Wall clock time and date at job start Mon Mar 30 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46612 * 2 1 4 4 C 1.50696 * 109.46953 * 240.00589 * 2 1 3 5 5 H 1.08003 * 119.99900 * 239.99887 * 4 2 1 6 6 C 1.37877 * 120.00391 * 59.99883 * 4 2 1 7 7 N 1.31514 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00133 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47030 * 89.99802 * 8 6 4 10 10 H 1.48501 * 109.47198 * 209.99511 * 8 6 4 11 11 H 1.48498 * 109.47109 * 329.99832 * 8 6 4 12 12 N 1.46893 * 109.47566 * 120.00120 * 2 1 3 13 13 C 1.46892 * 111.00350 * 176.04726 * 12 2 1 14 14 C 1.46904 * 110.99984 * 300.00215 * 12 2 1 15 15 C 1.53001 * 109.46850 * 169.99661 * 14 12 2 16 16 H 1.09003 * 109.47119 * 60.00136 * 15 14 12 17 17 O 1.42898 * 109.47425 * 299.99513 * 15 14 12 18 18 C 1.53006 * 109.46809 * 179.97438 * 15 14 12 19 19 N 1.46903 * 109.46888 * 182.83420 * 18 15 14 20 20 C 1.47015 * 110.99808 * 75.84097 * 19 18 15 21 21 C 1.53095 * 109.25302 * 182.39116 * 20 19 18 22 22 O 1.43016 * 109.25837 * 303.14547 * 21 20 19 23 23 C 1.43014 * 113.73769 * 58.67640 * 22 21 20 24 24 C 1.47021 * 110.99600 * 199.47162 * 19 18 15 25 25 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47102 * 299.99610 * 1 2 3 27 27 H 1.08997 * 109.47563 * 59.99738 * 1 2 3 28 28 H 0.96999 * 120.00322 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47516 * 183.95537 * 13 12 2 30 30 H 1.08999 * 109.47268 * 303.95769 * 13 12 2 31 31 H 1.09002 * 109.47174 * 63.95346 * 13 12 2 32 32 H 1.09003 * 109.47149 * 49.99815 * 14 12 2 33 33 H 1.08993 * 109.46850 * 289.99686 * 14 12 2 34 34 H 0.96696 * 114.00560 * 300.00848 * 17 15 14 35 35 H 1.08999 * 109.47323 * 62.83438 * 18 15 14 36 36 H 1.08994 * 109.47041 * 302.83687 * 18 15 14 37 37 H 1.09001 * 109.51073 * 62.45360 * 20 19 18 38 38 H 1.09000 * 109.50610 * 302.32125 * 20 19 18 39 39 H 1.09004 * 109.50360 * 183.21726 * 21 20 19 40 40 H 1.08997 * 109.54565 * 63.11157 * 21 20 19 41 41 H 1.09006 * 109.50879 * 61.26276 * 23 22 21 42 42 H 1.08995 * 109.50657 * 181.39106 * 23 22 21 43 43 H 1.08997 * 109.50814 * 297.54071 * 24 19 18 44 44 H 1.09005 * 109.50312 * 57.67721 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0264 2.4210 15 6 1.8628 -0.9044 3.6340 16 1 2.9393 -1.0632 3.6987 17 8 1.2031 -2.1642 3.4938 18 6 1.3728 -0.2104 4.9065 19 7 1.7346 -1.0213 6.0768 20 6 3.1657 -0.8899 6.3867 21 6 3.5106 -1.7949 7.5724 22 8 2.6817 -1.4502 8.6857 23 6 1.2815 -1.5674 8.4191 24 6 0.9139 -0.6602 7.2420 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.7080 1.1611 -3.4843 29 1 3.8165 -1.3721 2.0498 30 1 3.8070 -1.2913 0.2717 31 1 3.9192 0.2045 1.2299 32 1 0.4723 0.1323 2.3564 33 1 2.0519 0.9345 2.5280 34 1 0.2404 -2.0992 3.4302 35 1 0.2896 -0.0965 4.8642 36 1 1.8385 0.7718 4.9870 37 1 3.3892 0.1459 6.6423 38 1 3.7548 -1.1866 5.5190 39 1 4.5578 -1.6579 7.8422 40 1 3.3384 -2.8358 7.2989 41 1 1.0438 -2.6016 8.1697 42 1 0.7166 -1.2661 9.3012 43 1 1.1015 0.3792 7.5112 44 1 -0.1407 -0.7893 6.9984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081163830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:20 Heat of formation + Delta-G solvation = -76.897007 kcal Electronic energy + Delta-G solvation = -22127.549961 eV Core-core repulsion = 18887.462909 eV Total energy + Delta-G solvation = -3240.087052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80255 -38.06087 -36.21017 -34.99835 -32.73525 -31.41025 -30.34377 -29.11205 -27.60127 -25.55891 -24.38887 -24.20018 -23.02183 -20.97267 -20.56613 -19.36965 -16.86033 -16.43040 -16.29169 -15.87589 -15.71167 -15.31075 -15.21223 -14.66291 -14.61186 -14.02949 -13.80818 -13.70622 -13.21125 -12.65471 -12.55595 -12.31873 -12.07199 -11.74220 -11.58545 -11.36430 -11.10398 -11.06306 -10.91359 -10.77140 -10.67732 -10.28694 -10.14157 -10.08054 -9.99886 -9.85675 -9.37761 -8.85214 -8.46157 -8.41453 -7.11687 -6.01130 -4.05188 3.31544 3.37686 3.41147 3.50510 3.68531 4.40601 4.61316 4.70962 4.76783 4.78991 4.94499 5.04222 5.08498 5.18962 5.29778 5.33124 5.40337 5.43614 5.51778 5.56483 5.62041 5.66233 5.74715 5.78588 6.11045 6.23625 6.34735 6.43062 6.77577 6.79195 6.80671 6.82748 6.92896 7.03472 7.15524 7.50916 7.71734 7.83599 8.14257 8.23427 8.32905 8.61589 9.01756 9.59866 11.05848 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.044890 B = 0.003466 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.595471 B = 8076.899669 C = 8357.209504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.524 5.524 13 C 0.037 3.963 14 C 0.019 3.981 15 C 0.122 3.878 16 H 0.090 0.910 17 O -0.534 6.534 18 C 0.022 3.978 19 N -0.525 5.525 20 C 0.016 3.984 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 H 0.035 0.965 26 H 0.006 0.994 27 H 0.084 0.916 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.006 0.994 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.366 0.634 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.039 0.961 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -1.692 19.042 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.248 5.248 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.061 3.939 16 H 0.108 0.892 17 O -0.337 6.337 18 C -0.107 4.107 19 N -0.249 5.249 20 C -0.112 4.112 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.013 4.013 24 C -0.111 4.111 25 H 0.055 0.945 26 H 0.025 0.975 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.025 0.975 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.212 0.788 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.121 -2.703 18.974 19.198 hybrid contribution 0.069 1.652 -1.041 1.954 sum 1.190 -1.050 17.932 18.002 Atomic orbital electron populations 1.21849 0.97807 0.99667 0.99675 1.19253 0.92299 0.91834 0.86092 0.98736 1.21170 1.30919 1.12201 0.89726 0.91779 1.24937 0.95252 0.95074 0.99048 1.69891 1.37076 1.23118 1.23381 0.86511 0.79263 0.79279 0.82430 1.20635 1.21395 1.19918 1.62024 1.09122 1.52171 1.01483 1.22244 0.88895 0.98368 1.01692 1.22804 1.01369 0.94809 0.92101 1.21825 0.97392 0.84517 0.90130 0.89189 1.86586 1.23053 1.28225 1.95846 1.22943 1.01338 0.94861 0.91512 1.62128 1.03530 1.55340 1.03941 1.22835 0.89938 0.98953 0.99465 1.22664 0.94727 0.98351 0.85510 1.87961 1.16727 1.89296 1.36780 1.22653 0.82108 0.99389 0.97122 1.22810 0.98761 0.98030 0.91513 0.94546 0.97548 0.89706 0.93029 0.93760 0.90403 0.97534 0.90536 0.95825 0.78809 0.90423 0.93928 0.94192 0.89325 0.88552 0.91982 0.92099 0.88658 0.94278 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.76 37.16 0.33 -2.87 16 2 C 0.21 5.34 2.06 -68.87 -0.14 5.19 16 3 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 4 C -0.50 -13.80 7.88 -34.44 -0.27 -14.08 16 5 H 0.06 1.77 6.41 -52.48 -0.34 1.43 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.52 -11.26 4.49 -236.30 -1.06 -12.32 16 13 C 0.04 0.73 9.04 60.06 0.54 1.28 16 14 C 0.02 0.33 4.44 -3.82 -0.02 0.31 16 15 C 0.12 1.79 2.91 -26.73 -0.08 1.71 16 16 H 0.09 1.39 5.22 -51.93 -0.27 1.11 16 17 O -0.53 -8.58 13.12 -35.23 -0.46 -9.05 16 18 C 0.02 0.26 4.65 -3.82 -0.02 0.25 16 19 N -0.52 -6.06 4.57 -234.30 -1.07 -7.13 16 20 C 0.02 0.18 5.47 -3.71 -0.02 0.16 16 21 C 0.06 0.64 7.01 37.21 0.26 0.90 16 22 O -0.39 -4.36 10.83 -35.23 -0.38 -4.74 16 23 C 0.06 0.59 7.01 37.21 0.26 0.86 16 24 C 0.02 0.17 5.60 -3.71 -0.02 0.15 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 27 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.78 6.47 -51.93 -0.34 0.45 16 30 H 0.08 1.69 6.10 -51.93 -0.32 1.37 16 31 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.08 1.33 5.83 -51.93 -0.30 1.02 16 33 H 0.02 0.42 8.12 -51.93 -0.42 -0.01 16 34 H 0.37 4.94 9.05 45.56 0.41 5.35 16 35 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.04 0.50 7.99 -51.93 -0.41 0.09 16 37 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 38 H 0.09 0.98 6.78 -51.93 -0.35 0.62 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.74 8.02 -51.93 -0.42 0.32 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -30.53 337.00 -8.30 -38.83 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.74 Total: 2.48 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 0.73 Total: -4.64 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -1.51 Total: -44.37 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.84 Total: -13.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.53 -8.30 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081163830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.069 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds