Wall clock time and date at job start Mon Mar 30 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 H 1.07996 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99959 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99952 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47132 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46972 * 120.00271 * 8 6 4 11 11 H 1.48502 * 109.46999 * 239.99743 * 8 6 4 12 12 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00089 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00335 * 0.02562 * 12 2 1 15 15 N 1.46897 * 109.47099 * 179.97438 * 14 12 2 16 16 C 1.47019 * 111.00388 * 293.63137 * 15 14 12 17 17 C 1.53096 * 109.25836 * 177.60775 * 16 15 14 18 18 O 1.43016 * 109.25780 * 56.85303 * 17 16 15 19 19 C 1.43010 * 113.73521 * 301.32537 * 18 17 16 20 20 H 1.09001 * 109.50703 * 298.73269 * 19 18 17 21 21 C 1.53005 * 109.53929 * 178.62705 * 19 18 17 22 22 O 1.42900 * 109.46838 * 65.19900 * 21 19 18 23 23 C 1.47021 * 111.00018 * 169.99954 * 15 14 12 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 0.96994 * 119.99936 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47188 * 299.99755 * 14 12 2 31 31 H 1.08996 * 109.47042 * 59.99980 * 14 12 2 32 32 H 1.09003 * 109.50496 * 297.54573 * 16 15 14 33 33 H 1.09002 * 109.49801 * 57.67347 * 16 15 14 34 34 H 1.08997 * 109.50848 * 296.91036 * 17 16 15 35 35 H 1.09005 * 109.50073 * 176.78819 * 17 16 15 36 36 H 1.09002 * 109.46913 * 185.19464 * 21 19 18 37 37 H 1.08994 * 109.47241 * 305.20035 * 21 19 18 38 38 H 0.96703 * 113.99778 * 180.02562 * 22 21 19 39 39 H 1.09003 * 109.50353 * 302.32705 * 23 15 14 40 40 H 1.08993 * 109.50327 * 62.41194 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0957 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.5543 3.6175 0.6732 8 14 3.4390 3.4162 3.4340 9 1 2.8619 2.4157 4.3673 10 1 4.9017 3.5239 3.6669 11 1 2.8020 4.7371 3.6677 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 7 2.3399 -3.5889 -0.0027 16 6 3.1005 -3.6307 -1.2601 17 6 4.1221 -4.7692 -1.1947 18 8 3.4413 -5.9993 -0.9325 19 6 2.6910 -5.9938 0.2849 20 1 3.3642 -5.8317 1.1267 21 6 1.9778 -7.3371 0.4525 22 8 2.9475 -8.3739 0.6163 23 6 1.6548 -4.8679 0.2345 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 4.0312 4.4433 0.8504 30 1 0.7583 -2.5307 0.8880 31 1 0.7590 -2.5294 -0.8919 32 1 2.4180 -3.8015 -2.0928 33 1 3.6200 -2.6832 -1.4028 34 1 4.8369 -4.5713 -0.3960 35 1 4.6490 -4.8403 -2.1462 36 1 1.3342 -7.2995 1.3314 37 1 1.3740 -7.5407 -0.4317 38 1 2.5657 -9.2554 0.7278 39 1 1.1192 -4.8235 1.1828 40 1 0.9488 -5.0580 -0.5738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094267972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:58 Heat of formation + Delta-G solvation = -111.572659 kcal Electronic energy + Delta-G solvation = -21656.570438 eV Core-core repulsion = 18279.146642 eV Total energy + Delta-G solvation = -3377.423796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98664 -38.71685 -36.83235 -35.46011 -34.66410 -32.61285 -31.95913 -29.53088 -27.87975 -26.66575 -25.65609 -24.37385 -22.94480 -22.00665 -20.47598 -18.46732 -17.59455 -16.77474 -16.53563 -16.44128 -16.05248 -15.42846 -15.29093 -15.09960 -14.40756 -14.34077 -14.11665 -13.84180 -13.45298 -13.15923 -12.67027 -12.44328 -12.12226 -12.05493 -11.91799 -11.79743 -11.25914 -11.20363 -11.10559 -10.85255 -10.62609 -10.54414 -10.27577 -10.14511 -9.71820 -9.59253 -8.90044 -8.43486 -8.25538 -7.64209 -6.04228 -4.08608 3.30339 3.33865 3.38518 3.43912 3.46100 3.65672 4.00582 4.19897 4.45996 4.81221 4.90605 4.96977 4.98140 5.07642 5.19481 5.20846 5.27800 5.32622 5.35891 5.49734 5.51137 5.60077 5.62125 5.80031 5.92918 6.01034 6.07550 6.15069 6.81487 6.95591 7.08660 7.17028 7.38830 7.42720 7.54043 7.92451 8.23462 8.39877 8.91063 9.10365 9.56580 11.03949 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.003815 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.165258 B = 7338.299603 C = 7486.077892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.605 5.605 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.506 3.494 13 O -0.524 6.524 14 C 0.039 3.961 15 N -0.517 5.517 16 C 0.013 3.987 17 C 0.066 3.934 18 O -0.378 6.378 19 C 0.094 3.906 20 H 0.075 0.925 21 C 0.086 3.914 22 O -0.564 6.564 23 C 0.027 3.973 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.378 0.622 39 H 0.087 0.913 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -18.918 -2.859 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.338 5.338 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.291 3.709 13 O -0.400 6.400 14 C -0.092 4.092 15 N -0.242 5.242 16 C -0.115 4.115 17 C -0.010 4.010 18 O -0.297 6.297 19 C 0.036 3.964 20 H 0.093 0.907 21 C 0.008 3.992 22 O -0.369 6.369 23 C -0.101 4.101 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.225 0.775 39 H 0.105 0.895 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.873 -18.291 -2.708 19.726 hybrid contribution -1.042 0.207 0.593 1.216 sum -7.915 -18.083 -2.115 19.853 Atomic orbital electron populations 1.21625 0.81559 1.01538 1.01180 1.48169 1.06107 1.07807 1.71714 1.19298 0.92520 0.77895 0.97551 1.21469 1.36305 1.06203 0.92342 0.92426 1.24943 0.95357 0.96415 0.97469 1.69941 1.38521 1.14364 1.30671 0.86433 0.78108 0.78244 0.84580 1.19807 1.20851 1.20995 1.20072 0.88240 0.84615 0.77964 1.90635 1.13611 1.86719 1.49016 1.22063 0.94145 0.90665 1.02345 1.61770 1.25404 1.01361 1.35622 1.23003 0.97027 1.02197 0.89225 1.22668 0.93892 0.82555 1.01921 1.87988 1.65858 1.35461 1.40380 1.22064 0.93086 0.92373 0.88888 0.90676 1.22109 0.90337 0.86844 0.99927 1.86559 1.35551 1.18683 1.96125 1.22675 0.95803 0.89739 1.01916 0.93150 0.91315 0.92871 0.93870 0.95041 0.92784 0.88300 0.92504 0.94729 0.87077 0.91865 0.88399 0.92023 0.92907 0.77539 0.89486 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.29 59.85 0.62 1.92 16 2 N -0.60 -12.69 2.86 -182.95 -0.52 -13.21 16 3 C 0.25 6.44 5.20 -5.19 -0.03 6.41 16 4 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.51 10.41 7.38 -10.99 -0.08 10.33 16 13 O -0.52 -13.00 13.93 5.55 0.08 -12.93 16 14 C 0.04 0.58 4.00 -4.98 -0.02 0.56 16 15 N -0.52 -7.84 4.46 -235.75 -1.05 -8.89 16 16 C 0.01 0.20 5.29 -3.71 -0.02 0.18 16 17 C 0.07 0.92 7.01 37.21 0.26 1.18 16 18 O -0.38 -5.41 10.44 -39.69 -0.41 -5.82 16 19 C 0.09 1.16 3.08 -26.68 -0.08 1.08 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 21 C 0.09 0.79 6.71 37.16 0.25 1.04 16 22 O -0.56 -5.75 13.63 -39.69 -0.54 -6.30 16 23 C 0.03 0.32 4.93 -3.71 -0.02 0.30 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 26 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 28 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.10 1.30 8.00 -51.93 -0.42 0.88 16 31 H 0.06 0.73 7.38 -51.93 -0.38 0.34 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 1.97 5.88 -51.93 -0.31 1.66 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.38 1.83 9.12 45.56 0.42 2.25 16 39 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -35.75 327.57 -6.92 -42.67 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.57 Total: -0.81 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 0.46 Total: 9.33 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.84 Total: -48.11 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.88 Total: -25.05 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.75 -6.92 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094267972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.907 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds