Wall clock time and date at job start Mon Mar 30 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99689 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47079 * 64.99685 * 4 3 2 6 6 C 1.46900 * 111.00102 * 66.04786 * 5 4 3 7 7 C 1.50698 * 109.46870 * 199.32439 * 6 5 4 8 8 H 1.07991 * 120.00196 * 355.18835 * 7 6 5 9 9 C 1.37883 * 119.99541 * 175.18618 * 7 6 5 10 10 N 1.31515 * 119.99612 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00080 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47242 * 90.00169 * 11 9 7 13 13 H 1.48500 * 109.47299 * 210.00116 * 11 9 7 14 14 H 1.48502 * 109.47165 * 329.99873 * 11 9 7 15 15 C 1.46898 * 110.99771 * 190.00407 * 5 4 3 16 16 C 1.53001 * 109.47556 * 75.92478 * 15 5 4 17 17 H 1.08998 * 109.50562 * 300.52283 * 16 15 5 18 18 C 1.53098 * 109.50445 * 180.43334 * 16 15 5 19 19 N 1.47019 * 109.25104 * 183.21552 * 18 16 15 20 20 C 1.46910 * 110.99606 * 182.39453 * 19 18 16 21 21 C 1.47014 * 110.75408 * 58.62422 * 19 18 16 22 22 C 1.53102 * 109.25284 * 301.37608 * 21 19 18 23 23 O 1.43014 * 109.29424 * 56.83022 * 22 21 19 24 24 H 1.08996 * 109.47170 * 299.99980 * 1 2 3 25 25 H 1.09000 * 109.47005 * 60.00445 * 1 2 3 26 26 H 1.09008 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47481 * 59.99890 * 3 2 1 28 28 H 1.08996 * 109.46621 * 299.99823 * 3 2 1 29 29 H 1.09006 * 109.46759 * 304.99970 * 4 3 2 30 30 H 1.08992 * 109.47159 * 184.99611 * 4 3 2 31 31 H 1.09003 * 109.46638 * 319.32590 * 6 5 4 32 32 H 1.08996 * 109.47051 * 79.31967 * 6 5 4 33 33 H 0.97006 * 119.99468 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47005 * 315.92609 * 15 5 4 35 35 H 1.09003 * 109.46934 * 195.92593 * 15 5 4 36 36 H 1.08992 * 109.51119 * 303.15108 * 18 16 15 37 37 H 1.08993 * 109.50404 * 63.28661 * 18 16 15 38 38 H 1.08997 * 109.46718 * 60.00114 * 20 19 18 39 39 H 1.08993 * 109.46870 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46821 * 300.00519 * 20 19 18 41 41 H 1.08997 * 109.50849 * 61.31313 * 21 19 18 42 42 H 1.09003 * 109.50768 * 181.40454 * 21 19 18 43 43 H 1.09001 * 109.50526 * 176.78387 * 22 21 19 44 44 H 1.08998 * 109.50965 * 296.87040 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9769 0.5628 -1.2562 6 6 3.6950 1.4355 -2.4037 7 6 3.7066 0.6193 -3.6704 8 1 3.9798 -0.4250 -3.6374 9 6 3.3684 1.2058 -4.8716 10 7 3.3791 0.4936 -5.9771 11 14 2.8952 3.0119 -4.9285 12 1 4.1105 3.8353 -5.1528 13 1 1.9333 3.2369 -6.0373 14 1 2.2654 3.3995 -3.6407 15 6 5.4026 0.2138 -1.1979 16 6 5.5860 -1.0413 -0.3423 17 1 5.2087 -0.8547 0.6631 18 6 7.0728 -1.3995 -0.2723 19 7 7.2354 -2.6484 0.4861 20 6 8.6553 -2.9985 0.6257 21 6 6.4827 -3.7425 -0.1445 22 6 5.0017 -3.3608 -0.2159 23 8 4.8652 -2.1285 -0.9287 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9784 2.1766 0.0888 31 1 2.7153 1.8966 -2.2774 32 1 4.4569 2.2125 -2.4650 33 1 3.1415 0.9063 -6.8222 34 1 5.9610 1.0392 -0.7563 35 1 5.7716 0.0235 -2.2058 36 1 7.4631 -1.5328 -1.2811 37 1 7.6172 -0.5975 0.2263 38 1 9.1764 -2.1992 1.1527 39 1 8.7469 -3.9264 1.1901 40 1 9.0960 -3.1296 -0.3626 41 1 6.8635 -3.9133 -1.1514 42 1 6.5969 -4.6510 0.4468 43 1 4.4485 -4.1442 -0.7340 44 1 4.6071 -3.2432 0.7933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091527981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:18 Heat of formation + Delta-G solvation = -64.949664 kcal Electronic energy + Delta-G solvation = -22613.501185 eV Core-core repulsion = 19373.932208 eV Total energy + Delta-G solvation = -3239.568976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39344 -37.77588 -36.23685 -35.21435 -32.49045 -31.65351 -29.49112 -28.75822 -27.49759 -25.95774 -24.75924 -23.86821 -22.32328 -21.80721 -20.10076 -19.58005 -16.86603 -16.14073 -16.00112 -15.81765 -15.65721 -15.18824 -14.82359 -14.71315 -14.37145 -14.28258 -13.76322 -13.43097 -13.27815 -12.87507 -12.33576 -12.31842 -12.11515 -12.01133 -11.83260 -11.65568 -11.41635 -11.24175 -10.95296 -10.79929 -10.66806 -10.47813 -10.29455 -9.75608 -9.67302 -9.24876 -9.09642 -9.03019 -8.47299 -8.36045 -7.19812 -5.93989 -3.88800 3.31268 3.39046 3.39314 3.85376 4.23516 4.29975 4.48897 4.68384 5.05312 5.11989 5.19061 5.35367 5.36704 5.39848 5.48573 5.51993 5.52805 5.63408 5.68187 5.72408 5.74448 5.77236 5.79870 5.85000 5.96712 5.99487 6.04323 6.08593 6.11156 6.23272 6.34371 6.64014 6.89145 6.93070 6.96259 6.97336 7.65779 7.73562 7.78845 8.03959 8.15374 8.79920 9.23099 9.68180 11.19743 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.006109 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.698670 B = 4582.412180 C = 5566.024526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.067 3.933 4 C 0.053 3.947 5 N -0.504 5.504 6 C 0.158 3.842 7 C -0.494 4.494 8 H 0.085 0.915 9 C 0.065 3.935 10 N -0.903 5.903 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.069 3.931 16 C 0.106 3.894 17 H 0.057 0.943 18 C 0.021 3.979 19 N -0.543 5.543 20 C 0.025 3.975 21 C 0.016 3.984 22 C 0.062 3.938 23 O -0.343 6.343 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.030 0.970 32 H -0.019 1.019 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -3.044 15.150 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C -0.010 4.010 4 C -0.076 4.076 5 N -0.227 5.227 6 C 0.032 3.968 7 C -0.532 4.532 8 H 0.103 0.897 9 C -0.135 4.135 10 N -0.543 5.543 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.060 4.060 16 C 0.046 3.954 17 H 0.075 0.925 18 C -0.107 4.107 19 N -0.268 5.268 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.016 4.016 23 O -0.260 6.260 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.048 0.952 32 H -0.001 1.001 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.749 -3.532 15.180 16.030 hybrid contribution 0.521 1.782 -0.621 1.958 sum 4.270 -1.749 14.560 15.273 Atomic orbital electron populations 1.22658 0.82574 1.02148 0.99055 1.88049 1.18087 1.27023 1.95073 1.22590 0.93996 0.85239 0.99182 1.22133 0.93608 0.97047 0.94800 1.61787 1.15413 1.44212 1.01316 1.20300 0.95103 0.91536 0.89843 1.21088 1.44468 0.98912 0.88769 0.89674 1.24901 0.95652 0.97223 0.95726 1.69905 1.49895 1.35918 0.98535 0.86949 0.78729 0.86734 0.77767 1.20481 1.21278 1.19425 1.21983 0.89943 0.92899 1.01184 1.22118 0.88324 0.88147 0.96763 0.92481 1.22844 0.98784 0.92210 0.96897 1.62222 1.10317 1.03649 1.50590 1.22364 0.88264 1.01576 1.00106 1.22855 0.96145 0.94251 0.97940 1.22567 0.93425 0.88231 0.97354 1.88318 1.70374 1.16527 1.50790 0.95289 0.94301 0.90129 0.94368 0.92776 0.91034 0.94773 0.95183 1.00149 0.92907 0.94745 0.88852 0.93579 0.90151 0.91419 0.91511 0.95585 0.93939 0.90262 0.88802 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -6.94 10.65 -35.23 -0.38 -7.31 16 3 C 0.07 1.17 6.02 37.16 0.22 1.39 16 4 C 0.05 0.94 5.17 -3.82 -0.02 0.92 16 5 N -0.50 -10.88 4.18 -236.07 -0.99 -11.86 16 6 C 0.16 3.89 3.68 -4.98 -0.02 3.87 16 7 C -0.49 -14.40 9.07 -34.44 -0.31 -14.71 16 8 H 0.09 2.78 7.99 -52.49 -0.42 2.36 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 11 Si 0.87 21.74 27.57 -169.99 -4.69 17.05 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.27 -6.42 6.41 56.52 0.36 -6.06 16 15 C 0.07 1.32 4.50 -3.82 -0.02 1.31 16 16 C 0.11 1.81 2.87 -26.68 -0.08 1.74 16 17 H 0.06 0.97 6.79 -51.93 -0.35 0.62 16 18 C 0.02 0.31 4.95 -3.71 -0.02 0.29 16 19 N -0.54 -7.23 4.99 -242.59 -1.21 -8.44 16 20 C 0.03 0.26 9.60 60.07 0.58 0.84 16 21 C 0.02 0.21 5.66 -3.71 -0.02 0.19 16 22 C 0.06 0.94 7.01 37.21 0.26 1.20 16 23 O -0.34 -6.74 10.35 -35.23 -0.36 -7.10 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.03 6.08 -51.93 -0.32 0.71 16 29 H 0.07 1.19 6.64 -51.93 -0.34 0.84 16 30 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.03 0.75 4.54 -51.93 -0.24 0.52 16 32 H -0.02 -0.46 7.67 -51.93 -0.40 -0.86 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 35 H 0.09 2.05 7.23 -51.93 -0.38 1.67 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -33.40 344.52 -8.01 -41.42 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.95 Total: -1.91 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 1.59 Total: 0.47 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -1.42 Total: -47.80 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.74 Total: -14.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.69 Total: 17.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.40 -8.01 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091527981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.533 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds