Wall clock time and date at job start Mon Mar 30 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48506 * 109.47177 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47107 * 239.99312 * 3 2 1 6 6 H 1.48503 * 109.47550 * 119.99435 * 3 2 1 7 7 C 1.37878 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00350 * 181.19774 * 7 2 1 9 9 C 1.50699 * 119.99931 * 1.19683 * 7 2 1 10 10 H 1.09001 * 109.46970 * 27.61703 * 9 7 2 11 11 C 1.50708 * 109.47411 * 267.62090 * 9 7 2 12 12 C 1.38239 * 119.99421 * 286.85237 * 11 9 7 13 13 C 1.38234 * 119.99488 * 179.76480 * 12 11 9 14 14 C 1.38240 * 119.99969 * 0.50503 * 13 12 11 15 15 C 1.38239 * 119.99883 * 359.74942 * 14 13 12 16 16 C 1.38228 * 120.00146 * 359.97438 * 15 14 13 17 17 N 1.46904 * 109.47323 * 147.61867 * 9 7 2 18 18 C 1.49773 * 110.99843 * 300.63903 * 17 9 7 19 19 C 1.49473 * 104.56581 * 245.11244 * 18 17 9 20 20 H 1.08998 * 107.90537 * 77.54794 * 19 18 17 21 21 C 1.49470 * 129.10363 * 211.49242 * 19 18 17 22 22 N 1.49771 * 104.56936 * 148.50732 * 21 19 18 23 23 C 1.50109 * 107.62085 * 353.23628 * 22 21 19 24 24 C 1.51378 * 102.37597 * 334.20124 * 23 22 21 25 25 H 1.09001 * 111.21209 * 287.67991 * 24 23 22 26 26 C 1.50110 * 110.99972 * 180.98811 * 17 9 7 27 27 H 0.96995 * 119.99770 * 179.16873 * 1 2 3 28 28 H 1.07996 * 120.00307 * 359.97438 * 12 11 9 29 29 H 1.07993 * 120.00107 * 180.23270 * 13 12 11 30 30 H 1.07999 * 120.00158 * 179.72776 * 14 13 12 31 31 H 1.08001 * 119.99749 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.00047 * 179.97438 * 16 15 14 33 33 H 1.08998 * 110.41739 * 3.88106 * 18 17 9 34 34 H 1.08998 * 110.41578 * 126.34047 * 18 17 9 35 35 H 1.09005 * 110.41647 * 29.73114 * 21 19 18 36 36 H 1.08999 * 110.41438 * 267.28147 * 21 19 18 37 37 H 1.00899 * 111.00231 * 231.59000 * 22 21 19 38 38 H 1.09001 * 110.82882 * 215.97746 * 23 22 21 39 39 H 1.09004 * 110.83009 * 92.41677 * 23 22 21 40 40 H 1.09001 * 110.82689 * 265.66735 * 26 17 9 41 41 H 1.08996 * 110.82757 * 29.02779 * 26 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1031 1.6963 -1.2124 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0201 9 6 1.2513 -2.4990 -0.0261 10 1 0.2898 -2.3535 -0.5186 11 6 1.0256 -2.9778 1.3849 12 6 2.0799 -3.4895 2.1181 13 6 1.8739 -3.9241 3.4140 14 6 0.6114 -3.8567 3.9732 15 6 -0.4439 -3.3498 3.2381 16 6 -0.2368 -2.9099 1.9442 17 7 2.0327 -3.5006 -0.7639 18 6 2.2905 -3.0514 -2.1693 19 6 1.5510 -4.0335 -3.0194 20 1 0.4930 -3.7729 -2.9893 21 6 1.8803 -4.5295 -4.3904 22 7 1.3577 -5.9328 -4.4190 23 6 0.8954 -6.2738 -3.0322 24 6 1.7400 -5.3565 -2.1739 25 1 2.7778 -5.6887 -2.1444 26 6 1.3016 -4.8098 -0.8321 27 1 -0.4849 -0.8399 -0.0122 28 1 3.0652 -3.5466 1.6795 29 1 2.6982 -4.3205 3.9881 30 1 0.4495 -4.2004 4.9842 31 1 -1.4303 -3.2975 3.6749 32 1 -1.0614 -2.5143 1.3698 33 1 1.9011 -2.0452 -2.3244 34 1 3.3575 -3.0854 -2.3896 35 1 2.9588 -4.5220 -4.5486 36 1 1.3802 -3.9221 -5.1448 37 1 2.0684 -6.5771 -4.7319 38 1 1.1012 -7.3190 -2.8011 39 1 -0.1646 -6.0505 -2.9110 40 1 1.6141 -5.4707 -0.0236 41 1 0.2233 -4.6532 -0.8075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090322549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:04 Heat of formation + Delta-G solvation = 38.598542 kcal Electronic energy + Delta-G solvation = -21513.714229 eV Core-core repulsion = 18585.944360 eV Total energy + Delta-G solvation = -2927.769870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60581 -39.95541 -37.33983 -35.11207 -32.68889 -31.64756 -31.41429 -30.17595 -27.80120 -27.15632 -25.21746 -23.50274 -23.00431 -21.67853 -21.46311 -21.00215 -18.77318 -17.80034 -17.26857 -16.81798 -16.52158 -16.08076 -15.68462 -15.41089 -15.27318 -14.97890 -14.43724 -14.11949 -14.02191 -13.76908 -13.65545 -13.31153 -13.17091 -13.00352 -12.74903 -12.58736 -12.38017 -12.16289 -11.98628 -11.79430 -11.75071 -11.60290 -11.17310 -10.85025 -10.60930 -9.69504 -9.64760 -9.36452 -9.15681 -8.60714 -6.34620 0.62124 0.68109 1.49821 1.57036 1.75687 2.51431 2.88662 2.93612 3.10453 3.22121 3.25078 3.58626 4.03115 4.11884 4.21109 4.25552 4.30794 4.33859 4.36538 4.39767 4.50075 4.58421 4.66874 4.70735 4.72600 4.81877 4.88476 4.93725 4.97259 5.06968 5.15591 5.23158 5.29493 5.31454 5.51653 5.62334 5.69580 5.82243 5.91019 6.01353 6.23245 6.29868 6.42659 6.45373 6.63713 7.43288 8.72978 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.007842 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.811815 B = 3569.643318 C = 5091.072242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.025 4.025 3 Si 1.109 2.891 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.576 4.576 8 H 0.049 0.951 9 C 0.233 3.767 10 H -0.026 1.026 11 C -0.052 4.052 12 C -0.112 4.112 13 C -0.125 4.125 14 C -0.140 4.140 15 C -0.125 4.125 16 C -0.152 4.152 17 N -0.516 5.516 18 C 0.079 3.921 19 C -0.140 4.140 20 H 0.034 0.966 21 C 0.075 3.925 22 N -0.683 5.683 23 C 0.068 3.932 24 C -0.129 4.129 25 H 0.095 0.905 26 C 0.062 3.938 27 H 0.257 0.743 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.134 0.866 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.352 0.648 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 -11.982 -1.258 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.932 3.068 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.614 4.614 8 H 0.068 0.932 9 C 0.126 3.874 10 H -0.008 1.008 11 C -0.054 4.054 12 C -0.131 4.131 13 C -0.142 4.142 14 C -0.158 4.158 15 C -0.143 4.143 16 C -0.171 4.171 17 N -0.240 5.240 18 C -0.049 4.049 19 C -0.161 4.161 20 H 0.053 0.947 21 C -0.054 4.054 22 N -0.313 5.313 23 C -0.062 4.062 24 C -0.150 4.150 25 H 0.113 0.887 26 C -0.066 4.066 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.168 0.832 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.772 -10.248 -1.270 10.993 hybrid contribution -0.297 -1.019 0.047 1.062 sum 3.474 -11.267 -1.224 11.854 Atomic orbital electron populations 1.70926 1.07800 1.30031 1.48081 1.27137 0.96518 1.06049 0.92761 0.83024 0.74225 0.71711 0.77882 1.21176 1.19350 1.19962 1.21926 0.94156 0.91182 1.54140 0.93235 1.18410 0.90882 0.90383 0.87751 1.00820 1.20377 0.92962 0.93993 0.98027 1.20931 0.98296 0.99182 0.94658 1.21425 0.98082 1.00071 0.94669 1.21311 0.92482 1.01271 1.00691 1.21260 1.00235 0.99287 0.93558 1.21021 0.96438 1.02416 0.97191 1.65284 1.43916 1.02284 1.12531 1.21536 0.99804 0.96410 0.87129 1.22263 0.99760 0.96975 0.97080 0.94716 1.21560 0.99777 0.90072 0.93969 1.63271 1.41641 1.02967 1.23389 1.22265 0.98354 0.99032 0.86513 1.23118 1.01664 0.95912 0.94281 0.88673 1.22278 0.95177 0.91976 0.97208 0.93198 0.86985 0.83801 0.83263 0.84791 0.89535 0.94330 0.90584 0.90870 0.90521 0.83157 0.88407 0.91786 0.90469 0.96167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.63 21.45 0.29 -56.14 16 2 C -0.03 -1.43 5.46 84.65 0.46 -0.96 16 3 Si 1.11 50.49 29.90 68.60 2.05 52.54 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.58 -31.77 7.04 25.60 0.18 -31.59 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.23 11.75 1.23 43.42 0.05 11.80 16 10 H -0.03 -1.48 6.17 -2.39 -0.01 -1.50 16 11 C -0.05 -2.45 4.05 -19.86 -0.08 -2.53 16 12 C -0.11 -4.64 9.20 22.27 0.20 -4.44 16 13 C -0.12 -4.19 10.05 22.27 0.22 -3.97 16 14 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 15 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 16 C -0.15 -6.80 9.56 22.27 0.21 -6.59 16 17 N -0.52 -22.08 4.66 -872.78 -4.07 -26.14 16 18 C 0.08 3.17 6.23 84.61 0.53 3.70 16 19 C -0.14 -4.64 2.70 -11.21 -0.03 -4.67 16 20 H 0.03 1.35 7.97 -2.39 -0.02 1.33 16 21 C 0.08 1.93 7.46 84.61 0.63 2.57 16 22 N -0.68 -15.65 7.57 -507.65 -3.84 -19.49 16 23 C 0.07 1.62 7.33 85.14 0.62 2.25 16 24 C -0.13 -3.75 3.29 -10.02 -0.03 -3.78 16 25 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 26 C 0.06 2.24 5.58 85.14 0.48 2.72 16 27 H 0.26 15.83 5.86 -92.71 -0.54 15.28 16 28 H 0.11 4.71 7.93 -2.91 -0.02 4.68 16 29 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 30 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.09 4.16 7.43 -2.91 -0.02 4.14 16 33 H 0.04 1.83 6.92 -2.39 -0.02 1.81 16 34 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.35 6.15 8.94 -89.69 -0.80 5.35 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.02 0.81 7.85 -2.39 -0.02 0.79 16 Total: -1.00 -65.15 324.40 -1.23 -66.38 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.43 Total: 26.87 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.90 Total: -44.02 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -7.62 Total: -101.77 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.54 kcal Total: -65.15 -1.23 -66.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090322549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.979 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds