Wall clock time and date at job start Mon Mar 30 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 113.99598 * 2 1 4 4 C 1.53009 * 109.46524 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46939 * 65.00577 * 4 3 2 6 6 C 1.46500 * 120.00173 * 264.24988 * 5 4 3 7 7 C 1.50699 * 109.47061 * 264.77720 * 6 5 4 8 8 H 1.07998 * 120.00134 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00051 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99729 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00088 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46823 * 59.99782 * 11 9 7 13 13 H 1.48500 * 109.47118 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47111 * 300.00007 * 11 9 7 15 15 C 1.34778 * 120.00320 * 84.25020 * 5 4 3 16 16 O 1.21280 * 120.00010 * 3.22775 * 15 5 4 17 17 C 1.50706 * 120.00008 * 183.23320 * 15 5 4 18 18 H 1.08999 * 110.80031 * 305.17460 * 17 15 5 19 19 C 1.54990 * 110.90777 * 68.80838 * 17 15 5 20 20 O 1.44389 * 103.48773 * 155.25712 * 19 17 15 21 21 C 1.43746 * 106.97415 * 319.93584 * 20 19 17 22 22 C 1.54100 * 107.29338 * 26.51670 * 21 20 19 23 23 H 1.09004 * 110.48981 * 116.64336 * 22 21 20 24 24 N 1.46894 * 110.48605 * 239.29210 * 22 21 20 25 25 H 1.09002 * 109.46523 * 59.99667 * 1 2 3 26 26 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47068 * 299.99855 * 1 2 3 28 28 H 1.08995 * 109.47300 * 60.00542 * 3 2 1 29 29 H 1.08997 * 109.47576 * 300.00040 * 3 2 1 30 30 H 1.08991 * 109.47259 * 305.00211 * 4 3 2 31 31 H 1.09006 * 109.46624 * 184.99881 * 4 3 2 32 32 H 1.09000 * 109.46878 * 24.76996 * 6 5 4 33 33 H 1.08995 * 109.47527 * 144.77042 * 6 5 4 34 34 H 0.97003 * 119.99646 * 180.02562 * 10 9 7 35 35 H 1.09002 * 110.61928 * 36.75710 * 19 17 15 36 36 H 1.09000 * 110.62082 * 273.75769 * 19 17 15 37 37 H 1.08997 * 109.87285 * 145.93936 * 21 20 19 38 38 H 1.08997 * 109.87859 * 267.09278 * 21 20 19 39 39 H 1.00900 * 110.99971 * 298.54190 * 24 22 21 40 40 H 1.00893 * 111.00439 * 62.50095 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2276 -0.8783 -1.3047 7 6 5.6946 -1.1417 -1.0821 8 1 6.3723 -0.3171 -0.9175 9 6 6.1715 -2.4354 -1.0887 10 7 5.3461 -3.4395 -1.2887 11 14 7.9901 -2.7618 -0.8135 12 1 8.3911 -2.2382 0.5171 13 1 8.2442 -4.2239 -0.8667 14 1 8.7805 -2.0826 -1.8714 15 6 4.1518 1.3200 -2.3529 16 8 4.0010 2.5219 -2.2940 17 6 4.5349 0.6717 -3.6583 18 1 5.4369 0.0709 -3.5421 19 6 3.3682 -0.1837 -4.2144 20 8 3.6247 -0.2203 -5.6349 21 6 4.0728 1.0917 -6.0143 22 6 4.7176 1.7332 -4.7704 23 1 5.7765 1.9243 -4.9451 24 7 4.0215 2.9765 -4.4138 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1766 0.0902 32 1 3.6471 -1.3772 -0.5287 33 1 3.9336 -1.2621 -2.2816 34 1 5.6816 -4.3496 -1.2929 35 1 2.4102 0.2942 -4.0096 36 1 3.3946 -1.1888 -3.7936 37 1 4.8083 1.0149 -6.8151 38 1 3.2248 1.6922 -6.3435 39 1 4.0837 3.6526 -5.1602 40 1 3.0595 2.7951 -4.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090384931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:22 Heat of formation + Delta-G solvation = -120.158519 kcal Electronic energy + Delta-G solvation = -22816.491910 eV Core-core repulsion = 19438.695803 eV Total energy + Delta-G solvation = -3377.796107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55329 -39.66171 -38.53485 -36.63451 -34.98682 -34.44267 -32.36187 -30.50948 -28.80995 -28.56164 -27.09366 -25.18636 -24.40151 -23.76274 -22.02125 -19.70765 -18.71217 -18.43977 -17.65760 -17.33072 -16.98142 -16.55639 -16.45630 -16.23486 -16.07171 -15.76457 -15.45110 -15.00841 -14.73725 -14.38240 -13.83724 -13.70074 -13.51326 -13.29786 -13.00851 -12.91210 -12.78119 -12.70734 -12.47061 -12.23093 -12.09731 -11.90282 -11.82523 -11.61337 -10.81878 -10.63219 -10.57177 -10.36156 -9.29086 -9.10525 -8.15070 -6.29786 1.42891 1.43051 1.51035 1.88066 2.32387 2.45909 2.91290 2.97636 3.14064 3.43008 3.68535 3.86025 3.88518 4.08829 4.16953 4.20485 4.22920 4.35165 4.44987 4.54980 4.57798 4.62789 4.69370 4.75117 4.82533 4.86134 4.94309 5.06492 5.11905 5.37527 5.68768 5.75246 5.95868 6.14299 6.31443 6.32943 6.66547 6.74068 6.91803 7.39067 7.57761 8.89229 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.008745 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.331242 B = 3200.954419 C = 4537.809452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.057 3.943 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.255 3.745 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.022 3.978 10 N -0.918 5.918 11 Si 0.952 3.048 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.521 3.479 16 O -0.533 6.533 17 C -0.137 4.137 18 H 0.099 0.901 19 C 0.069 3.931 20 O -0.390 6.390 21 C 0.012 3.988 22 C 0.081 3.919 23 H 0.100 0.900 24 N -0.803 5.803 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.338 0.662 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 9.064 -3.781 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.020 4.020 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.134 3.866 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.179 4.179 10 N -0.557 5.557 11 Si 0.778 3.222 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.308 3.692 16 O -0.411 6.411 17 C -0.159 4.159 18 H 0.117 0.883 19 C -0.007 4.007 20 O -0.309 6.309 21 C -0.067 4.067 22 C -0.032 4.032 23 H 0.118 0.882 24 N -0.336 5.336 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.368 9.217 -3.287 11.675 hybrid contribution 0.238 -0.618 -0.333 0.742 sum -6.130 8.599 -3.620 11.163 Atomic orbital electron populations 1.22869 0.80024 1.03307 1.00628 1.87997 1.21114 1.28455 1.95489 1.22918 0.93594 0.84600 1.00884 1.21429 0.92805 0.99243 0.87006 1.48167 1.65108 1.10010 1.09612 1.19122 0.94505 0.75411 0.97523 1.21720 0.94564 0.92304 1.50044 0.93232 1.25630 1.01723 0.95835 0.94693 1.70016 1.36395 0.99509 1.49738 0.85697 0.80591 0.77080 0.78842 1.19861 1.20693 1.19675 1.20133 0.77155 0.86712 0.85159 1.90673 1.51904 1.13554 1.84954 1.22819 1.01321 0.98019 0.93775 0.88325 1.23462 0.95782 1.00846 0.80654 1.88870 1.87229 1.31784 1.23009 1.24419 0.99388 0.84199 0.98667 1.22627 1.00298 0.89711 0.90613 0.88238 1.59037 1.20578 1.09780 1.44187 0.93859 0.89331 0.92520 0.90370 0.93744 0.90691 0.89141 0.96389 0.94967 0.92456 0.91916 0.88993 0.87821 0.90954 0.84727 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -14.12 10.36 -148.98 -1.54 -15.66 16 3 C 0.06 1.78 6.24 71.99 0.45 2.23 16 4 C 0.12 4.32 5.74 86.38 0.50 4.81 16 5 N -0.60 -25.10 2.43 -826.16 -2.01 -27.11 16 6 C 0.26 12.50 4.79 85.63 0.41 12.91 16 7 C -0.55 -29.14 8.80 25.60 0.23 -28.91 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 9 C 0.02 1.16 5.46 84.66 0.46 1.62 16 10 N -0.92 -51.75 13.29 21.45 0.28 -51.47 16 11 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.52 20.95 6.72 87.66 0.59 21.54 16 16 O -0.53 -21.71 12.77 -3.03 -0.04 -21.75 16 17 C -0.14 -5.11 2.52 -10.24 -0.03 -5.13 16 18 H 0.10 4.19 7.45 -2.39 -0.02 4.18 16 19 C 0.07 2.48 6.50 72.66 0.47 2.96 16 20 O -0.39 -13.26 11.52 -148.98 -1.72 -14.98 16 21 C 0.01 0.32 7.49 72.35 0.54 0.86 16 22 C 0.08 2.39 4.06 45.91 0.19 2.58 16 23 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 24 N -0.80 -22.60 6.54 -164.58 -1.08 -23.68 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 31 H 0.09 3.15 7.56 -2.38 -0.02 3.13 16 32 H 0.02 0.97 7.79 -2.39 -0.02 0.95 16 33 H 0.03 1.63 4.35 -2.39 -0.01 1.62 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.06 2.10 8.04 -2.39 -0.02 2.09 16 36 H 0.09 3.74 5.98 -2.39 -0.01 3.72 16 37 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 1.60 7.93 -2.39 -0.02 1.58 16 39 H 0.34 7.38 9.06 -89.69 -0.81 6.56 16 40 H 0.34 9.87 7.90 -89.70 -0.71 9.16 16 Total: -1.00 -62.73 324.32 0.52 -62.21 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.47 Total: 30.25 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 5.06 Total: 17.40 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -2.80 Total: -102.25 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -3.30 Total: -52.39 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -62.73 0.52 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090384931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.952 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds