Wall clock time and date at job start Mon Mar 30 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00386 * 2 1 4 4 H 1.48496 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47173 * 300.00393 * 3 2 1 6 6 H 1.48507 * 109.46900 * 60.00122 * 3 2 1 7 7 C 1.37883 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99734 * 175.48881 * 7 2 1 9 9 C 1.50696 * 120.00342 * 355.47935 * 7 2 1 10 10 H 1.09002 * 109.46942 * 24.93098 * 9 7 2 11 11 C 1.50700 * 109.47421 * 264.93048 * 9 7 2 12 12 C 1.38231 * 119.99777 * 285.21620 * 11 9 7 13 13 C 1.38241 * 119.99664 * 179.74373 * 12 11 9 14 14 C 1.38230 * 119.99882 * 0.55446 * 13 12 11 15 15 C 1.38243 * 120.00212 * 359.69983 * 14 13 12 16 16 C 1.38232 * 119.99701 * 0.02562 * 15 14 13 17 17 N 1.46901 * 109.46897 * 144.92665 * 9 7 2 18 18 C 1.48515 * 110.99646 * 184.92380 * 17 9 7 19 19 C 1.54287 * 104.71326 * 159.28040 * 18 17 9 20 20 H 1.09007 * 112.37988 * 98.55517 * 19 18 17 21 21 C 1.54289 * 108.81842 * 224.26905 * 19 18 17 22 22 N 1.48517 * 104.71451 * 135.73044 * 21 19 18 23 23 C 1.48519 * 104.20335 * 320.26747 * 22 21 19 24 24 C 1.54294 * 104.71428 * 39.73128 * 23 22 21 25 25 H 1.09005 * 112.37813 * 98.55013 * 24 23 22 26 26 C 1.48517 * 111.00433 * 300.32168 * 17 9 7 27 27 H 0.96991 * 119.99565 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00376 * 0.02562 * 12 11 9 29 29 H 1.07997 * 119.99739 * 180.27725 * 13 12 11 30 30 H 1.08004 * 120.00390 * 179.72793 * 14 13 12 31 31 H 1.07995 * 120.00141 * 180.02562 * 15 14 13 32 32 H 1.07997 * 119.99962 * 179.97438 * 16 15 14 33 33 H 1.08996 * 110.39343 * 40.46927 * 18 17 9 34 34 H 1.09000 * 110.48768 * 278.13355 * 18 17 9 35 35 H 1.08994 * 110.38724 * 16.92139 * 21 19 18 36 36 H 1.09002 * 110.39017 * 254.53523 * 21 19 18 37 37 H 1.00899 * 111.00238 * 200.72905 * 22 21 19 38 38 H 1.09001 * 110.39174 * 158.53959 * 23 22 21 39 39 H 1.08998 * 110.38997 * 280.81178 * 23 22 21 40 40 H 1.09000 * 110.38883 * 81.91232 * 26 17 9 41 41 H 1.08998 * 110.38171 * 319.53188 * 26 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1956 -0.0741 9 6 1.2545 -2.4972 0.1017 10 1 0.2383 -2.3616 -0.2685 11 6 1.2097 -2.9394 1.5417 12 6 2.3396 -3.4668 2.1383 13 6 2.2999 -3.8675 3.4607 14 6 1.1271 -3.7514 4.1831 15 6 -0.0044 -3.2288 3.5850 16 6 0.0369 -2.8229 2.2643 17 7 1.9367 -3.5192 -0.7034 18 6 1.1620 -4.7862 -0.7223 19 6 1.6719 -5.5386 -1.9691 20 1 2.4192 -6.2928 -1.7220 21 6 0.4616 -6.1211 -2.7283 22 7 0.7308 -5.8174 -4.1570 23 6 1.3063 -4.4484 -4.1364 24 6 2.2313 -4.4307 -2.9016 25 1 3.2766 -4.5945 -3.1638 26 6 2.0067 -3.1135 -2.1303 27 1 -0.4849 0.8400 0.0004 28 1 3.2547 -3.5616 1.5726 29 1 3.1840 -4.2754 3.9281 30 1 1.0948 -4.0685 5.2151 31 1 -0.9205 -3.1377 4.1495 32 1 -0.8471 -2.4150 1.7968 33 1 0.0960 -4.5783 -0.8138 34 1 1.3589 -5.3672 0.1787 35 1 -0.4592 -5.6364 -2.4040 36 1 0.3994 -7.1984 -2.5744 37 1 -0.1199 -5.8438 -4.6988 38 1 1.8809 -4.2642 -5.0441 39 1 0.5155 -3.7056 -4.0312 40 1 2.8423 -2.4322 -2.2908 41 1 1.0709 -2.6476 -2.4389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090322547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:59 Heat of formation + Delta-G solvation = 37.871190 kcal Electronic energy + Delta-G solvation = -21464.402906 eV Core-core repulsion = 18536.601496 eV Total energy + Delta-G solvation = -2927.801410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.66308 -38.22409 -35.57089 -32.99020 -31.13265 -30.14555 -29.97676 -28.88205 -26.34621 -25.21190 -23.26445 -21.71535 -21.40593 -20.91955 -19.44197 -18.91463 -16.53287 -16.28112 -15.83599 -15.58992 -14.79693 -14.42282 -14.21275 -14.12165 -13.45142 -13.28428 -12.73709 -12.55038 -12.27257 -12.05837 -11.82020 -11.74630 -11.56071 -11.31589 -11.09360 -11.03723 -10.62593 -10.51572 -10.32631 -10.25643 -10.18676 -10.07313 -9.79317 -9.32705 -8.63588 -8.51903 -8.02674 -7.66733 -7.37348 -6.16970 -4.19910 2.30816 2.33884 3.22792 3.31425 3.36104 4.30895 4.41706 4.64784 4.83250 4.89097 5.18036 5.20681 5.39853 5.41625 5.67000 5.68048 5.73732 5.78471 5.81343 5.87624 5.91335 6.07964 6.12636 6.21438 6.28394 6.40042 6.45735 6.54233 6.60081 6.69631 6.78543 6.86170 6.89885 6.98531 7.24888 7.33614 7.35973 7.36744 7.65331 7.72006 7.78102 8.01241 8.11662 8.41235 8.92996 9.44494 10.89863 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.007928 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.837145 B = 3530.961733 C = 5017.210716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.496 4.496 8 H 0.065 0.935 9 C 0.223 3.777 10 H 0.043 0.957 11 C -0.023 4.023 12 C -0.103 4.103 13 C -0.135 4.135 14 C -0.153 4.153 15 C -0.131 4.131 16 C -0.117 4.117 17 N -0.504 5.504 18 C 0.036 3.964 19 C -0.090 4.090 20 H 0.086 0.914 21 C 0.039 3.961 22 N -0.669 5.669 23 C 0.038 3.962 24 C -0.095 4.095 25 H 0.086 0.914 26 C 0.063 3.937 27 H 0.263 0.737 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.331 0.669 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -8.823 -2.080 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.535 4.535 8 H 0.083 0.917 9 C 0.117 3.883 10 H 0.061 0.939 11 C -0.024 4.024 12 C -0.121 4.121 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.149 4.149 16 C -0.136 4.136 17 N -0.228 5.228 18 C -0.093 4.093 19 C -0.110 4.110 20 H 0.105 0.895 21 C -0.091 4.091 22 N -0.297 5.297 23 C -0.091 4.091 24 C -0.114 4.114 25 H 0.105 0.895 26 C -0.066 4.066 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.281 -9.131 -1.928 9.419 hybrid contribution -1.332 1.824 0.105 2.261 sum -0.051 -7.306 -1.823 7.531 Atomic orbital electron populations 1.69911 1.06001 1.26920 1.49646 1.24992 0.94893 0.99468 0.94349 0.86476 0.80356 0.83293 0.77609 1.19453 1.21002 1.20890 1.20958 0.93659 0.88793 1.50054 0.91703 1.18657 0.95334 0.88816 0.85488 0.93925 1.20462 0.91742 0.91660 0.98577 1.20976 0.98824 0.98499 0.93794 1.21009 0.97209 1.02031 0.95089 1.20811 0.93869 1.03460 0.98952 1.20951 0.97706 1.00823 0.95444 1.21074 0.98550 0.99880 0.94116 1.65451 1.46607 1.03041 1.07703 1.23166 0.95739 0.93491 0.96862 1.22613 0.96321 0.97097 0.94929 0.89544 1.23071 0.96965 1.00577 0.88452 1.63737 1.30874 1.25304 1.09755 1.23095 0.97555 0.89569 0.98913 1.22709 0.99161 0.95825 0.93754 0.89537 1.22848 1.01057 0.94231 0.88431 0.92757 0.86222 0.87633 0.87813 0.87669 0.86663 0.94831 0.91211 0.94009 0.90663 0.85500 0.90596 0.93794 0.90384 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 12.77 55.43 0.71 -23.63 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.50 -12.92 7.48 -34.44 -0.26 -13.18 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.22 5.29 1.59 -70.02 -0.11 5.18 16 10 H 0.04 1.14 6.88 -51.93 -0.36 0.79 16 11 C -0.02 -0.52 4.11 -104.62 -0.43 -0.95 16 12 C -0.10 -2.13 9.26 -39.58 -0.37 -2.49 16 13 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 14 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 15 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 16 C -0.12 -2.55 9.67 -39.58 -0.38 -2.94 16 17 N -0.50 -10.35 4.64 -225.00 -1.04 -11.39 16 18 C 0.04 0.65 5.37 -2.26 -0.01 0.64 16 19 C -0.09 -1.38 4.12 -88.08 -0.36 -1.74 16 20 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 21 C 0.04 0.53 7.01 -2.25 -0.02 0.51 16 22 N -0.67 -8.82 7.62 -109.83 -0.84 -9.66 16 23 C 0.04 0.54 7.00 -2.25 -0.02 0.52 16 24 C -0.09 -1.49 4.12 -88.08 -0.36 -1.85 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 26 C 0.06 1.21 5.25 -2.26 -0.01 1.19 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.12 2.48 7.88 -52.49 -0.41 2.07 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 2.61 8.00 -52.49 -0.42 2.19 16 33 H 0.03 0.64 6.91 -51.93 -0.36 0.28 16 34 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.04 0.59 7.15 -51.93 -0.37 0.22 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.33 3.74 8.92 -39.29 -0.35 3.39 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.66 7.16 -51.93 -0.37 0.28 16 40 H 0.08 1.56 7.97 -51.93 -0.41 1.15 16 41 H 0.04 0.86 6.99 -51.93 -0.36 0.49 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -27.24 325.25 -11.26 -38.49 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.34 Total: 7.73 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -3.62 Total: -22.30 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -1.17 Total: -44.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.24 -11.26 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090322547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.366 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds