Wall clock time and date at job start Mon Mar 30 2020 05:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00170 * 2 1 4 4 C 1.52996 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47198 * 64.99959 * 4 3 2 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 3 7 7 C 1.50703 * 109.47219 * 269.99493 * 6 5 4 8 8 H 1.07996 * 119.99587 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00204 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99711 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47162 * 90.00216 * 11 9 7 13 13 H 1.48504 * 109.46778 * 209.99667 * 11 9 7 14 14 H 1.48495 * 109.47398 * 329.99635 * 11 9 7 15 15 C 1.34784 * 119.99893 * 90.00083 * 5 4 3 16 16 O 1.21274 * 119.99897 * 179.73022 * 15 5 4 17 17 C 1.50695 * 119.99635 * 0.02562 * 15 5 4 18 18 H 1.08996 * 109.50981 * 320.08704 * 17 15 5 19 19 C 1.53093 * 109.50763 * 80.21919 * 17 15 5 20 20 O 1.43015 * 109.26220 * 176.78011 * 19 17 15 21 21 C 1.43017 * 113.73802 * 301.33136 * 20 19 17 22 22 C 1.53099 * 109.25727 * 58.66553 * 21 20 19 23 23 N 1.47010 * 109.25977 * 303.15396 * 22 21 20 24 24 H 1.09004 * 109.46871 * 59.99549 * 1 2 3 25 25 H 1.09004 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47465 * 300.00154 * 1 2 3 27 27 H 1.09007 * 109.46729 * 60.00107 * 3 2 1 28 28 H 1.08996 * 109.46962 * 300.00131 * 3 2 1 29 29 H 1.08997 * 109.47172 * 305.00197 * 4 3 2 30 30 H 1.08998 * 109.47554 * 185.00192 * 4 3 2 31 31 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 32 32 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 33 33 H 0.97000 * 120.00290 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.50964 * 296.71880 * 19 17 15 35 35 H 1.09004 * 109.50618 * 56.84590 * 19 17 15 36 36 H 1.09001 * 109.50482 * 298.73410 * 21 20 19 37 37 H 1.08993 * 109.54334 * 178.62608 * 21 20 19 38 38 H 1.09007 * 109.50501 * 183.21504 * 22 21 20 39 39 H 1.09005 * 109.54253 * 63.11569 * 22 21 20 40 40 H 1.00904 * 111.00021 * 294.83498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1062 -0.8925 -1.3403 7 6 5.5017 -1.2981 -0.9413 8 1 6.2203 -0.5461 -0.6506 9 6 5.8613 -2.6291 -0.9483 10 7 4.9867 -3.5447 -1.3038 11 14 7.5909 -3.1319 -0.4530 12 1 7.6331 -3.3847 1.0097 13 1 7.9742 -4.3686 -1.1803 14 1 8.5402 -2.0423 -0.7948 15 6 4.2634 1.3330 -2.3200 16 8 4.6333 0.8195 -3.3545 17 6 4.1306 2.8313 -2.2278 18 1 3.2380 3.0830 -1.6551 19 6 5.3652 3.4122 -1.5334 20 8 5.2689 4.8390 -1.5157 21 6 5.1630 5.4251 -2.8160 22 6 3.9263 4.8645 -3.5233 23 7 4.0227 3.3987 -3.5797 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8507 0.5686 0.8427 30 1 3.9785 2.1765 0.0902 31 1 3.3858 -1.3632 -0.6713 32 1 3.9139 -1.2122 -2.3645 33 1 5.2396 -4.4812 -1.3084 34 1 5.4175 3.0382 -0.5110 35 1 6.2621 3.1146 -2.0768 36 1 6.0540 5.1860 -3.3966 37 1 5.0694 6.5069 -2.7217 38 1 3.8733 5.2651 -4.5357 39 1 3.0303 5.1495 -2.9718 40 1 4.7984 3.1092 -4.1563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088372437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:27 Heat of formation + Delta-G solvation = -140.771300 kcal Electronic energy + Delta-G solvation = -22426.290249 eV Core-core repulsion = 19047.600305 eV Total energy + Delta-G solvation = -3378.689944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53435 -39.76183 -38.73227 -36.62120 -35.47849 -34.80866 -32.60259 -31.04634 -29.13204 -27.27320 -27.10873 -25.90414 -24.50831 -23.84562 -22.27866 -20.29447 -18.63938 -18.39382 -17.82434 -17.37092 -17.02581 -16.93032 -16.61072 -16.41587 -16.23148 -15.94300 -15.41892 -15.23892 -14.95773 -14.25690 -14.04729 -13.81303 -13.56632 -13.25309 -13.06680 -12.93645 -12.85989 -12.68197 -12.52953 -12.43526 -12.18489 -12.14528 -11.94405 -11.67805 -11.25811 -10.68766 -10.61502 -10.53455 -9.46308 -9.30601 -8.18200 -6.33101 1.37054 1.40223 1.50058 1.68814 2.15222 2.41758 2.71602 2.96427 3.11055 3.14652 3.52722 3.61785 3.80886 4.10224 4.11800 4.15575 4.24976 4.28185 4.40209 4.45866 4.51718 4.54473 4.60187 4.63384 4.76612 4.86848 4.93318 4.97495 5.17472 5.30232 5.57692 5.74540 5.87238 5.94720 6.10461 6.16573 6.33590 6.73065 6.79602 7.28772 7.44261 8.89221 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.006657 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.878925 B = 4204.888760 C = 5432.177726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.044 3.956 4 C 0.100 3.900 5 N -0.590 5.590 6 C 0.272 3.728 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.968 3.032 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.505 3.495 16 O -0.585 6.585 17 C 0.050 3.950 18 H 0.125 0.875 19 C 0.040 3.960 20 O -0.380 6.380 21 C 0.012 3.988 22 C 0.026 3.974 23 N -0.683 5.683 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.029 0.971 32 H -0.013 1.013 33 H 0.266 0.734 34 H 0.117 0.883 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 19.065 3.196 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.033 4.033 4 C -0.023 4.023 5 N -0.320 5.320 6 C 0.151 3.849 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.292 3.708 16 O -0.465 6.465 17 C -0.063 4.063 18 H 0.143 0.857 19 C -0.039 4.039 20 O -0.299 6.299 21 C -0.065 4.065 22 C -0.103 4.103 23 N -0.314 5.314 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.047 0.953 32 H 0.005 0.995 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.715 18.441 2.767 19.504 hybrid contribution 1.405 -0.737 -0.116 1.591 sum -4.310 17.704 2.651 18.413 Atomic orbital electron populations 1.22858 0.80010 1.03107 1.00816 1.88040 1.21185 1.28806 1.95517 1.23184 0.93408 0.84938 1.01771 1.21991 0.93397 1.00109 0.86791 1.48098 1.64074 1.07982 1.11849 1.18661 0.95684 0.75460 0.95104 1.21746 0.98174 0.92652 1.45463 0.92597 1.25876 1.01845 0.96429 0.95137 1.70084 1.36639 1.01408 1.48760 0.85415 0.79024 0.77565 0.78774 1.18845 1.20802 1.19584 1.20843 0.77184 0.89585 0.83149 1.90626 1.48519 1.75940 1.31383 1.22091 1.01271 0.89894 0.93080 0.85706 1.23075 0.95583 0.82118 1.03097 1.88064 1.94454 1.18109 1.29232 1.23573 0.98104 1.00546 0.84312 1.22845 0.98696 0.85404 1.03366 1.60630 1.50977 1.10153 1.09686 0.93923 0.90046 0.91789 0.88775 0.93197 0.89785 0.86337 0.95293 0.99461 0.92556 0.86545 0.93620 0.93001 0.85202 0.87096 0.88984 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.42 -14.42 9.53 -148.98 -1.42 -15.84 16 3 C 0.04 1.20 6.09 71.98 0.44 1.64 16 4 C 0.10 3.13 5.42 86.38 0.47 3.60 16 5 N -0.59 -25.61 2.42 -826.16 -2.00 -27.61 16 6 C 0.27 15.31 4.98 85.63 0.43 15.74 16 7 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 9 C 0.01 0.34 5.46 84.65 0.46 0.81 16 10 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 11 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 15 C 0.50 21.47 6.93 87.65 0.61 22.07 16 16 O -0.58 -30.95 15.71 -3.01 -0.05 -31.00 16 17 C 0.05 1.50 2.19 44.18 0.10 1.59 16 18 H 0.13 3.19 6.19 -2.39 -0.01 3.17 16 19 C 0.04 1.07 6.04 72.01 0.43 1.51 16 20 O -0.38 -8.80 10.83 -148.98 -1.61 -10.42 16 21 C 0.01 0.22 7.01 72.02 0.50 0.72 16 22 C 0.03 0.47 6.76 86.32 0.58 1.05 16 23 N -0.68 -19.08 6.40 -494.59 -3.16 -22.25 16 24 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.05 1.30 7.28 -2.39 -0.02 1.29 16 29 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 30 H 0.12 2.78 4.75 -2.39 -0.01 2.77 16 31 H 0.03 1.71 7.11 -2.39 -0.02 1.70 16 32 H -0.01 -0.84 7.43 -2.38 -0.02 -0.86 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.12 2.84 6.32 -2.39 -0.02 2.83 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.54 8.14 -2.38 -0.02 1.53 16 39 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.35 10.62 8.24 -89.69 -0.74 9.88 16 Total: -1.00 -78.94 325.07 -0.12 -79.06 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.30 Total: 19.00 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 5.51 Total: 19.03 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.88 Total: -107.58 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -3.08 Total: -57.26 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.94 -0.12 -79.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088372437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.715 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds