Wall clock time and date at job start Mon Mar 30 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46612 * 2 1 4 4 C 1.50696 * 109.46953 * 240.00589 * 2 1 3 5 5 H 1.08003 * 119.99900 * 239.99887 * 4 2 1 6 6 C 1.37877 * 120.00391 * 59.99883 * 4 2 1 7 7 N 1.31514 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00133 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47030 * 89.99802 * 8 6 4 10 10 H 1.48501 * 109.47198 * 209.99511 * 8 6 4 11 11 H 1.48498 * 109.47109 * 329.99832 * 8 6 4 12 12 N 1.46893 * 109.47566 * 120.00120 * 2 1 3 13 13 C 1.46892 * 111.00350 * 176.04726 * 12 2 1 14 14 C 1.46904 * 110.99984 * 300.00215 * 12 2 1 15 15 C 1.53001 * 109.46850 * 169.99661 * 14 12 2 16 16 H 1.09003 * 109.47119 * 60.00136 * 15 14 12 17 17 O 1.42898 * 109.47425 * 299.99513 * 15 14 12 18 18 C 1.53006 * 109.46809 * 179.97438 * 15 14 12 19 19 N 1.46903 * 109.46888 * 182.83420 * 18 15 14 20 20 C 1.47015 * 110.99808 * 75.84097 * 19 18 15 21 21 C 1.53095 * 109.25302 * 182.39116 * 20 19 18 22 22 O 1.43016 * 109.25837 * 303.14547 * 21 20 19 23 23 C 1.43014 * 113.73769 * 58.67640 * 22 21 20 24 24 C 1.47021 * 110.99600 * 199.47162 * 19 18 15 25 25 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47102 * 299.99610 * 1 2 3 27 27 H 1.08997 * 109.47563 * 59.99738 * 1 2 3 28 28 H 0.96999 * 120.00322 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47516 * 183.95537 * 13 12 2 30 30 H 1.08999 * 109.47268 * 303.95769 * 13 12 2 31 31 H 1.09002 * 109.47174 * 63.95346 * 13 12 2 32 32 H 1.09003 * 109.47149 * 49.99815 * 14 12 2 33 33 H 1.08993 * 109.46850 * 289.99686 * 14 12 2 34 34 H 0.96696 * 114.00560 * 300.00848 * 17 15 14 35 35 H 1.08999 * 109.47323 * 62.83438 * 18 15 14 36 36 H 1.08994 * 109.47041 * 302.83687 * 18 15 14 37 37 H 1.09001 * 109.51073 * 62.45360 * 20 19 18 38 38 H 1.09000 * 109.50610 * 302.32125 * 20 19 18 39 39 H 1.09004 * 109.50360 * 183.21726 * 21 20 19 40 40 H 1.08997 * 109.54565 * 63.11157 * 21 20 19 41 41 H 1.09006 * 109.50879 * 61.26276 * 23 22 21 42 42 H 1.08995 * 109.50657 * 181.39106 * 23 22 21 43 43 H 1.08997 * 109.50814 * 297.54071 * 24 19 18 44 44 H 1.09005 * 109.50312 * 57.67721 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0264 2.4210 15 6 1.8628 -0.9044 3.6340 16 1 2.9393 -1.0632 3.6987 17 8 1.2031 -2.1642 3.4938 18 6 1.3728 -0.2104 4.9065 19 7 1.7346 -1.0213 6.0768 20 6 3.1657 -0.8899 6.3867 21 6 3.5106 -1.7949 7.5724 22 8 2.6817 -1.4502 8.6857 23 6 1.2815 -1.5674 8.4191 24 6 0.9139 -0.6602 7.2420 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.7080 1.1611 -3.4843 29 1 3.8165 -1.3721 2.0498 30 1 3.8070 -1.2913 0.2717 31 1 3.9192 0.2045 1.2299 32 1 0.4723 0.1323 2.3564 33 1 2.0519 0.9345 2.5280 34 1 0.2404 -2.0992 3.4302 35 1 0.2896 -0.0965 4.8642 36 1 1.8385 0.7718 4.9870 37 1 3.3892 0.1459 6.6423 38 1 3.7548 -1.1866 5.5190 39 1 4.5578 -1.6579 7.8422 40 1 3.3384 -2.8358 7.2989 41 1 1.0438 -2.6016 8.1697 42 1 0.7166 -1.2661 9.3012 43 1 1.1015 0.3792 7.5112 44 1 -0.1407 -0.7893 6.9984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081163830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:20 Heat of formation + Delta-G solvation = -101.729110 kcal Electronic energy + Delta-G solvation = -22128.626761 eV Core-core repulsion = 18887.462909 eV Total energy + Delta-G solvation = -3241.163853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66378 -39.41441 -37.60477 -36.06948 -34.69608 -32.18070 -31.71081 -30.82253 -28.86712 -27.18434 -26.03259 -25.01060 -24.42214 -22.27431 -21.43177 -21.10289 -18.43550 -17.69039 -17.37701 -17.13997 -16.82635 -16.64919 -16.03662 -15.95769 -15.80077 -15.49596 -15.26123 -14.87315 -14.70724 -14.19247 -13.85993 -13.64967 -13.34658 -12.98849 -12.86418 -12.77968 -12.58204 -12.52280 -12.37968 -12.24791 -12.09927 -11.96272 -11.91172 -11.52980 -11.46584 -10.97370 -10.83972 -10.50801 -10.48042 -9.33757 -8.86819 -8.11732 -6.23016 1.41964 1.43107 1.53034 2.41756 2.63222 2.94954 3.16424 3.35897 3.69793 3.88533 3.92785 3.99870 4.15991 4.17643 4.21302 4.32540 4.37496 4.45722 4.56599 4.61123 4.64097 4.71574 4.72566 4.77365 4.81321 4.90355 4.92838 5.01659 5.02689 5.07813 5.14905 5.28843 5.50863 5.72507 5.79418 5.92071 5.97641 6.17497 6.27201 6.39817 6.75242 6.91807 7.07737 7.46238 8.94234 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.044890 B = 0.003466 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.595471 B = 8076.899669 C = 8357.209504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.041 1.041 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.532 5.532 13 C 0.041 3.959 14 C 0.021 3.979 15 C 0.135 3.865 16 H 0.084 0.916 17 O -0.551 6.551 18 C 0.032 3.968 19 N -0.536 5.536 20 C 0.016 3.984 21 C 0.065 3.935 22 O -0.405 6.405 23 C 0.062 3.938 24 C 0.018 3.982 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.005 0.995 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.377 0.623 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.038 0.962 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -2.232 20.220 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.023 1.023 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.256 5.256 13 C -0.107 4.107 14 C -0.109 4.109 15 C 0.075 3.925 16 H 0.102 0.898 17 O -0.356 6.356 18 C -0.097 4.097 19 N -0.261 5.261 20 C -0.113 4.113 21 C -0.011 4.011 22 O -0.324 6.324 23 C -0.015 4.015 24 C -0.110 4.110 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.225 0.775 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.135 0.865 43 H 0.056 0.944 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.028 -3.249 20.175 20.461 hybrid contribution 0.094 1.824 -1.346 2.269 sum 1.122 -1.424 18.829 18.916 Atomic orbital electron populations 1.21648 0.97067 0.99299 0.99725 1.19062 0.92850 0.89921 0.87365 1.02327 1.21448 1.31052 1.12191 0.91072 0.92434 1.25699 0.95416 0.95756 1.01868 1.70013 1.37849 1.24204 1.24025 0.85540 0.78865 0.78237 0.78890 1.20137 1.20937 1.19388 1.61964 1.09858 1.52095 1.01673 1.22196 0.88267 0.98484 1.01787 1.22889 1.01283 0.95220 0.91470 1.21650 0.97067 0.83748 0.90080 0.89847 1.86554 1.24186 1.28904 1.95916 1.22757 1.02004 0.94498 0.90430 1.62094 1.04106 1.55451 1.04461 1.22852 0.89660 0.99104 0.99643 1.22723 0.95583 0.97820 0.85023 1.87943 1.17716 1.89362 1.37356 1.22801 0.81492 0.99277 0.97889 1.22868 0.99158 0.98047 0.90916 0.94906 0.94813 0.92328 0.92955 0.91160 0.92467 0.97616 0.90307 0.95815 0.77547 0.89165 0.93629 0.94268 0.89769 0.86891 0.92409 0.92285 0.86537 0.94361 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.76 71.98 0.63 -5.14 16 2 C 0.21 10.99 2.06 44.17 0.09 11.08 16 3 H -0.04 -2.33 8.14 -2.39 -0.02 -2.35 16 4 C -0.52 -28.91 7.88 25.60 0.20 -28.71 16 5 H 0.06 3.21 6.41 -2.91 -0.02 3.19 16 6 C 0.01 0.62 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 N -0.53 -22.67 4.49 -901.51 -4.05 -26.71 16 13 C 0.04 1.64 9.04 127.69 1.15 2.79 16 14 C 0.02 0.69 4.44 86.30 0.38 1.08 16 15 C 0.13 3.73 2.91 30.60 0.09 3.82 16 16 H 0.08 2.43 5.22 -2.39 -0.01 2.42 16 17 O -0.55 -16.71 13.12 -148.98 -1.95 -18.66 16 18 C 0.03 0.69 4.65 86.30 0.40 1.09 16 19 N -0.54 -11.28 4.57 -895.18 -4.09 -15.38 16 20 C 0.02 0.31 5.47 86.31 0.47 0.79 16 21 C 0.07 1.20 7.01 72.01 0.50 1.70 16 22 O -0.40 -8.33 10.83 -148.98 -1.61 -9.94 16 23 C 0.06 1.01 7.01 72.01 0.50 1.52 16 24 C 0.02 0.31 5.60 86.31 0.48 0.79 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 1.40 6.20 -2.38 -0.01 1.38 16 27 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.07 2.41 6.47 -2.39 -0.02 2.40 16 30 H 0.06 2.50 6.10 -2.39 -0.01 2.48 16 31 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.08 2.60 5.83 -2.39 -0.01 2.59 16 33 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 34 H 0.38 9.43 9.05 -74.06 -0.67 8.76 16 35 H 0.09 1.74 7.86 -2.39 -0.02 1.72 16 36 H 0.05 0.98 7.99 -2.39 -0.02 0.96 16 37 H 0.04 0.79 8.13 -2.39 -0.02 0.77 16 38 H 0.08 1.74 6.78 -2.39 -0.02 1.72 16 39 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.10 1.42 8.02 -2.38 -0.02 1.40 16 Total: -1.00 -64.68 337.00 -3.77 -68.45 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.31 Total: 17.26 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.37 Total: -8.13 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -7.90 Total: -95.05 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -3.57 Total: -28.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.68 -3.77 -68.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081163830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.278 kcal (2) G-P(sol) polarization free energy of solvation -64.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds