Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46518 * 2 1 4 4 C 1.50698 * 109.47021 * 119.99834 * 2 1 3 5 5 H 1.08000 * 119.99852 * 119.99995 * 4 2 1 6 6 C 1.37871 * 120.00375 * 300.00298 * 4 2 1 7 7 N 1.31518 * 119.99917 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00179 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47114 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47466 * 120.00089 * 8 6 4 11 11 H 1.48508 * 109.47199 * 240.00062 * 8 6 4 12 12 N 1.46896 * 109.47086 * 240.00040 * 2 1 3 13 13 C 1.46905 * 110.99859 * 183.94963 * 12 2 1 14 14 C 1.46903 * 111.00238 * 60.00127 * 12 2 1 15 15 C 1.53001 * 109.47455 * 200.19899 * 14 12 2 16 16 H 1.09003 * 109.47022 * 53.69498 * 15 14 12 17 17 O 1.42900 * 109.46964 * 293.69988 * 15 14 12 18 18 C 1.52997 * 109.46954 * 173.69599 * 15 14 12 19 19 N 1.46904 * 109.46625 * 185.00033 * 18 15 14 20 20 C 1.47018 * 110.99907 * 46.32174 * 19 18 15 21 21 C 1.53094 * 109.25553 * 182.34889 * 20 19 18 22 22 O 1.43017 * 109.29486 * 303.21732 * 21 20 19 23 23 C 1.43014 * 113.73871 * 58.64889 * 22 21 20 24 24 C 1.47017 * 110.99816 * 169.99966 * 19 18 15 25 25 H 1.08994 * 109.47563 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.47159 * 60.00051 * 1 2 3 27 27 H 1.09001 * 109.46600 * 179.97438 * 1 2 3 28 28 H 0.97003 * 120.00102 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47282 * 289.23097 * 13 12 2 30 30 H 1.09003 * 109.46611 * 49.23010 * 13 12 2 31 31 H 1.08998 * 109.47035 * 169.22874 * 13 12 2 32 32 H 1.09003 * 109.47400 * 80.19634 * 14 12 2 33 33 H 1.08999 * 109.46755 * 320.20215 * 14 12 2 34 34 H 0.96706 * 113.99513 * 299.99331 * 17 15 14 35 35 H 1.08996 * 109.47568 * 65.00318 * 18 15 14 36 36 H 1.08997 * 109.47055 * 304.99685 * 18 15 14 37 37 H 1.08996 * 109.47136 * 62.43842 * 20 19 18 38 38 H 1.09002 * 109.54379 * 302.30149 * 20 19 18 39 39 H 1.09001 * 109.51044 * 183.25659 * 21 20 19 40 40 H 1.09005 * 109.50503 * 63.17212 * 21 20 19 41 41 H 1.09005 * 109.50741 * 61.26420 * 23 22 21 42 42 H 1.08995 * 109.50934 * 181.35310 * 23 22 21 43 43 H 1.09003 * 109.50425 * 57.67346 * 24 19 18 44 44 H 1.08999 * 109.50475 * 297.54278 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2870 3.6037 10 1 3.1465 -0.1875 4.8165 11 1 1.1659 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.6285 -1.0018 -3.5971 16 1 1.0936 -1.9179 -3.3462 17 8 2.9973 -1.3089 -3.8692 18 6 0.9934 -0.3628 -4.8337 19 7 0.9619 -1.3414 -5.9289 20 6 0.4660 -2.6430 -5.4583 21 6 0.5049 -3.6460 -6.6143 22 8 -0.2628 -3.1365 -7.7081 23 6 0.1941 -1.8705 -8.1918 24 6 0.1510 -0.8491 -7.0520 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7086 1.1612 3.4844 29 1 3.9194 0.1917 -1.3515 30 1 3.8143 -1.1800 -0.2221 31 1 3.8090 -1.4706 -1.9782 32 1 2.1750 0.8419 -2.6261 33 1 0.5160 0.2947 -2.2847 34 1 3.5347 -0.5388 -4.1004 35 1 1.5810 0.5035 -5.1374 36 1 -0.0232 -0.0480 -4.5984 37 1 -0.5593 -2.5349 -5.1046 38 1 1.0967 -3.0009 -4.6445 39 1 0.0843 -4.5964 -6.2859 40 1 1.5369 -3.7952 -6.9321 41 1 1.2171 -1.9673 -8.5553 42 1 -0.4510 -1.5371 -9.0046 43 1 0.5520 0.1025 -7.4008 44 1 -0.8796 -0.7125 -6.7244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081163828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -97.959552 kcal Electronic energy + Delta-G solvation = -22248.307125 eV Core-core repulsion = 19007.306733 eV Total energy + Delta-G solvation = -3241.000393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76280 -39.45684 -37.65128 -36.08594 -34.63080 -32.21177 -31.61252 -30.96531 -28.89002 -27.19933 -25.81617 -25.09539 -24.42468 -22.41462 -21.30834 -21.16711 -18.40489 -17.75319 -17.37762 -17.07850 -16.91864 -16.70093 -16.09748 -16.00114 -15.84709 -15.49568 -15.05951 -14.93474 -14.69198 -14.19080 -13.91599 -13.55756 -13.20711 -12.97393 -12.95036 -12.78871 -12.57329 -12.54717 -12.40817 -12.30326 -12.13061 -11.99793 -11.84377 -11.58879 -11.45282 -10.94869 -10.72096 -10.52353 -10.44073 -9.37130 -8.88009 -8.12891 -6.24055 1.39966 1.42091 1.53962 2.41096 2.66761 2.96540 3.15370 3.33433 3.59746 3.87894 3.96493 4.03012 4.13353 4.20763 4.23860 4.31231 4.38528 4.46582 4.61527 4.63301 4.68402 4.71275 4.74952 4.76536 4.83607 4.92918 4.99545 5.01739 5.03270 5.15639 5.24057 5.37777 5.49930 5.71945 5.78652 5.90110 5.97417 6.18946 6.25548 6.41732 6.76238 6.91828 6.93820 7.45220 8.93354 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.036778 B = 0.003592 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.138286 B = 7793.132668 C = 7846.091500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.213 3.787 3 H -0.040 1.040 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.539 5.539 13 C 0.037 3.963 14 C 0.020 3.980 15 C 0.128 3.872 16 H 0.092 0.908 17 O -0.554 6.554 18 C 0.032 3.968 19 N -0.531 5.531 20 C 0.012 3.988 21 C 0.067 3.933 22 O -0.406 6.406 23 C 0.062 3.938 24 C 0.015 3.985 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.005 0.995 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.379 0.621 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -2.916 -19.848 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H -0.022 1.022 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.263 5.263 13 C -0.112 4.112 14 C -0.109 4.109 15 C 0.068 3.932 16 H 0.110 0.890 17 O -0.360 6.360 18 C -0.096 4.096 19 N -0.257 5.257 20 C -0.116 4.116 21 C -0.010 4.010 22 O -0.325 6.325 23 C -0.014 4.014 24 C -0.113 4.113 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.385 -4.046 -19.825 20.237 hybrid contribution -0.027 1.649 1.604 2.301 sum -0.412 -2.397 -18.221 18.382 Atomic orbital electron populations 1.21687 0.97377 0.99170 0.99704 1.19076 0.92591 0.90137 0.87604 1.02223 1.21470 1.30904 1.12206 0.91039 0.92385 1.25709 0.95406 0.95795 1.01908 1.70023 1.37859 1.24257 1.23967 0.85482 0.78137 0.78618 0.79253 1.19241 1.20673 1.20557 1.61993 1.10706 1.51984 1.01601 1.22428 0.87417 0.99020 1.02286 1.22896 1.00992 0.95427 0.91589 1.21840 0.83265 0.97795 0.90306 0.89049 1.86555 1.20075 1.38235 1.91102 1.22773 1.00312 0.95564 0.90995 1.62236 1.52312 1.02808 1.08310 1.22887 0.98573 0.91052 0.99129 1.22713 0.96460 0.96412 0.85412 1.87946 1.57165 1.36786 1.50619 1.22803 1.00962 0.82213 0.95442 1.22893 0.95778 1.00064 0.92548 0.92209 0.94909 0.95116 0.92960 0.97650 0.93275 0.89102 0.94968 0.90779 0.77241 0.88847 0.93947 0.94985 0.89193 0.87298 0.92049 0.91949 0.86577 0.88076 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.81 71.98 0.63 -5.31 16 2 C 0.21 10.91 2.06 44.17 0.09 11.00 16 3 H -0.04 -2.27 8.14 -2.39 -0.02 -2.29 16 4 C -0.52 -28.84 7.79 25.60 0.20 -28.64 16 5 H 0.06 3.25 6.46 -2.91 -0.02 3.23 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.54 -22.88 4.55 -901.45 -4.10 -26.98 16 13 C 0.04 1.45 8.94 127.69 1.14 2.59 16 14 C 0.02 0.67 4.66 86.30 0.40 1.08 16 15 C 0.13 3.47 2.57 30.59 0.08 3.55 16 16 H 0.09 2.81 5.95 -2.39 -0.01 2.80 16 17 O -0.55 -14.72 10.55 -148.98 -1.57 -16.29 16 18 C 0.03 0.70 4.92 86.30 0.42 1.12 16 19 N -0.53 -11.36 4.82 -895.21 -4.32 -15.68 16 20 C 0.01 0.26 4.94 86.31 0.43 0.69 16 21 C 0.07 1.33 7.01 72.01 0.50 1.84 16 22 O -0.41 -8.81 10.83 -148.98 -1.61 -10.43 16 23 C 0.06 1.03 7.01 72.02 0.50 1.53 16 24 C 0.02 0.27 5.63 86.31 0.49 0.75 16 25 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 26 H 0.03 1.39 6.04 -2.39 -0.01 1.37 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 30 H 0.05 2.17 5.92 -2.39 -0.01 2.15 16 31 H 0.09 3.18 5.87 -2.39 -0.01 3.16 16 32 H 0.03 1.03 7.85 -2.39 -0.02 1.02 16 33 H 0.07 2.56 5.53 -2.39 -0.01 2.55 16 34 H 0.38 7.82 9.05 -74.05 -0.67 7.15 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 2.23 5.94 -2.39 -0.01 2.22 16 39 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -63.90 332.98 -3.68 -67.59 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.31 Total: 17.49 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.34 Total: -8.77 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -8.18 Total: -95.67 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -3.19 Total: -26.72 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.90 -3.68 -67.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081163828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.374 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds