Wall clock time and date at job start Mon Mar 30 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99620 * 2 1 4 4 H 1.48501 * 109.47024 * 240.00038 * 3 2 1 5 5 H 1.48505 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47238 * 120.00048 * 3 2 1 7 7 C 1.38810 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99762 * 193.21984 * 7 2 1 9 9 N 1.36934 * 120.00180 * 13.22309 * 7 2 1 10 10 C 1.47081 * 120.88393 * 212.34759 * 9 7 2 11 11 C 1.53236 * 108.52131 * 231.16342 * 10 9 7 12 12 N 1.46904 * 109.33891 * 306.16798 * 11 10 9 13 13 C 1.46897 * 111.00045 * 187.25610 * 12 11 10 14 14 C 1.53003 * 109.47191 * 163.81164 * 13 12 11 15 15 H 1.09005 * 112.82583 * 67.66206 * 14 13 12 16 16 C 1.53514 * 113.58713 * 296.54920 * 14 13 12 17 17 C 1.51604 * 87.24600 * 245.32827 * 16 14 13 18 18 C 1.38378 * 147.52456 * 180.02562 * 17 16 14 19 19 C 1.38093 * 120.32589 * 180.02562 * 18 17 16 20 20 C 1.38249 * 119.95494 * 359.97438 * 19 18 17 21 21 C 1.38095 * 119.95579 * 359.97438 * 20 19 18 22 22 C 1.38373 * 120.32406 * 0.02867 * 21 20 19 23 23 C 1.46893 * 111.27079 * 63.10569 * 12 11 10 24 24 C 1.47080 * 120.88143 * 32.32130 * 9 7 2 25 25 H 0.96994 * 120.00458 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.63017 * 111.45033 * 10 9 7 27 27 H 1.09002 * 109.78646 * 350.96279 * 10 9 7 28 28 H 1.08997 * 109.49129 * 186.20791 * 11 10 9 29 29 H 1.08996 * 109.51910 * 66.14148 * 11 10 9 30 30 H 1.09005 * 109.47223 * 43.81400 * 13 12 11 31 31 H 1.09004 * 109.47061 * 283.81340 * 13 12 11 32 32 H 1.09002 * 113.59193 * 359.92529 * 16 14 13 33 33 H 1.09004 * 113.58317 * 130.65664 * 16 14 13 34 34 H 1.07997 * 119.83844 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.02343 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.02351 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.83799 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.49784 * 56.85306 * 23 12 11 39 39 H 1.09000 * 109.49488 * 176.93623 * 23 12 11 40 40 H 1.08998 * 109.63114 * 248.55314 * 24 9 7 41 41 H 1.08999 * 109.62821 * 8.93817 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0689 -1.2143 0.2144 9 7 1.3530 -2.3724 -0.2702 10 6 1.7681 -3.6348 0.3603 11 6 1.9490 -4.6900 -0.7361 12 7 0.7222 -4.7713 -1.5401 13 6 0.7895 -5.8884 -2.4917 14 6 -0.6145 -6.1978 -3.0151 15 1 -1.0177 -5.4012 -3.6406 16 6 -1.5852 -6.6741 -1.9254 17 6 -1.6226 -8.0082 -2.6446 18 6 -2.1229 -9.2977 -2.6875 19 6 -1.7523 -10.1559 -3.7038 20 6 -0.8776 -9.7272 -4.6848 21 6 -0.3762 -8.4410 -4.6474 22 6 -0.7443 -7.5770 -3.6312 23 6 0.4547 -3.5043 -2.2337 24 6 0.2127 -2.4004 -1.1987 25 1 -0.4850 0.8400 -0.0004 26 1 1.0013 -3.9632 1.0617 27 1 2.7105 -3.4908 0.8888 28 1 2.1490 -5.6590 -0.2788 29 1 2.7856 -4.4103 -1.3763 30 1 1.1926 -6.7686 -1.9908 31 1 1.4366 -5.6167 -3.3258 32 1 -1.1363 -6.7257 -0.9335 33 1 -2.5395 -6.1473 -1.9308 34 1 -2.8066 -9.6345 -1.9223 35 1 -2.1454 -11.1614 -3.7323 36 1 -0.5874 -10.3974 -5.4804 37 1 0.3066 -8.1079 -5.4150 38 1 1.3121 -3.2406 -2.8530 39 1 -0.4289 -3.6134 -2.8626 40 1 -0.7037 -2.6102 -0.6471 41 1 0.1255 -1.4368 -1.7006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090977015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:30 Heat of formation + Delta-G solvation = 91.976811 kcal Electronic energy + Delta-G solvation = -20587.958754 eV Core-core repulsion = 17662.503540 eV Total energy + Delta-G solvation = -2925.455214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50644 -38.01751 -35.73793 -33.93948 -31.33405 -30.80019 -29.91269 -28.36153 -26.64917 -25.22468 -23.29835 -22.58593 -22.03987 -21.11812 -19.54149 -19.02711 -16.83481 -16.58154 -15.59783 -15.18225 -14.90451 -14.57069 -14.48438 -14.17455 -13.50017 -13.40210 -13.19414 -13.01570 -12.85765 -12.74426 -12.11511 -12.03754 -11.48636 -11.27936 -11.21117 -11.02428 -10.73985 -10.73003 -10.44415 -10.32540 -10.17528 -10.03391 -9.76004 -9.57511 -8.87054 -8.60275 -8.48465 -7.78855 -6.55806 -5.76565 -3.23758 1.28325 1.35395 3.38915 3.44314 3.45364 3.71023 4.05447 4.38621 4.49560 4.53529 4.88469 4.94535 5.03341 5.15960 5.40648 5.45310 5.48570 5.54320 5.57339 5.74682 5.80159 5.82236 5.96063 5.99141 6.02097 6.13026 6.19886 6.26898 6.32408 6.35524 6.38499 6.42803 6.58142 6.72535 6.79955 6.97600 6.98899 7.25303 7.62869 7.67028 7.73861 7.83927 8.49276 9.24301 9.85822 10.47903 11.32064 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.046564 B = 0.003513 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.176739 B = 7967.583704 C = 8026.371040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.594 5.594 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.529 5.529 13 C 0.071 3.929 14 C -0.034 4.034 15 H 0.094 0.906 16 C -0.055 4.055 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.096 4.096 22 C -0.124 4.124 23 C 0.034 3.966 24 C 0.182 3.818 25 H 0.254 0.746 26 H 0.025 0.975 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.024 0.976 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -17.158 -7.630 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.079 0.921 9 N -0.318 5.318 10 C 0.023 3.977 11 C -0.084 4.084 12 N -0.254 5.254 13 C -0.058 4.058 14 C -0.053 4.053 15 H 0.112 0.888 16 C -0.091 4.091 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.095 4.095 24 C 0.056 3.944 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.956 -17.079 -7.290 18.804 hybrid contribution 1.077 0.865 -0.722 1.559 sum -1.879 -16.214 -8.012 18.183 Atomic orbital electron populations 1.69990 1.05240 1.25609 1.53714 1.25176 0.95341 0.98395 1.00338 0.86376 0.78892 0.83363 0.78110 1.21048 1.21592 1.20843 1.19094 0.91251 0.84256 1.44031 0.92051 1.44032 1.36211 1.03205 1.48315 1.20974 0.97921 0.86418 0.92405 1.22627 0.89805 0.99438 0.96575 1.61894 1.36222 1.03659 1.23594 1.21885 0.94027 0.95068 0.94810 1.21398 0.96557 0.92245 0.95086 0.88778 1.21793 0.99556 0.88737 0.99060 1.22546 0.97111 0.94844 0.98021 1.20328 1.00465 0.92338 0.98783 1.20953 0.98723 0.99320 0.94967 1.20937 0.98510 0.95609 0.99267 1.20342 1.00214 0.93027 0.97855 1.22391 0.97933 0.96974 0.95200 1.22928 0.98726 0.90435 0.97400 1.20774 0.89626 0.94898 0.89140 0.93558 0.95690 0.92718 0.92130 0.95537 0.91272 0.95001 0.88212 0.89363 0.86632 0.86017 0.86022 0.86728 0.95788 0.92120 0.95423 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.35 55.49 0.63 -25.63 16 2 C 0.01 0.19 4.99 -17.43 -0.09 0.10 16 3 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.26 -7.11 9.59 -15.06 -0.14 -7.26 16 8 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 9 N -0.59 -15.14 3.01 -172.02 -0.52 -15.66 16 10 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 11 C 0.04 0.81 5.60 -3.70 -0.02 0.79 16 12 N -0.53 -9.23 4.41 -234.32 -1.03 -10.26 16 13 C 0.07 1.02 4.73 -3.82 -0.02 1.01 16 14 C -0.03 -0.46 3.67 -91.07 -0.33 -0.79 16 15 H 0.09 1.26 7.14 -51.93 -0.37 0.89 16 16 C -0.05 -0.71 7.69 -27.19 -0.21 -0.92 16 17 C -0.13 -1.60 7.49 -103.88 -0.78 -2.38 16 18 C -0.10 -1.15 10.03 -39.58 -0.40 -1.54 16 19 C -0.12 -1.23 10.04 -39.63 -0.40 -1.63 16 20 C -0.13 -1.28 10.04 -39.63 -0.40 -1.68 16 21 C -0.10 -1.12 10.03 -39.58 -0.40 -1.51 16 22 C -0.12 -1.61 6.97 -103.88 -0.72 -2.33 16 23 C 0.03 0.66 5.46 -3.70 -0.02 0.64 16 24 C 0.18 4.36 5.36 -3.60 -0.02 4.34 16 25 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.13 7.96 -51.93 -0.41 0.72 16 28 H 0.06 0.95 7.93 -51.93 -0.41 0.53 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.98 7.81 -51.93 -0.41 0.57 16 31 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.10 1.36 8.00 -51.93 -0.42 0.94 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 2.12 6.44 -51.93 -0.33 1.79 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -29.81 327.21 -11.46 -41.27 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.47 Total: -1.36 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.97 Total: -9.98 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.92 Total: -51.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.81 -11.46 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090977015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.244 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds