Wall clock time and date at job start Mon Mar 30 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99697 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99516 * 4 3 2 6 6 C 1.46502 * 119.99658 * 90.00442 * 5 4 3 7 7 C 1.50701 * 109.47310 * 89.99973 * 6 5 4 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99860 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47093 * 60.00167 * 11 9 7 13 13 H 1.48503 * 109.47145 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47483 * 300.00005 * 11 9 7 15 15 C 1.34775 * 120.00337 * 270.00307 * 5 4 3 16 16 O 1.21282 * 120.00258 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99714 * 359.97438 * 15 5 4 18 18 H 1.08996 * 110.59166 * 40.70821 * 17 15 5 19 19 C 1.54931 * 110.67070 * 277.69890 * 17 15 5 20 20 C 1.54787 * 102.83771 * 204.28619 * 19 17 15 21 21 H 1.08987 * 110.39633 * 140.72713 * 20 19 17 22 22 O 1.42900 * 110.23070 * 262.80587 * 20 19 17 23 23 C 1.53993 * 105.21083 * 21.72048 * 20 19 17 24 24 N 1.47901 * 107.05907 * 1.37421 * 23 20 19 25 25 H 1.08998 * 109.47394 * 60.00226 * 1 2 3 26 26 H 1.08995 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46836 * 299.99784 * 1 2 3 28 28 H 1.08990 * 109.47416 * 60.00374 * 3 2 1 29 29 H 1.09001 * 109.47100 * 300.00056 * 3 2 1 30 30 H 1.09002 * 109.47398 * 54.99843 * 4 3 2 31 31 H 1.09001 * 109.47194 * 175.00023 * 4 3 2 32 32 H 1.08998 * 109.46888 * 209.99779 * 6 5 4 33 33 H 1.08994 * 109.47490 * 329.99842 * 6 5 4 34 34 H 0.97000 * 119.99433 * 179.97438 * 10 9 7 35 35 H 1.08999 * 110.72436 * 322.50562 * 19 17 15 36 36 H 1.08997 * 110.72738 * 85.79269 * 19 17 15 37 37 H 0.96701 * 114.00029 * 177.21139 * 22 20 19 38 38 H 1.09003 * 109.91978 * 242.02075 * 23 20 19 39 39 H 1.08996 * 110.07957 * 120.81951 * 23 20 19 40 40 H 1.00899 * 111.00032 * 214.15555 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5642 1.2509 6 6 4.1063 -0.8924 1.3403 7 6 5.5017 -1.2980 0.9413 8 1 6.2201 -0.5461 0.6498 9 6 5.8614 -2.6290 0.9484 10 7 4.9868 -3.5446 1.3038 11 14 7.5909 -3.1318 0.4531 12 1 8.5729 -2.4900 1.3637 13 1 7.7228 -4.6081 0.5450 14 1 7.8524 -2.6970 -0.9425 15 6 4.2632 1.3331 2.3200 16 8 4.6289 0.8194 3.3560 17 6 4.1304 2.8314 2.2278 18 1 3.2345 3.1032 1.6697 19 6 5.3908 3.4530 1.5755 20 6 5.3802 4.9022 2.1192 21 1 6.3936 5.2269 2.3548 22 8 4.7871 5.7841 1.1640 23 6 4.5253 4.8474 3.3989 24 7 4.1089 3.4401 3.5826 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5686 -0.8427 31 1 3.9785 2.1766 -0.0902 32 1 3.9139 -1.2120 2.3645 33 1 3.3859 -1.3631 0.6714 34 1 5.2397 -4.4810 1.3084 35 1 6.2903 2.9284 1.8974 36 1 5.3064 3.4452 0.4888 37 1 4.7138 6.6997 1.4664 38 1 3.6469 5.4829 3.2863 39 1 5.1133 5.1755 4.2561 40 1 3.1868 3.3860 3.9887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071231667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:55 Heat of formation + Delta-G solvation = -147.507260 kcal Electronic energy + Delta-G solvation = -22261.112346 eV Core-core repulsion = 18882.130309 eV Total energy + Delta-G solvation = -3378.982037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21759 -39.36991 -38.68007 -36.53930 -36.16640 -34.76003 -31.40693 -30.83063 -29.89704 -28.58094 -27.10504 -25.26767 -24.14928 -22.82598 -21.88182 -19.97554 -18.84137 -18.58864 -17.98184 -17.81110 -16.96011 -16.95437 -16.65719 -16.03255 -15.98074 -15.42491 -15.30471 -14.73108 -14.45465 -14.14820 -13.97510 -13.78105 -13.50845 -13.40598 -13.15243 -12.91846 -12.76839 -12.68291 -12.60453 -12.48923 -12.16378 -11.99255 -11.78338 -11.66833 -11.04954 -10.63142 -10.58968 -10.49463 -9.49799 -9.37747 -8.17370 -6.32330 1.36486 1.41793 1.48755 1.80826 2.21833 2.43576 2.94017 3.11302 3.13343 3.33054 3.52648 3.67987 3.85505 3.97384 4.13130 4.16735 4.29552 4.35190 4.42113 4.50790 4.52411 4.59047 4.72275 4.79921 4.85279 4.89235 4.95109 5.02867 5.19335 5.30154 5.58867 5.66021 5.91373 6.12437 6.25100 6.32925 6.76230 6.85977 6.91005 7.32501 7.54666 8.89706 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.006498 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.494135 B = 4307.766228 C = 5487.538583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.046 3.954 4 C 0.103 3.897 5 N -0.594 5.594 6 C 0.273 3.727 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.005 3.995 10 N -0.929 5.929 11 Si 0.968 3.032 12 H -0.277 1.277 13 H -0.278 1.278 14 H -0.259 1.259 15 C 0.502 3.498 16 O -0.581 6.581 17 C 0.065 3.935 18 H 0.092 0.908 19 C -0.109 4.109 20 C 0.105 3.895 21 H 0.086 0.914 22 O -0.572 6.572 23 C 0.015 3.985 24 N -0.670 5.670 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.116 0.884 32 H -0.014 1.014 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.399 0.601 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 20.980 -3.779 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.031 4.031 4 C -0.019 4.019 5 N -0.325 5.325 6 C 0.152 3.848 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.792 3.208 12 H -0.203 1.203 13 H -0.203 1.203 14 H -0.183 1.183 15 C 0.289 3.711 16 O -0.460 6.460 17 C -0.048 4.048 18 H 0.110 0.890 19 C -0.147 4.147 20 C 0.045 3.955 21 H 0.104 0.896 22 O -0.381 6.381 23 C -0.114 4.114 24 N -0.302 5.302 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.004 0.996 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.250 0.750 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.175 19.553 -3.333 20.499 hybrid contribution -0.301 0.019 0.083 0.312 sum -5.476 19.572 -3.251 20.582 Atomic orbital electron populations 1.22864 0.79993 1.03136 1.00832 1.88055 1.21209 1.28803 1.95506 1.23167 0.93431 0.84878 1.01610 1.21893 0.93279 0.99951 0.86809 1.48123 1.64591 1.07811 1.12020 1.18616 0.95552 0.75774 0.94898 1.21736 0.98286 0.92652 1.45492 0.92829 1.25889 1.01928 0.96376 0.95138 1.70080 1.36655 1.01386 1.48808 0.85472 0.78970 0.77156 0.79216 1.20303 1.20320 1.18350 1.21062 0.77176 0.89867 0.82977 1.90630 1.47854 1.75946 1.31547 1.22478 1.00600 0.89594 0.92091 0.89007 1.22507 0.96145 0.94444 1.01603 1.22506 0.96586 0.89181 0.87201 0.89610 1.86503 1.84187 1.23954 1.43463 1.23545 1.00232 0.88595 0.99033 1.62600 1.33449 1.14782 1.19331 0.91828 0.90040 0.93809 0.93235 0.88958 0.90303 0.86614 0.99622 0.95426 0.92550 0.91244 0.88168 0.74976 0.90715 0.88713 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.42 -14.66 9.53 -148.98 -1.42 -16.08 16 3 C 0.05 1.29 6.11 71.98 0.44 1.73 16 4 C 0.10 3.42 5.44 86.38 0.47 3.89 16 5 N -0.59 -26.84 2.42 -826.16 -2.00 -28.84 16 6 C 0.27 15.81 4.98 85.63 0.43 16.23 16 7 C -0.54 -32.96 9.39 25.60 0.24 -32.72 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.01 0.32 5.46 84.65 0.46 0.78 16 10 N -0.93 -59.06 13.29 21.45 0.28 -58.77 16 11 Si 0.97 46.72 29.54 68.60 2.03 48.75 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 C 0.50 22.30 6.99 87.66 0.61 22.91 16 16 O -0.58 -32.51 16.17 -3.04 -0.05 -32.56 16 17 C 0.07 1.99 2.60 44.51 0.12 2.11 16 18 H 0.09 2.32 6.33 -2.39 -0.02 2.31 16 19 C -0.11 -2.89 5.92 31.86 0.19 -2.71 16 20 C 0.10 1.95 4.36 31.54 0.14 2.09 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 O -0.57 -8.75 13.25 -148.98 -1.97 -10.73 16 23 C 0.01 0.27 7.33 86.45 0.63 0.91 16 24 N -0.67 -18.90 6.78 -484.15 -3.28 -22.18 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.29 7.30 -2.39 -0.02 1.27 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 31 H 0.12 2.97 5.13 -2.39 -0.01 2.95 16 32 H -0.01 -0.97 7.42 -2.39 -0.02 -0.99 16 33 H 0.03 1.67 7.11 -2.39 -0.02 1.66 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.07 2.21 8.05 -2.39 -0.02 2.19 16 36 H 0.10 2.40 6.75 -2.39 -0.02 2.39 16 37 H 0.40 2.23 9.11 -74.06 -0.67 1.56 16 38 H 0.07 1.00 7.96 -2.39 -0.02 0.98 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.35 8.90 8.92 -89.69 -0.80 8.10 16 Total: -1.00 -84.89 328.99 -1.85 -86.75 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.42 Total: 16.49 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 4.97 Total: 17.17 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.99 Total: -109.79 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -3.44 Total: -59.36 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -84.89 -1.85 -86.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.761 kcal (2) G-P(sol) polarization free energy of solvation -84.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds