Wall clock time and date at job start Mon Mar 30 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00170 * 2 1 4 4 C 1.52996 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47198 * 64.99959 * 4 3 2 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 3 7 7 C 1.50703 * 109.47219 * 269.99493 * 6 5 4 8 8 H 1.07996 * 119.99587 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00204 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99711 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47162 * 90.00216 * 11 9 7 13 13 H 1.48504 * 109.46778 * 209.99667 * 11 9 7 14 14 H 1.48495 * 109.47398 * 329.99635 * 11 9 7 15 15 C 1.34784 * 119.99893 * 90.00083 * 5 4 3 16 16 O 1.21274 * 119.99897 * 179.73022 * 15 5 4 17 17 C 1.50695 * 119.99635 * 0.02562 * 15 5 4 18 18 H 1.08996 * 109.50981 * 320.08704 * 17 15 5 19 19 C 1.53093 * 109.50763 * 80.21919 * 17 15 5 20 20 O 1.43015 * 109.26220 * 176.78011 * 19 17 15 21 21 C 1.43017 * 113.73802 * 301.33136 * 20 19 17 22 22 C 1.53099 * 109.25727 * 58.66553 * 21 20 19 23 23 N 1.47010 * 109.25977 * 303.15396 * 22 21 20 24 24 H 1.09004 * 109.46871 * 59.99549 * 1 2 3 25 25 H 1.09004 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47465 * 300.00154 * 1 2 3 27 27 H 1.09007 * 109.46729 * 60.00107 * 3 2 1 28 28 H 1.08996 * 109.46962 * 300.00131 * 3 2 1 29 29 H 1.08997 * 109.47172 * 305.00197 * 4 3 2 30 30 H 1.08998 * 109.47554 * 185.00192 * 4 3 2 31 31 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 32 32 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 33 33 H 0.97000 * 120.00290 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.50964 * 296.71880 * 19 17 15 35 35 H 1.09004 * 109.50618 * 56.84590 * 19 17 15 36 36 H 1.09001 * 109.50482 * 298.73410 * 21 20 19 37 37 H 1.08993 * 109.54334 * 178.62608 * 21 20 19 38 38 H 1.09007 * 109.50501 * 183.21504 * 22 21 20 39 39 H 1.09005 * 109.54253 * 63.11569 * 22 21 20 40 40 H 1.00904 * 111.00021 * 294.83498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1062 -0.8925 -1.3403 7 6 5.5017 -1.2981 -0.9413 8 1 6.2203 -0.5461 -0.6506 9 6 5.8613 -2.6291 -0.9483 10 7 4.9867 -3.5447 -1.3038 11 14 7.5909 -3.1319 -0.4530 12 1 7.6331 -3.3847 1.0097 13 1 7.9742 -4.3686 -1.1803 14 1 8.5402 -2.0423 -0.7948 15 6 4.2634 1.3330 -2.3200 16 8 4.6333 0.8195 -3.3545 17 6 4.1306 2.8313 -2.2278 18 1 3.2380 3.0830 -1.6551 19 6 5.3652 3.4122 -1.5334 20 8 5.2689 4.8390 -1.5157 21 6 5.1630 5.4251 -2.8160 22 6 3.9263 4.8645 -3.5233 23 7 4.0227 3.3987 -3.5797 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8507 0.5686 0.8427 30 1 3.9785 2.1765 0.0902 31 1 3.3858 -1.3632 -0.6713 32 1 3.9139 -1.2122 -2.3645 33 1 5.2396 -4.4812 -1.3084 34 1 5.4175 3.0382 -0.5110 35 1 6.2621 3.1146 -2.0768 36 1 6.0540 5.1860 -3.3966 37 1 5.0694 6.5069 -2.7217 38 1 3.8733 5.2651 -4.5357 39 1 3.0303 5.1495 -2.9718 40 1 4.7984 3.1092 -4.1563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088372437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:28 Heat of formation + Delta-G solvation = -112.484791 kcal Electronic energy + Delta-G solvation = -22425.063654 eV Core-core repulsion = 19047.600305 eV Total energy + Delta-G solvation = -3377.463349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20908 -38.45986 -37.43514 -34.98169 -34.31449 -32.73721 -31.39790 -29.57110 -27.39493 -26.09794 -25.91998 -24.54866 -22.74514 -22.59187 -21.14823 -18.76262 -17.03336 -16.56085 -16.51573 -16.15641 -15.81566 -15.64893 -15.42660 -15.17720 -14.72647 -14.60879 -13.96635 -13.85321 -13.45132 -12.79192 -12.70605 -12.40661 -12.16535 -11.83111 -11.69016 -11.51405 -11.47317 -11.22050 -11.16232 -10.88067 -10.84048 -10.40178 -10.26714 -10.10930 -9.57641 -9.41274 -9.00588 -8.35684 -8.22769 -7.63449 -5.96824 -4.01312 3.25205 3.33472 3.39931 3.43466 3.59613 3.78619 4.06324 4.30702 4.49504 4.68183 4.85564 4.94619 4.96458 5.07602 5.20139 5.30710 5.37271 5.38967 5.45309 5.48704 5.54616 5.57842 5.63337 5.67182 5.76589 5.78935 5.88136 6.21926 6.75654 6.90413 7.25482 7.29757 7.41928 7.57098 7.62673 8.00506 8.31854 8.44724 8.93647 9.09302 9.62545 11.11193 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.006657 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.878925 B = 4204.888760 C = 5432.177726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.106 3.894 5 N -0.585 5.585 6 C 0.250 3.750 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.513 3.487 16 O -0.529 6.529 17 C 0.032 3.968 18 H 0.104 0.896 19 C 0.032 3.968 20 O -0.378 6.378 21 C 0.017 3.983 22 C 0.023 3.977 23 N -0.665 5.665 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 16.452 1.847 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.019 4.019 5 N -0.316 5.316 6 C 0.131 3.869 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.298 3.702 16 O -0.405 6.405 17 C -0.081 4.081 18 H 0.122 0.878 19 C -0.047 4.047 20 O -0.296 6.296 21 C -0.062 4.062 22 C -0.107 4.107 23 N -0.297 5.297 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.917 15.768 1.379 16.898 hybrid contribution 1.554 0.024 0.352 1.594 sum -4.362 15.792 1.731 16.475 Atomic orbital electron populations 1.22703 0.81987 1.02620 0.99145 1.88098 1.18781 1.26819 1.95143 1.23112 0.95181 0.85554 0.99638 1.21646 0.91480 0.99021 0.89733 1.48155 1.63980 1.09924 1.09590 1.19335 0.96761 0.71785 0.98987 1.21450 0.97442 0.92216 1.45442 0.92688 1.24911 0.97320 0.96434 0.95369 1.69945 1.34334 1.00969 1.47877 0.86545 0.84697 0.78058 0.78360 1.20679 1.21160 1.20040 1.19870 0.78779 0.87216 0.84369 1.90664 1.46165 1.74356 1.29318 1.22262 0.99709 0.94416 0.91761 0.87766 1.23243 0.97130 0.81123 1.03162 1.88058 1.94539 1.19390 1.27600 1.23342 0.98293 0.99029 0.85502 1.22697 0.98169 0.88147 1.01656 1.60602 1.51153 1.07474 1.10479 0.94552 0.89736 0.94674 0.92984 0.93607 0.88651 0.90073 0.93488 0.94227 0.92821 0.87379 0.92066 0.93005 0.88339 0.89334 0.89975 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.45 9.53 -35.23 -0.34 -6.78 16 3 C 0.04 0.63 6.09 37.16 0.23 0.85 16 4 C 0.11 1.71 5.42 -4.04 -0.02 1.69 16 5 N -0.59 -12.41 2.42 -175.06 -0.42 -12.83 16 6 C 0.25 6.67 4.98 -5.19 -0.03 6.65 16 7 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 8 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.51 10.67 6.93 -10.98 -0.08 10.60 16 16 O -0.53 -13.33 15.71 5.56 0.09 -13.24 16 17 C 0.03 0.50 2.19 -68.76 -0.15 0.35 16 18 H 0.10 1.48 6.19 -51.93 -0.32 1.16 16 19 C 0.03 0.46 6.04 37.21 0.22 0.68 16 20 O -0.38 -4.97 10.83 -35.23 -0.38 -5.35 16 21 C 0.02 0.17 7.01 37.21 0.26 0.44 16 22 C 0.02 0.25 6.76 -3.71 -0.03 0.22 16 23 N -0.67 -9.70 6.40 -107.68 -0.69 -10.39 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.05 0.65 7.28 -51.93 -0.38 0.27 16 29 H 0.10 1.63 8.07 -51.93 -0.42 1.21 16 30 H 0.08 1.06 4.75 -51.93 -0.25 0.81 16 31 H 0.05 1.31 7.11 -51.93 -0.37 0.94 16 32 H 0.04 1.21 7.43 -51.92 -0.39 0.82 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.11 1.45 6.32 -51.93 -0.33 1.12 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.35 5.44 8.24 -39.29 -0.32 5.12 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -34.43 325.07 -6.14 -40.58 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.12 Total: 2.97 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 1.10 Total: 9.35 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.38 Total: -49.47 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.63 Total: -25.37 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.43 -6.14 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088372437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.907 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds