196 5.32456 5.39522 5.42493 5.46596 5.53250 5.53944 5.59010 5.60907 5.71244 5.75472 5.85067 5.89396 6.10007 6.28168 6.62890 7.22590 7.36850 7.41640 7.42802 7.64248 7.70698 8.06980 8.39004 8.57141 9.03876 9.24013 9.68635 11.16833 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.006498 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.494135 B = 4307.766228 C = 5487.538583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.045 3.955 4 C 0.109 3.891 5 N -0.590 5.590 6 C 0.251 3.749 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.511 3.489 16 O -0.517 6.517 17 C 0.050 3.950 18 H 0.066 0.934 19 C -0.103 4.103 20 C 0.092 3.908 21 H 0.071 0.929 22 O -0.565 6.565 23 C 0.011 3.989 24 N -0.642 5.642 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.376 0.624 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 18.106 -2.340 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.033 4.033 4 C -0.016 4.016 5 N -0.322 5.322 6 C 0.132 3.868 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.295 3.705 16 O -0.392 6.392 17 C -0.063 4.063 18 H 0.084 0.916 19 C -0.142 4.142 20 C 0.033 3.967 21 H 0.089 0.911 22 O -0.370 6.370 23 C -0.119 4.119 24 N -0.272 5.272 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.224 0.776 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.337 16.605 -1.856 17.540 hybrid contribution -0.170 0.884 -0.381 0.977 sum -5.507 17.489 -2.236 18.472 Atomic orbital electron populations 1.22701 0.82102 1.02616 0.99056 1.88115 1.18673 1.26871 1.95112 1.23119 0.95495 0.85413 0.99323 1.21569 0.91086 0.99080 0.89850 1.48167 1.64569 1.09758 1.09741 1.19286 0.96652 0.72047 0.98794 1.21443 0.97523 0.92172 1.45217 0.92706 1.24911 0.97277 0.96438 0.95445 1.69941 1.34335 1.00950 1.48107 0.86610 0.84940 0.77261 0.78871 1.20298 1.21273 1.20348 1.19936 0.78990 0.87237 0.84319 1.90676 1.45078 1.74198 1.29261 1.22666 0.98665 0.94443 0.90567 0.91608 1.22510 0.98306 0.92276 1.01063 1.22730 0.95544 0.90936 0.87528 0.91108 1.86563 1.84378 1.22397 1.43692 1.23452 0.99077 0.90722 0.98633 1.62688 1.32724 1.12036 1.19790 0.94685 0.89722 0.94684 0.94048 0.93093 0.88900 0.90095 0.94366 0.93673 0.92847 0.88624 0.89211 0.77647 0.93378 0.89764 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.52 9.53 -35.23 -0.34 -6.86 16 3 C 0.04 0.66 6.11 37.16 0.23 0.89 16 4 C 0.11 1.84 5.44 -4.04 -0.02 1.82 16 5 N -0.59 -12.91 2.42 -175.06 -0.42 -13.33 16 6 C 0.25 6.86 4.98 -5.19 -0.03 6.83 16 7 C -0.52 -15.33 9.39 -34.44 -0.32 -15.66 16 8 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 11 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.51 11.03 6.99 -10.99 -0.08 10.95 16 16 O -0.52 -13.71 16.17 5.56 0.09 -13.62 16 17 C 0.05 0.79 2.60 -66.94 -0.17 0.62 16 18 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 19 C -0.10 -1.47 5.92 -24.77 -0.15 -1.62 16 20 C 0.09 1.01 4.36 -25.27 -0.11 0.90 16 21 H 0.07 0.69 8.14 -51.94 -0.42 0.27 16 22 O -0.56 -5.59 13.25 -35.23 -0.47 -6.06 16 23 C 0.01 0.12 7.33 -2.75 -0.02 0.10 16 24 N -0.64 -9.48 6.78 -104.38 -0.71 -10.19 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.59 7.30 -51.93 -0.38 0.21 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.66 8.07 -51.93 -0.42 1.24 16 31 H 0.08 1.13 5.13 -51.93 -0.27 0.87 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 33 H 0.05 1.28 7.11 -51.93 -0.37 0.91 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.10 1.53 8.05 -51.93 -0.42 1.11 16 36 H 0.09 1.20 6.75 -51.93 -0.35 0.84 16 37 H 0.38 1.97 9.11 45.56 0.41 2.39 16 38 H 0.05 0.43 7.96 -51.93 -0.41 0.02 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.34 4.59 8.92 -39.29 -0.35 4.24 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -36.63 328.99 -6.17 -42.81 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.35 Total: 3.51 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.34 Total: 8.07 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.39 Total: -50.25 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.71 Total: -26.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.63 -6.17 -42.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.327 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds