Wall clock time and date at job start Mon Mar 30 2020 05:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.53000 * 109.47088 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46493 * 65.00168 * 4 3 2 6 6 C 1.46502 * 119.99648 * 90.00547 * 5 4 3 7 7 C 1.50706 * 109.46622 * 269.99313 * 6 5 4 8 8 H 1.08005 * 120.00138 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99722 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 119.99815 * 11 9 7 14 14 H 1.48498 * 109.47295 * 240.00422 * 11 9 7 15 15 C 1.34769 * 119.99980 * 269.99370 * 5 4 3 16 16 O 1.21281 * 120.00358 * 0.02562 * 15 5 4 17 17 C 1.50704 * 120.00159 * 180.02562 * 15 5 4 18 18 H 1.09003 * 110.59411 * 317.00013 * 17 15 5 19 19 C 1.54933 * 110.66213 * 80.00349 * 17 15 5 20 20 C 1.54602 * 102.91936 * 155.85468 * 19 17 15 21 21 H 1.08991 * 110.31090 * 96.96003 * 20 19 17 22 22 O 1.42909 * 110.30566 * 219.03106 * 20 19 17 23 23 C 1.53994 * 105.13574 * 338.04065 * 20 19 17 24 24 N 1.47896 * 107.06061 * 358.77848 * 23 20 19 25 25 H 1.09002 * 109.46942 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47179 * 299.99635 * 1 2 3 27 27 H 1.09000 * 109.47087 * 60.00007 * 1 2 3 28 28 H 1.09012 * 109.46888 * 60.00139 * 3 2 1 29 29 H 1.08997 * 109.47435 * 300.00355 * 3 2 1 30 30 H 1.08999 * 109.47257 * 305.00747 * 4 3 2 31 31 H 1.08997 * 109.46953 * 184.99961 * 4 3 2 32 32 H 1.08996 * 109.47065 * 149.99995 * 6 5 4 33 33 H 1.08994 * 109.47523 * 29.99471 * 6 5 4 34 34 H 0.97000 * 119.99651 * 0.02562 * 10 9 7 35 35 H 1.09003 * 110.72528 * 274.20523 * 19 17 15 36 36 H 1.08998 * 110.72781 * 37.49481 * 19 17 15 37 37 H 0.96696 * 113.99350 * 180.02562 * 22 20 19 38 38 H 1.08997 * 109.91585 * 118.13276 * 23 20 19 39 39 H 1.09000 * 109.91578 * 239.22581 * 23 20 19 40 40 H 1.00907 * 111.00349 * 264.81383 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.2882 1.4000 -2.4130 7 6 3.0440 1.5927 -3.2412 8 1 2.1140 1.1384 -2.9326 9 6 3.0928 2.3491 -4.3929 10 7 4.2253 2.9020 -4.7690 11 14 1.5508 2.5875 -5.4199 12 1 0.4174 1.8674 -4.7856 13 1 1.2313 4.0353 -5.5046 14 1 1.7774 2.0498 -6.7854 15 6 4.0959 -0.7758 -1.3332 16 8 3.8377 -1.4679 -0.3713 17 6 4.5502 -1.4143 -2.6205 18 1 4.0578 -0.9486 -3.4742 19 6 6.0905 -1.3242 -2.7616 20 6 6.4198 -2.4982 -3.7122 21 1 6.5114 -2.1405 -4.7376 22 8 7.6273 -3.1439 -3.3031 23 6 5.2264 -3.4635 -3.5874 24 7 4.2959 -2.8775 -2.5984 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1766 0.0902 32 1 5.0542 0.9127 -3.0162 33 1 4.6539 2.3697 -2.0755 34 1 5.0263 2.7773 -4.2363 35 1 6.3820 -0.3734 -3.2078 36 1 6.5752 -1.4628 -1.7952 37 1 7.8841 -3.8888 -3.8635 38 1 4.7282 -3.5645 -4.5516 39 1 5.5719 -4.4386 -3.2443 40 1 4.4586 -3.2589 -1.6785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071231671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:58 Heat of formation + Delta-G solvation = -126.044617 kcal Electronic energy + Delta-G solvation = -22625.965732 eV Core-core repulsion = 19247.914385 eV Total energy + Delta-G solvation = -3378.051347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.83328 -38.16277 -37.07478 -35.26350 -34.98954 -32.80291 -30.33005 -28.99242 -28.01605 -26.64774 -25.82312 -23.43456 -22.82698 -21.37595 -20.69991 -18.76394 -17.49349 -17.00885 -16.62249 -16.02102 -15.73581 -15.53554 -14.94997 -14.82981 -14.12659 -13.83027 -13.76395 -13.50995 -13.19581 -12.81171 -12.55375 -12.20267 -12.05052 -11.81864 -11.62793 -11.46611 -11.36722 -11.17517 -10.89288 -10.75189 -10.69259 -10.47059 -10.22706 -10.09718 -9.22992 -9.15792 -8.94209 -8.52284 -8.31338 -7.67404 -6.52222 -4.28213 3.30386 3.36496 3.37761 3.52576 3.76949 4.22097 4.33330 4.40120 4.59047 4.76627 5.10169 5.16502 5.18602 5.34436 5.52416 5.54952 5.64210 5.70101 5.75119 5.79100 5.85585 5.94431 5.96682 5.99295 6.04996 6.09057 6.39930 6.40851 6.57652 6.76324 6.92867 7.39210 7.56444 7.68424 7.71205 7.84938 8.15414 8.42796 8.65615 8.99749 9.42571 10.83124 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.008262 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.649090 B = 3388.261973 C = 4717.883369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.368 6.368 3 C 0.043 3.957 4 C 0.127 3.873 5 N -0.589 5.589 6 C 0.222 3.778 7 C -0.612 4.612 8 H 0.059 0.941 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 1.071 2.929 12 H -0.289 1.289 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.531 3.469 16 O -0.549 6.549 17 C 0.061 3.939 18 H 0.128 0.872 19 C -0.137 4.137 20 C 0.073 3.927 21 H 0.069 0.931 22 O -0.565 6.565 23 C 0.013 3.987 24 N -0.651 5.651 25 H 0.078 0.922 26 H 0.031 0.969 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.031 0.969 33 H 0.024 0.976 34 H 0.268 0.732 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.375 0.625 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 -6.451 3.475 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.003 3.997 5 N -0.320 5.320 6 C 0.102 3.898 7 C -0.651 4.651 8 H 0.077 0.923 9 C -0.181 4.181 10 N -0.543 5.543 11 Si 0.899 3.101 12 H -0.214 1.214 13 H -0.213 1.213 14 H -0.212 1.212 15 C 0.318 3.682 16 O -0.428 6.428 17 C -0.052 4.052 18 H 0.146 0.854 19 C -0.176 4.176 20 C 0.013 3.987 21 H 0.087 0.913 22 O -0.370 6.370 23 C -0.117 4.117 24 N -0.281 5.281 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.222 0.778 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.372 -5.791 2.675 6.390 hybrid contribution 1.138 -0.584 1.187 1.745 sum 0.766 -6.375 3.862 7.493 Atomic orbital electron populations 1.22636 0.82538 1.01950 0.99147 1.88077 1.18228 1.27165 1.95191 1.23036 0.94805 0.85349 1.00269 1.21280 0.92382 0.98237 0.87770 1.47817 1.65033 1.05854 1.13260 1.19615 0.97219 0.89901 0.83067 1.22411 0.96317 1.35923 1.10412 0.92256 1.25771 1.02961 0.93058 0.96328 1.70783 1.00411 1.42364 1.40698 0.83506 0.74289 0.76447 0.75874 1.21439 1.21299 1.21155 1.19955 0.77257 0.82371 0.88650 1.90599 1.51380 1.62106 1.38676 1.22718 0.93909 0.89757 0.98823 0.85432 1.23043 0.95840 0.98268 1.00455 1.23197 0.84460 0.92987 0.98096 0.91287 1.86553 1.42458 1.50066 1.57965 1.23508 0.92172 0.97763 0.98283 1.62697 1.51035 1.02647 1.11723 0.90342 0.95068 0.94410 0.94052 0.91441 0.90404 0.89809 0.95118 0.95778 0.92142 0.89172 0.90446 0.77815 0.90032 0.90932 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.37 -7.46 9.49 -43.00 -0.41 -7.87 16 3 C 0.04 0.80 6.28 37.16 0.23 1.03 16 4 C 0.13 2.38 5.90 -4.04 -0.02 2.35 16 5 N -0.59 -12.45 2.44 -175.06 -0.43 -12.88 16 6 C 0.22 5.07 4.16 -5.19 -0.02 5.05 16 7 C -0.61 -15.57 8.36 -34.44 -0.29 -15.86 16 8 H 0.06 1.60 7.23 -52.48 -0.38 1.22 16 9 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 10 N -0.91 -24.99 13.65 55.43 0.76 -24.23 16 11 Si 1.07 23.91 29.90 -169.99 -5.08 18.82 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.53 11.46 6.62 -10.99 -0.07 11.39 16 16 O -0.55 -12.82 14.63 -2.21 -0.03 -12.86 16 17 C 0.06 1.17 2.69 -66.94 -0.18 0.99 16 18 H 0.13 2.76 7.05 -51.93 -0.37 2.40 16 19 C -0.14 -2.35 5.84 -24.87 -0.15 -2.49 16 20 C 0.07 1.04 4.35 -25.37 -0.11 0.93 16 21 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 22 O -0.57 -7.52 13.26 -35.23 -0.47 -7.99 16 23 C 0.01 0.19 7.34 -2.76 -0.02 0.17 16 24 N -0.65 -11.56 7.24 -104.39 -0.76 -12.32 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 30 H 0.08 1.46 7.42 -51.93 -0.39 1.07 16 31 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 32 H 0.03 0.71 4.82 -51.93 -0.25 0.46 16 33 H 0.02 0.57 7.76 -51.93 -0.40 0.16 16 34 H 0.27 7.26 7.22 -40.82 -0.29 6.96 16 35 H 0.09 1.58 6.64 -51.93 -0.34 1.23 16 36 H 0.08 1.39 7.99 -51.93 -0.41 0.97 16 37 H 0.38 3.09 9.12 45.56 0.42 3.51 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 40 H 0.35 6.35 7.77 -39.29 -0.31 6.05 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -31.23 324.63 -6.38 -37.61 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.24 Total: 11.07 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 0.39 Total: 5.75 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.43 Total: -49.43 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.91 Total: -28.71 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.23 -6.38 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.436 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds