Wall clock time and date at job start Mon Mar 30 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 113.99598 * 2 1 4 4 C 1.53009 * 109.46524 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46939 * 65.00577 * 4 3 2 6 6 C 1.46500 * 120.00173 * 264.24988 * 5 4 3 7 7 C 1.50699 * 109.47061 * 264.77720 * 6 5 4 8 8 H 1.07998 * 120.00134 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00051 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99729 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00088 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46823 * 59.99782 * 11 9 7 13 13 H 1.48500 * 109.47118 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47111 * 300.00007 * 11 9 7 15 15 C 1.34778 * 120.00320 * 84.25020 * 5 4 3 16 16 O 1.21280 * 120.00010 * 3.22775 * 15 5 4 17 17 C 1.50706 * 120.00008 * 183.23320 * 15 5 4 18 18 H 1.08999 * 110.80031 * 305.17460 * 17 15 5 19 19 C 1.54990 * 110.90777 * 68.80838 * 17 15 5 20 20 O 1.44389 * 103.48773 * 155.25712 * 19 17 15 21 21 C 1.43746 * 106.97415 * 319.93584 * 20 19 17 22 22 C 1.54100 * 107.29338 * 26.51670 * 21 20 19 23 23 H 1.09004 * 110.48981 * 116.64336 * 22 21 20 24 24 N 1.46894 * 110.48605 * 239.29210 * 22 21 20 25 25 H 1.09002 * 109.46523 * 59.99667 * 1 2 3 26 26 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47068 * 299.99855 * 1 2 3 28 28 H 1.08995 * 109.47300 * 60.00542 * 3 2 1 29 29 H 1.08997 * 109.47576 * 300.00040 * 3 2 1 30 30 H 1.08991 * 109.47259 * 305.00211 * 4 3 2 31 31 H 1.09006 * 109.46624 * 184.99881 * 4 3 2 32 32 H 1.09000 * 109.46878 * 24.76996 * 6 5 4 33 33 H 1.08995 * 109.47527 * 144.77042 * 6 5 4 34 34 H 0.97003 * 119.99646 * 180.02562 * 10 9 7 35 35 H 1.09002 * 110.61928 * 36.75710 * 19 17 15 36 36 H 1.09000 * 110.62082 * 273.75769 * 19 17 15 37 37 H 1.08997 * 109.87285 * 145.93936 * 21 20 19 38 38 H 1.08997 * 109.87859 * 267.09278 * 21 20 19 39 39 H 1.00900 * 110.99971 * 298.54190 * 24 22 21 40 40 H 1.00893 * 111.00439 * 62.50095 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2276 -0.8783 -1.3047 7 6 5.6946 -1.1417 -1.0821 8 1 6.3723 -0.3171 -0.9175 9 6 6.1715 -2.4354 -1.0887 10 7 5.3461 -3.4395 -1.2887 11 14 7.9901 -2.7618 -0.8135 12 1 8.3911 -2.2382 0.5171 13 1 8.2442 -4.2239 -0.8667 14 1 8.7805 -2.0826 -1.8714 15 6 4.1518 1.3200 -2.3529 16 8 4.0010 2.5219 -2.2940 17 6 4.5349 0.6717 -3.6583 18 1 5.4369 0.0709 -3.5421 19 6 3.3682 -0.1837 -4.2144 20 8 3.6247 -0.2203 -5.6349 21 6 4.0728 1.0917 -6.0143 22 6 4.7176 1.7332 -4.7704 23 1 5.7765 1.9243 -4.9451 24 7 4.0215 2.9765 -4.4138 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1766 0.0902 32 1 3.6471 -1.3772 -0.5287 33 1 3.9336 -1.2621 -2.2816 34 1 5.6816 -4.3496 -1.2929 35 1 2.4102 0.2942 -4.0096 36 1 3.3946 -1.1888 -3.7936 37 1 4.8083 1.0149 -6.8151 38 1 3.2248 1.6922 -6.3435 39 1 4.0837 3.6526 -5.1602 40 1 3.0595 2.7951 -4.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090384931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:23 Heat of formation + Delta-G solvation = -98.083559 kcal Electronic energy + Delta-G solvation = -22815.534668 eV Core-core repulsion = 19438.695803 eV Total energy + Delta-G solvation = -3376.838865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09075 -38.24379 -37.21071 -34.98298 -33.58384 -32.55131 -30.91868 -29.02828 -27.43156 -26.93019 -25.89916 -23.54118 -22.75672 -22.35422 -20.67891 -18.14313 -17.17142 -16.60446 -16.25406 -15.89767 -15.65241 -15.12575 -14.96143 -14.77973 -14.65080 -14.37083 -13.98330 -13.63113 -13.37938 -12.66321 -12.38851 -12.11624 -12.03280 -11.83801 -11.58958 -11.49656 -11.23399 -10.99477 -10.90338 -10.75232 -10.53179 -10.40120 -10.07909 -9.67384 -9.48877 -9.39180 -8.91343 -8.47911 -7.84623 -7.57732 -6.10993 -4.18140 3.28144 3.33213 3.35081 3.48843 3.87254 4.14113 4.26501 4.41205 4.74714 4.92749 5.13965 5.21486 5.26289 5.34376 5.38601 5.48715 5.50568 5.62254 5.65301 5.74268 5.75626 5.82474 5.87324 6.02681 6.18098 6.23262 6.38611 6.50415 6.90725 7.02214 7.36384 7.47408 7.48243 7.67285 7.81732 7.86544 8.15919 8.45434 8.88146 9.18394 9.49195 10.95139 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.008745 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.331242 B = 3200.954419 C = 4537.809452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.048 3.952 4 C 0.125 3.875 5 N -0.593 5.593 6 C 0.236 3.764 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.522 3.478 16 O -0.529 6.529 17 C -0.134 4.134 18 H 0.125 0.875 19 C 0.058 3.942 20 O -0.374 6.374 21 C 0.010 3.990 22 C 0.074 3.926 23 H 0.094 0.906 24 N -0.794 5.794 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.319 0.681 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 7.878 -3.240 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.030 4.030 4 C 0.001 3.999 5 N -0.324 5.324 6 C 0.116 3.884 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.309 3.691 16 O -0.406 6.406 17 C -0.156 4.156 18 H 0.143 0.857 19 C -0.019 4.019 20 O -0.293 6.293 21 C -0.070 4.070 22 C -0.040 4.040 23 H 0.112 0.888 24 N -0.325 5.325 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.306 7.998 -2.740 10.547 hybrid contribution 0.261 -0.298 -0.504 0.642 sum -6.045 7.700 -3.244 10.312 Atomic orbital electron populations 1.22676 0.82226 1.02343 0.99154 1.88045 1.18586 1.27652 1.95207 1.23038 0.95519 0.84730 0.99681 1.21269 0.90742 0.99537 0.88376 1.48192 1.64725 1.11137 1.08362 1.19567 0.96150 0.73745 0.98934 1.21519 0.93564 0.92430 1.50372 0.92348 1.24925 0.97899 0.95991 0.94901 1.69917 1.34717 0.99211 1.48838 0.86620 0.85209 0.77101 0.78894 1.20230 1.21193 1.20166 1.19926 0.77501 0.86781 0.84934 1.90683 1.51600 1.13547 1.84760 1.22875 1.02295 0.97076 0.93316 0.85703 1.23714 0.95617 1.02335 0.80202 1.88893 1.86953 1.29689 1.23719 1.24259 0.98133 0.85597 0.98969 1.22705 0.99685 0.90173 0.91428 0.88758 1.59149 1.20758 1.09666 1.42965 0.94717 0.89908 0.94724 0.93401 0.93370 0.89693 0.89744 0.93783 0.94385 0.92541 0.92887 0.86565 0.89983 0.93099 0.86832 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.54 10.36 -35.23 -0.37 -6.90 16 3 C 0.05 0.77 6.24 37.16 0.23 1.00 16 4 C 0.12 2.28 5.74 -4.04 -0.02 2.25 16 5 N -0.59 -12.28 2.43 -175.06 -0.43 -12.71 16 6 C 0.24 5.60 4.79 -5.19 -0.02 5.57 16 7 C -0.54 -14.09 8.80 -34.44 -0.30 -14.39 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 11 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.52 10.52 6.72 -10.98 -0.07 10.45 16 16 O -0.53 -11.02 12.77 5.56 0.07 -10.95 16 17 C -0.13 -2.49 2.52 -89.76 -0.23 -2.72 16 18 H 0.13 2.59 7.45 -51.93 -0.39 2.20 16 19 C 0.06 1.03 6.50 38.21 0.25 1.28 16 20 O -0.37 -6.55 11.52 -35.23 -0.41 -6.96 16 21 C 0.01 0.14 7.49 37.73 0.28 0.43 16 22 C 0.07 1.15 4.06 -66.19 -0.27 0.88 16 23 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 24 N -0.79 -11.99 6.54 -3.37 -0.02 -12.01 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 31 H 0.08 1.49 7.56 -51.93 -0.39 1.10 16 32 H 0.04 1.14 7.79 -51.93 -0.40 0.74 16 33 H 0.04 0.92 4.35 -51.93 -0.23 0.70 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.12 2.27 5.98 -51.93 -0.31 1.96 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.65 7.93 -51.93 -0.41 0.23 16 39 H 0.32 3.91 9.06 -39.29 -0.36 3.56 16 40 H 0.34 5.29 7.90 -39.30 -0.31 4.98 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -29.55 324.32 -5.82 -35.37 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.14 Total: 9.47 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.86 Total: 7.95 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.29 Total: -48.65 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.70 Total: -24.81 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.55 -5.82 -35.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090384931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.713 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds