Wall clock time and date at job start Mon Mar 30 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99620 * 2 1 4 4 H 1.48501 * 109.47024 * 240.00038 * 3 2 1 5 5 H 1.48505 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47238 * 120.00048 * 3 2 1 7 7 C 1.38810 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99762 * 193.21984 * 7 2 1 9 9 N 1.36934 * 120.00180 * 13.22309 * 7 2 1 10 10 C 1.47081 * 120.88393 * 212.34759 * 9 7 2 11 11 C 1.53236 * 108.52131 * 231.16342 * 10 9 7 12 12 N 1.46904 * 109.33891 * 306.16798 * 11 10 9 13 13 C 1.46897 * 111.00045 * 187.25610 * 12 11 10 14 14 C 1.53003 * 109.47191 * 163.81164 * 13 12 11 15 15 H 1.09005 * 112.82583 * 67.66206 * 14 13 12 16 16 C 1.53514 * 113.58713 * 296.54920 * 14 13 12 17 17 C 1.51604 * 87.24600 * 245.32827 * 16 14 13 18 18 C 1.38378 * 147.52456 * 180.02562 * 17 16 14 19 19 C 1.38093 * 120.32589 * 180.02562 * 18 17 16 20 20 C 1.38249 * 119.95494 * 359.97438 * 19 18 17 21 21 C 1.38095 * 119.95579 * 359.97438 * 20 19 18 22 22 C 1.38373 * 120.32406 * 0.02867 * 21 20 19 23 23 C 1.46893 * 111.27079 * 63.10569 * 12 11 10 24 24 C 1.47080 * 120.88143 * 32.32130 * 9 7 2 25 25 H 0.96994 * 120.00458 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.63017 * 111.45033 * 10 9 7 27 27 H 1.09002 * 109.78646 * 350.96279 * 10 9 7 28 28 H 1.08997 * 109.49129 * 186.20791 * 11 10 9 29 29 H 1.08996 * 109.51910 * 66.14148 * 11 10 9 30 30 H 1.09005 * 109.47223 * 43.81400 * 13 12 11 31 31 H 1.09004 * 109.47061 * 283.81340 * 13 12 11 32 32 H 1.09002 * 113.59193 * 359.92529 * 16 14 13 33 33 H 1.09004 * 113.58317 * 130.65664 * 16 14 13 34 34 H 1.07997 * 119.83844 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.02343 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.02351 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.83799 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.49784 * 56.85306 * 23 12 11 39 39 H 1.09000 * 109.49488 * 176.93623 * 23 12 11 40 40 H 1.08998 * 109.63114 * 248.55314 * 24 9 7 41 41 H 1.08999 * 109.62821 * 8.93817 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0689 -1.2143 0.2144 9 7 1.3530 -2.3724 -0.2702 10 6 1.7681 -3.6348 0.3603 11 6 1.9490 -4.6900 -0.7361 12 7 0.7222 -4.7713 -1.5401 13 6 0.7895 -5.8884 -2.4917 14 6 -0.6145 -6.1978 -3.0151 15 1 -1.0177 -5.4012 -3.6406 16 6 -1.5852 -6.6741 -1.9254 17 6 -1.6226 -8.0082 -2.6446 18 6 -2.1229 -9.2977 -2.6875 19 6 -1.7523 -10.1559 -3.7038 20 6 -0.8776 -9.7272 -4.6848 21 6 -0.3762 -8.4410 -4.6474 22 6 -0.7443 -7.5770 -3.6312 23 6 0.4547 -3.5043 -2.2337 24 6 0.2127 -2.4004 -1.1987 25 1 -0.4850 0.8400 -0.0004 26 1 1.0013 -3.9632 1.0617 27 1 2.7105 -3.4908 0.8888 28 1 2.1490 -5.6590 -0.2788 29 1 2.7856 -4.4103 -1.3763 30 1 1.1926 -6.7686 -1.9908 31 1 1.4366 -5.6167 -3.3258 32 1 -1.1363 -6.7257 -0.9335 33 1 -2.5395 -6.1473 -1.9308 34 1 -2.8066 -9.6345 -1.9223 35 1 -2.1454 -11.1614 -3.7323 36 1 -0.5874 -10.3974 -5.4804 37 1 0.3066 -8.1079 -5.4150 38 1 1.3121 -3.2406 -2.8530 39 1 -0.4289 -3.6134 -2.8626 40 1 -0.7037 -2.6102 -0.6471 41 1 0.1255 -1.4368 -1.7006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090977015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:30 Heat of formation + Delta-G solvation = 76.084139 kcal Electronic energy + Delta-G solvation = -20588.647912 eV Core-core repulsion = 17662.503540 eV Total energy + Delta-G solvation = -2926.144372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44775 -39.53501 -36.93593 -35.52715 -33.19370 -31.68283 -31.64153 -29.73277 -27.86334 -26.67609 -24.82281 -24.25598 -23.33026 -22.05846 -20.88057 -20.43208 -18.68742 -17.58446 -16.96273 -16.52611 -16.26107 -15.96449 -15.76509 -15.32654 -15.30148 -14.99544 -14.89238 -14.32359 -13.84930 -13.75288 -13.47854 -13.13970 -12.99124 -12.90951 -12.61139 -12.57040 -12.39170 -12.18405 -12.04814 -11.87817 -11.67515 -11.51969 -11.34651 -11.16005 -10.58487 -9.72684 -9.49747 -9.21999 -8.59790 -7.87335 -5.38642 0.43160 0.50879 1.46569 1.48638 1.55634 2.50329 2.80219 2.92114 3.28293 3.41462 3.53217 3.70539 3.80533 3.98463 4.24537 4.26576 4.30319 4.34972 4.40752 4.54326 4.59659 4.68848 4.70628 4.77359 4.80219 4.85368 4.92909 4.93195 5.04848 5.07447 5.20638 5.24397 5.31294 5.36520 5.53403 5.61928 5.62427 5.68596 5.91649 6.14480 6.20101 6.26192 6.40596 7.15004 7.83605 8.40947 9.18887 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.046564 B = 0.003513 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.176739 B = 7967.583704 C = 8026.371040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.614 5.614 10 C 0.145 3.855 11 C 0.056 3.944 12 N -0.534 5.534 13 C 0.079 3.921 14 C -0.034 4.034 15 H 0.090 0.910 16 C -0.055 4.055 17 C -0.143 4.143 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.141 4.141 23 C 0.052 3.948 24 C 0.190 3.810 25 H 0.251 0.749 26 H 0.016 0.984 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.022 0.978 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.001 0.999 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 -19.228 -8.686 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.401 4.401 8 H 0.081 0.919 9 N -0.338 5.338 10 C 0.020 3.980 11 C -0.074 4.074 12 N -0.258 5.258 13 C -0.048 4.048 14 C -0.053 4.053 15 H 0.108 0.892 16 C -0.091 4.091 17 C -0.143 4.143 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.077 4.077 24 C 0.064 3.936 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.019 0.981 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.277 -19.185 -8.349 21.046 hybrid contribution 0.848 1.396 -0.380 1.677 sum -1.430 -17.789 -8.730 19.867 Atomic orbital electron populations 1.70154 1.06690 1.26026 1.54975 1.25949 0.96134 1.01620 1.00454 0.85325 0.77561 0.79055 0.78355 1.20372 1.21848 1.20023 1.19437 0.91621 0.85486 1.43553 0.91914 1.44324 1.36279 1.04008 1.49215 1.21108 0.97590 0.85827 0.93488 1.22471 0.89766 0.99580 0.95541 1.61828 1.36120 1.03481 1.24382 1.21856 0.95028 0.93798 0.94165 1.21311 0.95785 0.92816 0.95355 0.89173 1.21717 0.99443 0.89507 0.98476 1.22584 0.98086 0.95389 0.98231 1.20633 1.00686 0.91976 0.99681 1.21348 0.98019 1.00350 0.94096 1.21323 0.97747 0.95387 0.99816 1.20626 1.00567 0.93522 0.97799 1.22354 0.98961 0.96640 0.96218 1.22588 0.99346 0.89951 0.95826 1.20528 0.88425 0.95100 0.89503 0.94000 0.96610 0.92301 0.88991 0.95932 0.90349 0.94699 0.89185 0.89365 0.85241 0.83182 0.83262 0.85533 0.96455 0.90121 0.98091 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 11.35 21.65 0.25 -55.74 16 2 C -0.05 -2.58 4.99 84.86 0.42 -2.16 16 3 Si 0.97 45.23 29.57 68.60 2.03 47.26 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.27 -15.24 9.59 84.03 0.81 -14.44 16 8 H 0.06 3.44 7.86 -2.91 -0.02 3.42 16 9 N -0.61 -31.91 3.01 -698.14 -2.10 -34.02 16 10 C 0.15 6.24 6.69 86.35 0.58 6.82 16 11 C 0.06 1.93 5.60 86.38 0.48 2.41 16 12 N -0.53 -18.13 4.41 -895.26 -3.95 -22.08 16 13 C 0.08 2.18 4.73 86.30 0.41 2.58 16 14 C -0.03 -0.88 3.67 -11.09 -0.04 -0.92 16 15 H 0.09 2.35 7.14 -2.38 -0.02 2.33 16 16 C -0.05 -1.39 7.69 30.30 0.23 -1.15 16 17 C -0.14 -3.47 7.49 -19.38 -0.15 -3.62 16 18 C -0.11 -2.30 10.03 22.27 0.22 -2.08 16 19 C -0.12 -2.06 10.04 22.24 0.22 -1.83 16 20 C -0.13 -2.15 10.04 22.24 0.22 -1.93 16 21 C -0.11 -2.23 10.03 22.27 0.22 -2.01 16 22 C -0.14 -3.44 6.97 -19.38 -0.14 -3.57 16 23 C 0.05 2.02 5.46 86.39 0.47 2.49 16 24 C 0.19 9.45 5.36 86.35 0.46 9.91 16 25 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 28 H 0.09 2.64 7.93 -2.39 -0.02 2.62 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 2.04 7.81 -2.38 -0.02 2.02 16 31 H 0.03 0.95 8.05 -2.38 -0.02 0.94 16 32 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 33 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 2.77 6.71 -2.39 -0.02 2.76 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.05 2.66 6.44 -2.39 -0.02 2.64 16 Total: -1.00 -64.84 327.21 1.65 -63.18 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.99 Total: 10.88 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.44 Total: -9.49 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -5.81 Total: -111.83 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.84 1.65 -63.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090977015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.267 kcal (2) G-P(sol) polarization free energy of solvation -64.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds