Wall clock time and date at job start Mon Mar 30 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46518 * 2 1 4 4 C 1.50698 * 109.47021 * 119.99834 * 2 1 3 5 5 H 1.08000 * 119.99852 * 119.99995 * 4 2 1 6 6 C 1.37871 * 120.00375 * 300.00298 * 4 2 1 7 7 N 1.31518 * 119.99917 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00179 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47114 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47466 * 120.00089 * 8 6 4 11 11 H 1.48508 * 109.47199 * 240.00062 * 8 6 4 12 12 N 1.46896 * 109.47086 * 240.00040 * 2 1 3 13 13 C 1.46905 * 110.99859 * 183.94963 * 12 2 1 14 14 C 1.46903 * 111.00238 * 60.00127 * 12 2 1 15 15 C 1.53001 * 109.47455 * 200.19899 * 14 12 2 16 16 H 1.09003 * 109.47022 * 53.69498 * 15 14 12 17 17 O 1.42900 * 109.46964 * 293.69988 * 15 14 12 18 18 C 1.52997 * 109.46954 * 173.69599 * 15 14 12 19 19 N 1.46904 * 109.46625 * 185.00033 * 18 15 14 20 20 C 1.47018 * 110.99907 * 46.32174 * 19 18 15 21 21 C 1.53094 * 109.25553 * 182.34889 * 20 19 18 22 22 O 1.43017 * 109.29486 * 303.21732 * 21 20 19 23 23 C 1.43014 * 113.73871 * 58.64889 * 22 21 20 24 24 C 1.47017 * 110.99816 * 169.99966 * 19 18 15 25 25 H 1.08994 * 109.47563 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.47159 * 60.00051 * 1 2 3 27 27 H 1.09001 * 109.46600 * 179.97438 * 1 2 3 28 28 H 0.97003 * 120.00102 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47282 * 289.23097 * 13 12 2 30 30 H 1.09003 * 109.46611 * 49.23010 * 13 12 2 31 31 H 1.08998 * 109.47035 * 169.22874 * 13 12 2 32 32 H 1.09003 * 109.47400 * 80.19634 * 14 12 2 33 33 H 1.08999 * 109.46755 * 320.20215 * 14 12 2 34 34 H 0.96706 * 113.99513 * 299.99331 * 17 15 14 35 35 H 1.08996 * 109.47568 * 65.00318 * 18 15 14 36 36 H 1.08997 * 109.47055 * 304.99685 * 18 15 14 37 37 H 1.08996 * 109.47136 * 62.43842 * 20 19 18 38 38 H 1.09002 * 109.54379 * 302.30149 * 20 19 18 39 39 H 1.09001 * 109.51044 * 183.25659 * 21 20 19 40 40 H 1.09005 * 109.50503 * 63.17212 * 21 20 19 41 41 H 1.09005 * 109.50741 * 61.26420 * 23 22 21 42 42 H 1.08995 * 109.50934 * 181.35310 * 23 22 21 43 43 H 1.09003 * 109.50425 * 57.67346 * 24 19 18 44 44 H 1.08999 * 109.50475 * 297.54278 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2870 3.6037 10 1 3.1465 -0.1875 4.8165 11 1 1.1659 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.6285 -1.0018 -3.5971 16 1 1.0936 -1.9179 -3.3462 17 8 2.9973 -1.3089 -3.8692 18 6 0.9934 -0.3628 -4.8337 19 7 0.9619 -1.3414 -5.9289 20 6 0.4660 -2.6430 -5.4583 21 6 0.5049 -3.6460 -6.6143 22 8 -0.2628 -3.1365 -7.7081 23 6 0.1941 -1.8705 -8.1918 24 6 0.1510 -0.8491 -7.0520 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7086 1.1612 3.4844 29 1 3.9194 0.1917 -1.3515 30 1 3.8143 -1.1800 -0.2221 31 1 3.8090 -1.4706 -1.9782 32 1 2.1750 0.8419 -2.6261 33 1 0.5160 0.2947 -2.2847 34 1 3.5347 -0.5388 -4.1004 35 1 1.5810 0.5035 -5.1374 36 1 -0.0232 -0.0480 -4.5984 37 1 -0.5593 -2.5349 -5.1046 38 1 1.0967 -3.0009 -4.6445 39 1 0.0843 -4.5964 -6.2859 40 1 1.5369 -3.7952 -6.9321 41 1 1.2171 -1.9673 -8.5553 42 1 -0.4510 -1.5371 -9.0046 43 1 0.5520 0.1025 -7.4008 44 1 -0.8796 -0.7125 -6.7244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081163828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:18 Heat of formation + Delta-G solvation = -73.628438 kcal Electronic energy + Delta-G solvation = -22247.252049 eV Core-core repulsion = 19007.306733 eV Total energy + Delta-G solvation = -3239.945316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84435 -38.16239 -36.21966 -35.01805 -32.67376 -31.38905 -30.36770 -29.11594 -27.66852 -25.49880 -24.32836 -24.15079 -22.93805 -21.26497 -20.31659 -19.43727 -16.86812 -16.38401 -16.28264 -15.88041 -15.67651 -15.32056 -15.22794 -14.95066 -14.47850 -14.03712 -13.85833 -13.54718 -13.21041 -12.58726 -12.39853 -12.33860 -12.04348 -11.81202 -11.58095 -11.47597 -11.08395 -10.98045 -10.82916 -10.72943 -10.65530 -10.38313 -10.20689 -10.14278 -9.92264 -9.81551 -9.25567 -8.82288 -8.46676 -8.43180 -7.14510 -6.02339 -4.06282 3.29125 3.37035 3.41919 3.56403 3.74490 4.39237 4.58805 4.67608 4.78263 4.85584 4.98308 5.05443 5.12010 5.25004 5.29210 5.38061 5.43113 5.46591 5.53851 5.57050 5.61858 5.78520 5.82253 5.86515 6.11279 6.31154 6.43303 6.53363 6.80519 6.81492 6.83503 6.96772 6.98437 7.01930 7.16226 7.51243 7.72452 7.82573 7.93658 8.21334 8.32805 8.60741 9.01152 9.58803 11.04707 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.036778 B = 0.003592 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.138286 B = 7793.132668 C = 7846.091500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.209 3.791 3 H -0.005 1.005 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.530 5.530 13 C 0.028 3.972 14 C 0.019 3.981 15 C 0.112 3.888 16 H 0.107 0.893 17 O -0.545 6.545 18 C 0.023 3.977 19 N -0.526 5.526 20 C 0.010 3.990 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.015 3.985 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.034 0.966 28 H 0.259 0.741 29 H 0.001 0.999 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.080 0.920 34 H 0.366 0.634 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -2.607 -18.479 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.103 3.897 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.254 5.254 13 C -0.120 4.120 14 C -0.111 4.111 15 C 0.052 3.948 16 H 0.124 0.876 17 O -0.349 6.349 18 C -0.105 4.105 19 N -0.252 5.252 20 C -0.118 4.118 21 C -0.012 4.012 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.113 4.113 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.212 0.788 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.730 -3.741 -18.429 18.819 hybrid contribution 0.055 1.524 1.250 1.971 sum -0.675 -2.217 -17.179 17.335 Atomic orbital electron populations 1.21880 0.97945 0.99592 0.99708 1.19271 0.92165 0.92008 0.86269 0.98705 1.21202 1.30795 1.12237 0.89714 0.91704 1.24942 0.95240 0.95104 0.99071 1.69903 1.37080 1.23160 1.23281 0.86463 0.78598 0.79640 0.82852 1.19684 1.21176 1.21032 1.62035 1.09946 1.51991 1.01440 1.22492 0.88116 0.98483 1.02904 1.22815 1.01493 0.94491 0.92308 1.22137 0.82941 0.99251 0.90439 0.87565 1.86592 1.20007 1.37148 1.91163 1.22910 1.00416 0.95304 0.91901 1.62202 1.51777 1.03006 1.08169 1.22938 0.99450 0.90458 0.98945 1.22686 0.96296 0.96259 0.85964 1.87965 1.56624 1.35727 1.50473 1.22624 1.00159 0.83207 0.95194 1.22812 0.96298 0.99095 0.93105 0.89632 0.97474 0.94684 0.93079 0.98022 0.90838 0.91290 0.95793 0.90206 0.78822 0.90414 0.93841 0.94081 0.88027 0.88478 0.92184 0.92341 0.88723 0.89852 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.81 37.16 0.33 -2.91 16 2 C 0.21 5.27 2.06 -68.87 -0.14 5.13 16 3 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -13.76 7.79 -34.44 -0.27 -14.02 16 5 H 0.06 1.79 6.46 -52.49 -0.34 1.45 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 N -0.53 -11.31 4.55 -236.28 -1.08 -12.39 16 13 C 0.03 0.57 8.94 60.07 0.54 1.10 16 14 C 0.02 0.32 4.66 -3.82 -0.02 0.30 16 15 C 0.11 1.61 2.57 -26.73 -0.07 1.54 16 16 H 0.11 1.68 5.95 -51.93 -0.31 1.37 16 17 O -0.54 -7.80 10.55 -35.23 -0.37 -8.17 16 18 C 0.02 0.28 4.92 -3.82 -0.02 0.26 16 19 N -0.53 -6.15 4.82 -234.31 -1.13 -7.28 16 20 C 0.01 0.12 4.94 -3.71 -0.02 0.10 16 21 C 0.06 0.69 7.01 37.21 0.26 0.95 16 22 O -0.39 -4.56 10.83 -35.23 -0.38 -4.94 16 23 C 0.07 0.61 7.01 37.21 0.26 0.88 16 24 C 0.02 0.15 5.63 -3.71 -0.02 0.13 16 25 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 26 H 0.01 0.14 6.04 -51.93 -0.31 -0.17 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.00 0.02 7.93 -51.93 -0.41 -0.39 16 30 H 0.07 1.62 5.92 -51.93 -0.31 1.31 16 31 H 0.07 1.25 5.87 -51.93 -0.30 0.95 16 32 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 33 H 0.08 1.42 5.53 -51.93 -0.29 1.13 16 34 H 0.37 4.25 9.05 45.56 0.41 4.66 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 1.30 5.94 -51.93 -0.31 0.99 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -29.99 332.98 -8.27 -38.26 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.67 Total: 3.09 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 0.74 Total: -5.05 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -1.58 Total: -44.56 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.75 Total: -13.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.99 -8.27 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081163828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.368 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds