Wall clock time and date at job start Mon Mar 30 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48506 * 109.47177 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47107 * 239.99312 * 3 2 1 6 6 H 1.48503 * 109.47550 * 119.99435 * 3 2 1 7 7 C 1.37878 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00350 * 181.19774 * 7 2 1 9 9 C 1.50699 * 119.99931 * 1.19683 * 7 2 1 10 10 H 1.09001 * 109.46970 * 27.61703 * 9 7 2 11 11 C 1.50708 * 109.47411 * 267.62090 * 9 7 2 12 12 C 1.38239 * 119.99421 * 286.85237 * 11 9 7 13 13 C 1.38234 * 119.99488 * 179.76480 * 12 11 9 14 14 C 1.38240 * 119.99969 * 0.50503 * 13 12 11 15 15 C 1.38239 * 119.99883 * 359.74942 * 14 13 12 16 16 C 1.38228 * 120.00146 * 359.97438 * 15 14 13 17 17 N 1.46904 * 109.47323 * 147.61867 * 9 7 2 18 18 C 1.49773 * 110.99843 * 300.63903 * 17 9 7 19 19 C 1.49473 * 104.56581 * 245.11244 * 18 17 9 20 20 H 1.08998 * 107.90537 * 77.54794 * 19 18 17 21 21 C 1.49470 * 129.10363 * 211.49242 * 19 18 17 22 22 N 1.49771 * 104.56936 * 148.50732 * 21 19 18 23 23 C 1.50109 * 107.62085 * 353.23628 * 22 21 19 24 24 C 1.51378 * 102.37597 * 334.20124 * 23 22 21 25 25 H 1.09001 * 111.21209 * 287.67991 * 24 23 22 26 26 C 1.50110 * 110.99972 * 180.98811 * 17 9 7 27 27 H 0.96995 * 119.99770 * 179.16873 * 1 2 3 28 28 H 1.07996 * 120.00307 * 359.97438 * 12 11 9 29 29 H 1.07993 * 120.00107 * 180.23270 * 13 12 11 30 30 H 1.07999 * 120.00158 * 179.72776 * 14 13 12 31 31 H 1.08001 * 119.99749 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.00047 * 179.97438 * 16 15 14 33 33 H 1.08998 * 110.41739 * 3.88106 * 18 17 9 34 34 H 1.08998 * 110.41578 * 126.34047 * 18 17 9 35 35 H 1.09005 * 110.41647 * 29.73114 * 21 19 18 36 36 H 1.08999 * 110.41438 * 267.28147 * 21 19 18 37 37 H 1.00899 * 111.00231 * 231.59000 * 22 21 19 38 38 H 1.09001 * 110.82882 * 215.97746 * 23 22 21 39 39 H 1.09004 * 110.83009 * 92.41677 * 23 22 21 40 40 H 1.09001 * 110.82689 * 265.66735 * 26 17 9 41 41 H 1.08996 * 110.82757 * 29.02779 * 26 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1031 1.6963 -1.2124 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0201 9 6 1.2513 -2.4990 -0.0261 10 1 0.2898 -2.3535 -0.5186 11 6 1.0256 -2.9778 1.3849 12 6 2.0799 -3.4895 2.1181 13 6 1.8739 -3.9241 3.4140 14 6 0.6114 -3.8567 3.9732 15 6 -0.4439 -3.3498 3.2381 16 6 -0.2368 -2.9099 1.9442 17 7 2.0327 -3.5006 -0.7639 18 6 2.2905 -3.0514 -2.1693 19 6 1.5510 -4.0335 -3.0194 20 1 0.4930 -3.7729 -2.9893 21 6 1.8803 -4.5295 -4.3904 22 7 1.3577 -5.9328 -4.4190 23 6 0.8954 -6.2738 -3.0322 24 6 1.7400 -5.3565 -2.1739 25 1 2.7778 -5.6887 -2.1444 26 6 1.3016 -4.8098 -0.8321 27 1 -0.4849 -0.8399 -0.0122 28 1 3.0652 -3.5466 1.6795 29 1 2.6982 -4.3205 3.9881 30 1 0.4495 -4.2004 4.9842 31 1 -1.4303 -3.2975 3.6749 32 1 -1.0614 -2.5143 1.3698 33 1 1.9011 -2.0452 -2.3244 34 1 3.3575 -3.0854 -2.3896 35 1 2.9588 -4.5220 -4.5486 36 1 1.3802 -3.9221 -5.1448 37 1 2.0684 -6.5771 -4.7319 38 1 1.1012 -7.3190 -2.8011 39 1 -0.1646 -6.0505 -2.9110 40 1 1.6141 -5.4707 -0.0236 41 1 0.2233 -4.6532 -0.8075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090322549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:04 Heat of formation + Delta-G solvation = 56.769092 kcal Electronic energy + Delta-G solvation = -21512.926295 eV Core-core repulsion = 18585.944360 eV Total energy + Delta-G solvation = -2926.981935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20674 -38.41652 -35.83999 -33.30896 -31.01329 -30.09324 -30.07849 -28.71851 -26.23598 -25.59870 -23.42592 -22.01015 -21.49735 -20.22928 -19.98616 -19.54746 -16.90739 -16.28604 -15.96371 -15.42447 -14.96880 -14.52334 -14.12012 -13.81738 -13.70931 -13.30247 -12.97294 -12.61883 -12.50463 -12.29673 -12.23919 -11.88390 -11.76764 -11.41468 -11.09485 -10.85773 -10.79637 -10.69054 -10.40260 -10.23408 -10.12699 -10.03023 -9.79556 -8.94125 -8.57517 -8.55802 -8.13194 -7.71160 -7.43912 -6.47835 -4.20100 2.19476 2.23889 3.38495 3.40238 3.58440 4.13393 4.25657 4.41008 4.53562 4.81426 4.85642 5.25528 5.33057 5.50328 5.58683 5.59107 5.62433 5.65406 5.73185 5.83915 5.86730 5.95311 5.96447 6.09769 6.23096 6.28706 6.34600 6.37809 6.47679 6.59887 6.63871 6.68619 6.76203 6.84031 6.95780 7.19919 7.23004 7.31511 7.52038 7.58591 7.87272 7.91247 8.14203 8.46111 8.72743 9.49881 10.87785 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.007842 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.811815 B = 3569.643318 C = 5091.072242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.575 4.575 8 H 0.060 0.940 9 C 0.222 3.778 10 H 0.016 0.984 11 C -0.028 4.028 12 C -0.098 4.098 13 C -0.133 4.133 14 C -0.151 4.151 15 C -0.126 4.126 16 C -0.127 4.127 17 N -0.511 5.511 18 C 0.078 3.922 19 C -0.146 4.146 20 H 0.066 0.934 21 C 0.069 3.931 22 N -0.685 5.685 23 C 0.061 3.939 24 C -0.146 4.146 25 H 0.082 0.918 26 C 0.057 3.943 27 H 0.269 0.731 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.334 0.666 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -9.928 -2.256 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.613 4.613 8 H 0.078 0.922 9 C 0.115 3.885 10 H 0.034 0.966 11 C -0.029 4.029 12 C -0.116 4.116 13 C -0.151 4.151 14 C -0.169 4.169 15 C -0.144 4.144 16 C -0.146 4.146 17 N -0.235 5.235 18 C -0.050 4.050 19 C -0.166 4.166 20 H 0.084 0.916 21 C -0.060 4.060 22 N -0.312 5.312 23 C -0.068 4.068 24 C -0.166 4.166 25 H 0.100 0.900 26 C -0.071 4.071 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.174 -8.158 -2.254 8.738 hybrid contribution 0.199 -1.560 0.301 1.601 sum 2.374 -9.717 -1.952 10.192 Atomic orbital electron populations 1.70837 1.06887 1.30717 1.45266 1.25885 0.96437 1.02721 0.93201 0.83541 0.74953 0.75165 0.76738 1.20762 1.21251 1.21275 1.21748 0.94702 0.89702 1.55129 0.92159 1.18699 0.93047 0.90208 0.86499 0.96626 1.20484 0.91754 0.91927 0.98770 1.20908 0.99276 0.98209 0.93234 1.21030 0.96474 1.01721 0.95847 1.20829 0.93548 1.03346 0.99202 1.20927 0.98208 1.00383 0.94869 1.21007 0.97176 1.00791 0.95581 1.65327 1.44339 1.01897 1.11981 1.21627 0.99030 0.97606 0.86730 1.22410 1.02304 0.97038 0.94878 0.91576 1.21603 0.98474 0.89655 0.96274 1.63348 1.40815 1.03230 1.23857 1.22286 0.99523 0.97923 0.87067 1.23172 1.00648 0.96288 0.96512 0.89980 1.22331 0.96612 0.93129 0.95019 0.91890 0.86262 0.87465 0.87588 0.87457 0.87244 0.90402 0.91882 0.92936 0.90443 0.85152 0.91473 0.90422 0.91133 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.79 13.63 55.43 0.76 -25.04 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.07 24.45 29.90 -169.99 -5.08 19.36 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.57 -15.09 7.04 -34.44 -0.24 -15.33 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.22 5.25 1.23 -70.01 -0.09 5.16 16 10 H 0.02 0.42 6.17 -51.93 -0.32 0.10 16 11 C -0.03 -0.63 4.05 -104.62 -0.42 -1.06 16 12 C -0.10 -2.04 9.20 -39.58 -0.36 -2.41 16 13 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 14 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 15 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 16 C -0.13 -2.73 9.56 -39.59 -0.38 -3.11 16 17 N -0.51 -10.47 4.66 -227.22 -1.06 -11.53 16 18 C 0.08 1.50 6.23 -3.96 -0.02 1.47 16 19 C -0.15 -2.36 2.70 -91.27 -0.25 -2.61 16 20 H 0.07 1.21 7.97 -51.93 -0.41 0.79 16 21 C 0.07 0.93 7.46 -3.96 -0.03 0.90 16 22 N -0.68 -8.67 7.57 -111.81 -0.85 -9.51 16 23 C 0.06 0.79 7.33 -2.84 -0.02 0.77 16 24 C -0.15 -2.18 3.29 -89.43 -0.29 -2.48 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 26 C 0.06 1.02 5.58 -2.85 -0.02 1.00 16 27 H 0.27 7.64 5.86 -40.82 -0.24 7.40 16 28 H 0.12 2.51 7.93 -52.49 -0.42 2.09 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.11 2.41 7.43 -52.48 -0.39 2.02 16 33 H 0.08 1.71 6.92 -51.93 -0.36 1.35 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.33 3.52 8.94 -39.29 -0.35 3.17 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.77 7.85 -51.93 -0.41 0.36 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -28.13 324.40 -11.09 -39.22 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.33 Total: 8.40 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -3.42 Total: -25.79 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.15 Total: -46.08 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.13 -11.09 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090322549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.989 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds