Wall clock time and date at job start Mon Mar 30 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00386 * 2 1 4 4 H 1.48496 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47173 * 300.00393 * 3 2 1 6 6 H 1.48507 * 109.46900 * 60.00122 * 3 2 1 7 7 C 1.37883 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99734 * 175.48881 * 7 2 1 9 9 C 1.50696 * 120.00342 * 355.47935 * 7 2 1 10 10 H 1.09002 * 109.46942 * 24.93098 * 9 7 2 11 11 C 1.50700 * 109.47421 * 264.93048 * 9 7 2 12 12 C 1.38231 * 119.99777 * 285.21620 * 11 9 7 13 13 C 1.38241 * 119.99664 * 179.74373 * 12 11 9 14 14 C 1.38230 * 119.99882 * 0.55446 * 13 12 11 15 15 C 1.38243 * 120.00212 * 359.69983 * 14 13 12 16 16 C 1.38232 * 119.99701 * 0.02562 * 15 14 13 17 17 N 1.46901 * 109.46897 * 144.92665 * 9 7 2 18 18 C 1.48515 * 110.99646 * 184.92380 * 17 9 7 19 19 C 1.54287 * 104.71326 * 159.28040 * 18 17 9 20 20 H 1.09007 * 112.37988 * 98.55517 * 19 18 17 21 21 C 1.54289 * 108.81842 * 224.26905 * 19 18 17 22 22 N 1.48517 * 104.71451 * 135.73044 * 21 19 18 23 23 C 1.48519 * 104.20335 * 320.26747 * 22 21 19 24 24 C 1.54294 * 104.71428 * 39.73128 * 23 22 21 25 25 H 1.09005 * 112.37813 * 98.55013 * 24 23 22 26 26 C 1.48517 * 111.00433 * 300.32168 * 17 9 7 27 27 H 0.96991 * 119.99565 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00376 * 0.02562 * 12 11 9 29 29 H 1.07997 * 119.99739 * 180.27725 * 13 12 11 30 30 H 1.08004 * 120.00390 * 179.72793 * 14 13 12 31 31 H 1.07995 * 120.00141 * 180.02562 * 15 14 13 32 32 H 1.07997 * 119.99962 * 179.97438 * 16 15 14 33 33 H 1.08996 * 110.39343 * 40.46927 * 18 17 9 34 34 H 1.09000 * 110.48768 * 278.13355 * 18 17 9 35 35 H 1.08994 * 110.38724 * 16.92139 * 21 19 18 36 36 H 1.09002 * 110.39017 * 254.53523 * 21 19 18 37 37 H 1.00899 * 111.00238 * 200.72905 * 22 21 19 38 38 H 1.09001 * 110.39174 * 158.53959 * 23 22 21 39 39 H 1.08998 * 110.38997 * 280.81178 * 23 22 21 40 40 H 1.09000 * 110.38883 * 81.91232 * 26 17 9 41 41 H 1.08998 * 110.38171 * 319.53188 * 26 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1956 -0.0741 9 6 1.2545 -2.4972 0.1017 10 1 0.2383 -2.3616 -0.2685 11 6 1.2097 -2.9394 1.5417 12 6 2.3396 -3.4668 2.1383 13 6 2.2999 -3.8675 3.4607 14 6 1.1271 -3.7514 4.1831 15 6 -0.0044 -3.2288 3.5850 16 6 0.0369 -2.8229 2.2643 17 7 1.9367 -3.5192 -0.7034 18 6 1.1620 -4.7862 -0.7223 19 6 1.6719 -5.5386 -1.9691 20 1 2.4192 -6.2928 -1.7220 21 6 0.4616 -6.1211 -2.7283 22 7 0.7308 -5.8174 -4.1570 23 6 1.3063 -4.4484 -4.1364 24 6 2.2313 -4.4307 -2.9016 25 1 3.2766 -4.5945 -3.1638 26 6 2.0067 -3.1135 -2.1303 27 1 -0.4849 0.8400 0.0004 28 1 3.2547 -3.5616 1.5726 29 1 3.1840 -4.2754 3.9281 30 1 1.0948 -4.0685 5.2151 31 1 -0.9205 -3.1377 4.1495 32 1 -0.8471 -2.4150 1.7968 33 1 0.0960 -4.5783 -0.8138 34 1 1.3589 -5.3672 0.1787 35 1 -0.4592 -5.6364 -2.4040 36 1 0.3994 -7.1984 -2.5744 37 1 -0.1199 -5.8438 -4.6988 38 1 1.8809 -4.2642 -5.0441 39 1 0.5155 -3.7056 -4.0312 40 1 2.8423 -2.4322 -2.2908 41 1 1.0709 -2.6476 -2.4389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090322547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:59 Heat of formation + Delta-G solvation = 20.714079 kcal Electronic energy + Delta-G solvation = -21465.146894 eV Core-core repulsion = 18536.601496 eV Total energy + Delta-G solvation = -2928.545398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08309 -39.73936 -37.06616 -34.81213 -32.78969 -31.53432 -31.48463 -30.32797 -28.15282 -26.60663 -25.01436 -23.26570 -22.72100 -22.36950 -21.12646 -20.25902 -18.43984 -17.64836 -17.34259 -16.99507 -16.52307 -15.92895 -15.76272 -15.60768 -15.03637 -14.80109 -14.30912 -14.05164 -13.80886 -13.60218 -13.35508 -13.16554 -12.96385 -12.92903 -12.86048 -12.69154 -12.34435 -11.92416 -11.82308 -11.75202 -11.66672 -11.58731 -11.52401 -11.12180 -10.66211 -9.66242 -9.58651 -9.30035 -9.08526 -8.19091 -6.28789 0.73322 0.78303 1.34929 1.37560 1.48743 2.35976 3.01306 3.22825 3.27507 3.37908 3.60949 3.89935 3.97138 4.15731 4.27010 4.31399 4.40275 4.42603 4.45262 4.48447 4.60589 4.73308 4.80510 4.82962 4.85073 4.90243 4.92401 4.99507 5.16303 5.22304 5.30148 5.33127 5.42828 5.45039 5.64362 5.67163 5.77546 5.79518 6.00011 6.08423 6.26523 6.36328 6.41911 6.61111 6.89651 7.38520 8.86537 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.007928 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.837145 B = 3530.961733 C = 5017.210716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.235 3.765 10 H -0.002 1.002 11 C -0.048 4.048 12 C -0.115 4.115 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.129 4.129 16 C -0.143 4.143 17 N -0.507 5.507 18 C 0.042 3.958 19 C -0.084 4.084 20 H 0.103 0.897 21 C 0.043 3.957 22 N -0.662 5.662 23 C 0.043 3.957 24 C -0.088 4.088 25 H 0.101 0.899 26 C 0.065 3.935 27 H 0.262 0.738 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.098 0.902 37 H 0.344 0.656 38 H 0.094 0.906 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -10.543 -1.100 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.128 3.872 10 H 0.016 0.984 11 C -0.049 4.049 12 C -0.134 4.134 13 C -0.145 4.145 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.162 4.162 17 N -0.231 5.231 18 C -0.087 4.087 19 C -0.103 4.103 20 H 0.121 0.879 21 C -0.087 4.087 22 N -0.291 5.291 23 C -0.087 4.087 24 C -0.108 4.108 25 H 0.119 0.881 26 C -0.064 4.064 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.116 0.884 37 H 0.160 0.840 38 H 0.112 0.888 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.525 -10.866 -0.960 11.197 hybrid contribution -1.730 2.293 -0.139 2.875 sum 0.795 -8.573 -1.099 8.680 Atomic orbital electron populations 1.70043 1.07191 1.27337 1.51044 1.25682 0.95590 1.02365 0.94404 0.85594 0.79327 0.79773 0.77565 1.18964 1.20454 1.20852 1.21126 0.93134 0.90256 1.49635 0.92802 1.18337 0.92671 0.89135 0.87086 0.98397 1.20368 0.93052 0.93660 0.97783 1.20988 0.97790 0.99318 0.95263 1.21395 0.98871 1.00445 0.93816 1.21275 0.92651 1.01423 1.00658 1.21257 0.99601 0.99737 0.94146 1.21035 0.97646 1.01635 0.95836 1.65392 1.46393 1.03268 1.08025 1.23130 0.94466 0.92520 0.98556 1.22624 0.97343 0.96950 0.93412 0.87865 1.23039 0.95520 1.01664 0.88433 1.63754 1.31706 1.24173 1.09469 1.23023 0.97022 0.89867 0.98799 1.22673 1.00458 0.93542 0.94103 0.88102 1.22798 0.98990 0.96096 0.88519 0.92926 0.86842 0.84054 0.83591 0.85038 0.89275 0.96673 0.91089 0.95138 0.88401 0.84005 0.88764 0.95390 0.91742 0.96964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.99 12.77 21.45 0.27 -52.71 16 2 C 0.02 1.08 5.46 84.66 0.46 1.54 16 3 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.50 -27.45 7.48 25.60 0.19 -27.26 16 8 H 0.05 2.99 7.82 -2.91 -0.02 2.96 16 9 C 0.23 11.81 1.59 43.42 0.07 11.87 16 10 H 0.00 -0.10 6.88 -2.39 -0.02 -0.12 16 11 C -0.05 -2.21 4.11 -19.87 -0.08 -2.29 16 12 C -0.12 -4.73 9.26 22.27 0.21 -4.52 16 13 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 14 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 15 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 16 C -0.14 -6.40 9.67 22.27 0.22 -6.19 16 17 N -0.51 -21.75 4.64 -865.78 -4.02 -25.77 16 18 C 0.04 1.54 5.37 86.43 0.46 2.01 16 19 C -0.08 -2.48 4.12 -9.15 -0.04 -2.52 16 20 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 21 C 0.04 1.11 7.01 86.43 0.61 1.71 16 22 N -0.66 -16.18 7.62 -501.38 -3.82 -20.00 16 23 C 0.04 1.16 7.00 86.43 0.61 1.77 16 24 C -0.09 -2.73 4.12 -9.15 -0.04 -2.76 16 25 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 26 C 0.06 2.60 5.25 86.42 0.45 3.05 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.11 4.71 7.88 -2.91 -0.02 4.69 16 29 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.09 4.36 8.00 -2.91 -0.02 4.33 16 33 H 0.01 0.61 6.91 -2.39 -0.02 0.59 16 34 H 0.07 2.57 8.05 -2.39 -0.02 2.55 16 35 H 0.03 0.86 7.15 -2.39 -0.02 0.84 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.34 7.11 8.92 -89.69 -0.80 6.31 16 38 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.03 0.85 7.16 -2.39 -0.02 0.84 16 40 H 0.06 2.71 7.97 -2.39 -0.02 2.69 16 41 H 0.01 0.55 6.99 -2.39 -0.02 0.53 16 Total: -1.00 -61.73 325.25 -1.54 -63.27 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.21 Total: 25.62 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.79 Total: -36.41 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -7.56 Total: -98.48 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -61.73 -1.54 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090322547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.980 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds