Wall clock time and date at job start Mon Mar 30 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99689 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47079 * 64.99685 * 4 3 2 6 6 C 1.46900 * 111.00102 * 66.04786 * 5 4 3 7 7 C 1.50698 * 109.46870 * 199.32439 * 6 5 4 8 8 H 1.07991 * 120.00196 * 355.18835 * 7 6 5 9 9 C 1.37883 * 119.99541 * 175.18618 * 7 6 5 10 10 N 1.31515 * 119.99612 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00080 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47242 * 90.00169 * 11 9 7 13 13 H 1.48500 * 109.47299 * 210.00116 * 11 9 7 14 14 H 1.48502 * 109.47165 * 329.99873 * 11 9 7 15 15 C 1.46898 * 110.99771 * 190.00407 * 5 4 3 16 16 C 1.53001 * 109.47556 * 75.92478 * 15 5 4 17 17 H 1.08998 * 109.50562 * 300.52283 * 16 15 5 18 18 C 1.53098 * 109.50445 * 180.43334 * 16 15 5 19 19 N 1.47019 * 109.25104 * 183.21552 * 18 16 15 20 20 C 1.46910 * 110.99606 * 182.39453 * 19 18 16 21 21 C 1.47014 * 110.75408 * 58.62422 * 19 18 16 22 22 C 1.53102 * 109.25284 * 301.37608 * 21 19 18 23 23 O 1.43014 * 109.29424 * 56.83022 * 22 21 19 24 24 H 1.08996 * 109.47170 * 299.99980 * 1 2 3 25 25 H 1.09000 * 109.47005 * 60.00445 * 1 2 3 26 26 H 1.09008 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47481 * 59.99890 * 3 2 1 28 28 H 1.08996 * 109.46621 * 299.99823 * 3 2 1 29 29 H 1.09006 * 109.46759 * 304.99970 * 4 3 2 30 30 H 1.08992 * 109.47159 * 184.99611 * 4 3 2 31 31 H 1.09003 * 109.46638 * 319.32590 * 6 5 4 32 32 H 1.08996 * 109.47051 * 79.31967 * 6 5 4 33 33 H 0.97006 * 119.99468 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47005 * 315.92609 * 15 5 4 35 35 H 1.09003 * 109.46934 * 195.92593 * 15 5 4 36 36 H 1.08992 * 109.51119 * 303.15108 * 18 16 15 37 37 H 1.08993 * 109.50404 * 63.28661 * 18 16 15 38 38 H 1.08997 * 109.46718 * 60.00114 * 20 19 18 39 39 H 1.08993 * 109.46870 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46821 * 300.00519 * 20 19 18 41 41 H 1.08997 * 109.50849 * 61.31313 * 21 19 18 42 42 H 1.09003 * 109.50768 * 181.40454 * 21 19 18 43 43 H 1.09001 * 109.50526 * 176.78387 * 22 21 19 44 44 H 1.08998 * 109.50965 * 296.87040 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9769 0.5628 -1.2562 6 6 3.6950 1.4355 -2.4037 7 6 3.7066 0.6193 -3.6704 8 1 3.9798 -0.4250 -3.6374 9 6 3.3684 1.2058 -4.8716 10 7 3.3791 0.4936 -5.9771 11 14 2.8952 3.0119 -4.9285 12 1 4.1105 3.8353 -5.1528 13 1 1.9333 3.2369 -6.0373 14 1 2.2654 3.3995 -3.6407 15 6 5.4026 0.2138 -1.1979 16 6 5.5860 -1.0413 -0.3423 17 1 5.2087 -0.8547 0.6631 18 6 7.0728 -1.3995 -0.2723 19 7 7.2354 -2.6484 0.4861 20 6 8.6553 -2.9985 0.6257 21 6 6.4827 -3.7425 -0.1445 22 6 5.0017 -3.3608 -0.2159 23 8 4.8652 -2.1285 -0.9287 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9784 2.1766 0.0888 31 1 2.7153 1.8966 -2.2774 32 1 4.4569 2.2125 -2.4650 33 1 3.1415 0.9063 -6.8222 34 1 5.9610 1.0392 -0.7563 35 1 5.7716 0.0235 -2.2058 36 1 7.4631 -1.5328 -1.2811 37 1 7.6172 -0.5975 0.2263 38 1 9.1764 -2.1992 1.1527 39 1 8.7469 -3.9264 1.1901 40 1 9.0960 -3.1296 -0.3626 41 1 6.8635 -3.9133 -1.1514 42 1 6.5969 -4.6510 0.4468 43 1 4.4485 -4.1442 -0.7340 44 1 4.6071 -3.2432 0.7933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091527981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:18 Heat of formation + Delta-G solvation = -92.292324 kcal Electronic energy + Delta-G solvation = -22614.686851 eV Core-core repulsion = 19373.932208 eV Total energy + Delta-G solvation = -3240.754643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65815 -39.18408 -37.69311 -36.46247 -34.66094 -33.01213 -31.07591 -30.02949 -29.06290 -27.18884 -26.20612 -24.98815 -24.07375 -23.18048 -21.38066 -21.15516 -18.99938 -17.50631 -17.31392 -17.20125 -16.97658 -16.50725 -16.24141 -15.97960 -15.84811 -15.68963 -15.19503 -14.93766 -14.63853 -14.35912 -14.31265 -13.52197 -13.39455 -13.24616 -13.14581 -12.97716 -12.80977 -12.56301 -12.45150 -12.35791 -12.14365 -11.92564 -11.77078 -11.69319 -11.35787 -11.12510 -10.74967 -10.43128 -10.38295 -9.43718 -8.81971 -8.22216 -6.23535 1.33489 1.36452 1.46449 2.37021 2.76274 2.97308 3.03852 3.09319 3.28015 3.94891 4.00298 4.04538 4.08726 4.18998 4.26718 4.36258 4.41773 4.47571 4.54091 4.57164 4.60760 4.62410 4.64522 4.67502 4.69059 4.73634 4.84337 4.89345 4.91529 4.97105 4.99035 5.01059 5.08327 5.18103 5.62341 5.87749 5.97903 6.07771 6.37359 6.45296 6.58425 6.79216 6.84299 7.38161 8.95647 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.006109 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.698670 B = 4582.412180 C = 5566.024526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.065 3.935 4 C 0.052 3.948 5 N -0.529 5.529 6 C 0.171 3.829 7 C -0.500 4.500 8 H 0.028 0.972 9 C 0.002 3.998 10 N -0.954 5.954 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.247 1.247 15 C 0.071 3.929 16 C 0.111 3.889 17 H 0.065 0.935 18 C 0.029 3.971 19 N -0.547 5.547 20 C 0.024 3.976 21 C 0.022 3.978 22 C 0.057 3.943 23 O -0.389 6.389 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.033 0.967 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.026 0.974 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.022 0.978 41 H 0.028 0.972 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -1.460 17.887 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.012 4.012 4 C -0.076 4.076 5 N -0.253 5.253 6 C 0.044 3.956 7 C -0.539 4.539 8 H 0.047 0.953 9 C -0.194 4.194 10 N -0.596 5.596 11 Si 0.771 3.229 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.170 1.170 15 C -0.057 4.057 16 C 0.052 3.948 17 H 0.083 0.917 18 C -0.100 4.100 19 N -0.272 5.272 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.020 4.020 23 O -0.308 6.308 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.006 0.994 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.015 -1.960 17.957 18.504 hybrid contribution 0.444 1.142 -1.440 1.890 sum 4.459 -0.818 16.517 17.128 Atomic orbital electron populations 1.22827 0.80760 1.03153 1.00091 1.87997 1.20281 1.28237 1.95314 1.22680 0.93651 0.84846 1.00005 1.22266 0.94150 0.98243 0.92951 1.61633 1.17010 1.44479 1.02171 1.20006 0.95340 0.91178 0.89070 1.21261 1.44107 0.96989 0.91549 0.95340 1.25891 0.95489 1.03086 0.94944 1.70089 1.51442 1.38637 0.99429 0.85719 0.78913 0.79551 0.78733 1.19040 1.20927 1.17050 1.21961 0.89097 0.95058 0.99619 1.22073 0.89891 0.86783 0.96005 0.91748 1.22728 0.96941 0.93866 0.96474 1.62268 1.12114 1.03037 1.49755 1.22463 0.86402 1.03061 1.00384 1.22818 0.94609 0.95368 0.97865 1.22749 0.95217 0.86807 0.97272 1.88255 1.71460 1.18476 1.52606 0.92209 0.95160 0.89319 0.90447 0.94797 0.89678 0.92383 0.94878 0.99399 0.92713 0.91889 0.93019 0.95546 0.87842 0.90016 0.89625 0.95974 0.95369 0.87296 0.88405 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -14.80 10.65 -148.98 -1.59 -16.39 16 3 C 0.06 2.12 6.02 71.98 0.43 2.56 16 4 C 0.05 1.72 5.17 86.30 0.45 2.17 16 5 N -0.53 -22.88 4.18 -900.78 -3.77 -26.65 16 6 C 0.17 8.42 3.68 85.56 0.32 8.74 16 7 C -0.50 -30.49 9.07 25.60 0.23 -30.26 16 8 H 0.03 2.00 7.99 -2.92 -0.02 1.98 16 9 C 0.00 0.11 5.47 84.66 0.46 0.57 16 10 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 11 Si 0.95 45.02 27.57 68.60 1.89 46.91 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 14 H -0.25 -10.76 6.41 99.48 0.64 -10.12 16 15 C 0.07 2.77 4.50 86.30 0.39 3.16 16 16 C 0.11 3.81 2.87 30.63 0.09 3.90 16 17 H 0.06 2.10 6.79 -2.39 -0.02 2.08 16 18 C 0.03 0.81 4.95 86.31 0.43 1.24 16 19 N -0.55 -13.62 4.99 -921.42 -4.59 -18.21 16 20 C 0.02 0.45 9.60 127.69 1.23 1.68 16 21 C 0.02 0.54 5.66 86.32 0.49 1.03 16 22 C 0.06 1.71 7.01 72.02 0.50 2.22 16 23 O -0.39 -15.87 10.35 -148.98 -1.54 -17.42 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.03 1.24 6.08 -2.39 -0.01 1.22 16 29 H 0.08 2.61 6.64 -2.38 -0.02 2.59 16 30 H 0.06 1.67 8.12 -2.39 -0.02 1.65 16 31 H 0.03 1.62 4.54 -2.39 -0.01 1.61 16 32 H -0.01 -0.55 7.67 -2.39 -0.02 -0.57 16 33 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 34 H 0.06 2.04 8.00 -2.39 -0.02 2.02 16 35 H 0.05 2.41 7.23 -2.39 -0.02 2.39 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -76.44 344.52 -2.17 -78.61 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.87 Total: 16.01 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.26 Total: -0.94 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -8.06 Total: -106.79 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -3.13 Total: -33.81 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.89 Total: 46.91 kcal Total: -76.44 -2.17 -78.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091527981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.686 kcal (2) G-P(sol) polarization free energy of solvation -76.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds