Wall clock time and date at job start Mon Mar 30 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 H 1.07996 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99959 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99952 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47132 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46972 * 120.00271 * 8 6 4 11 11 H 1.48502 * 109.46999 * 239.99743 * 8 6 4 12 12 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00089 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00335 * 0.02562 * 12 2 1 15 15 N 1.46897 * 109.47099 * 179.97438 * 14 12 2 16 16 C 1.47019 * 111.00388 * 293.63137 * 15 14 12 17 17 C 1.53096 * 109.25836 * 177.60775 * 16 15 14 18 18 O 1.43016 * 109.25780 * 56.85303 * 17 16 15 19 19 C 1.43010 * 113.73521 * 301.32537 * 18 17 16 20 20 H 1.09001 * 109.50703 * 298.73269 * 19 18 17 21 21 C 1.53005 * 109.53929 * 178.62705 * 19 18 17 22 22 O 1.42900 * 109.46838 * 65.19900 * 21 19 18 23 23 C 1.47021 * 111.00018 * 169.99954 * 15 14 12 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 0.96994 * 119.99936 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47188 * 299.99755 * 14 12 2 31 31 H 1.08996 * 109.47042 * 59.99980 * 14 12 2 32 32 H 1.09003 * 109.50496 * 297.54573 * 16 15 14 33 33 H 1.09002 * 109.49801 * 57.67347 * 16 15 14 34 34 H 1.08997 * 109.50848 * 296.91036 * 17 16 15 35 35 H 1.09005 * 109.50073 * 176.78819 * 17 16 15 36 36 H 1.09002 * 109.46913 * 185.19464 * 21 19 18 37 37 H 1.08994 * 109.47241 * 305.20035 * 21 19 18 38 38 H 0.96703 * 113.99778 * 180.02562 * 22 21 19 39 39 H 1.09003 * 109.50353 * 302.32705 * 23 15 14 40 40 H 1.08993 * 109.50327 * 62.41194 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0957 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.5543 3.6175 0.6732 8 14 3.4390 3.4162 3.4340 9 1 2.8619 2.4157 4.3673 10 1 4.9017 3.5239 3.6669 11 1 2.8020 4.7371 3.6677 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 7 2.3399 -3.5889 -0.0027 16 6 3.1005 -3.6307 -1.2601 17 6 4.1221 -4.7692 -1.1947 18 8 3.4413 -5.9993 -0.9325 19 6 2.6910 -5.9938 0.2849 20 1 3.3642 -5.8317 1.1267 21 6 1.9778 -7.3371 0.4525 22 8 2.9475 -8.3739 0.6163 23 6 1.6548 -4.8679 0.2345 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 4.0312 4.4433 0.8504 30 1 0.7583 -2.5307 0.8880 31 1 0.7590 -2.5294 -0.8919 32 1 2.4180 -3.8015 -2.0928 33 1 3.6200 -2.6832 -1.4028 34 1 4.8369 -4.5713 -0.3960 35 1 4.6490 -4.8403 -2.1462 36 1 1.3342 -7.2995 1.3314 37 1 1.3740 -7.5407 -0.4317 38 1 2.5657 -9.2554 0.7278 39 1 1.1192 -4.8235 1.1828 40 1 0.9488 -5.0580 -0.5738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094267972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:58 Heat of formation + Delta-G solvation = -142.105792 kcal Electronic energy + Delta-G solvation = -21657.894454 eV Core-core repulsion = 18279.146642 eV Total energy + Delta-G solvation = -3378.747812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19490 -40.10710 -37.62671 -36.76339 -36.21972 -34.72201 -32.89724 -30.96595 -29.49233 -27.77855 -27.14182 -25.65099 -24.48317 -23.25807 -21.49164 -20.01381 -18.71413 -18.39369 -17.92037 -17.55280 -17.30819 -16.89821 -16.66986 -16.25372 -16.03495 -15.68156 -15.18685 -14.90167 -14.64350 -14.41519 -14.20173 -13.76423 -13.67634 -13.44043 -13.16824 -13.06797 -12.89783 -12.77728 -12.53144 -12.39799 -12.17963 -12.05010 -11.68482 -11.55500 -10.97618 -10.83607 -10.65202 -10.41602 -9.42675 -9.33313 -8.22952 -6.37524 1.35505 1.38437 1.50014 1.84747 2.18712 2.38908 2.70275 2.83290 3.06514 3.32456 3.70681 3.91661 4.01633 4.08439 4.12869 4.19484 4.25273 4.36981 4.46227 4.50159 4.54380 4.58796 4.60820 4.74594 4.81972 4.91240 4.93968 5.00294 5.03454 5.21552 5.56742 5.76416 5.85826 5.94566 6.06315 6.15570 6.70660 6.81251 6.95976 7.28871 7.52608 8.84134 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.003815 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.165258 B = 7338.299603 C = 7486.077892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.493 3.507 13 O -0.580 6.580 14 C 0.055 3.945 15 N -0.545 5.545 16 C 0.019 3.981 17 C 0.070 3.930 18 O -0.389 6.389 19 C 0.084 3.916 20 H 0.051 0.949 21 C 0.090 3.910 22 O -0.592 6.592 23 C 0.033 3.967 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.099 0.901 27 H -0.004 1.004 28 H 0.024 0.976 29 H 0.267 0.733 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.400 0.600 39 H 0.111 0.889 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 -20.590 -1.907 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.345 5.345 3 C 0.139 3.861 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.282 3.718 13 O -0.459 6.459 14 C -0.076 4.076 15 N -0.271 5.271 16 C -0.109 4.109 17 C -0.007 4.007 18 O -0.308 6.308 19 C 0.026 3.974 20 H 0.069 0.931 21 C 0.012 3.988 22 O -0.401 6.401 23 C -0.094 4.094 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.014 0.986 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.250 0.750 39 H 0.129 0.871 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.493 -20.003 -1.755 22.211 hybrid contribution -0.233 0.682 0.267 0.769 sum -9.726 -19.321 -1.487 21.682 Atomic orbital electron populations 1.21935 0.77807 1.03978 1.02525 1.48194 1.08444 1.06283 1.71614 1.18744 0.91091 0.80360 0.95903 1.21741 1.36609 1.06431 0.93152 0.92971 1.25869 0.94943 0.96495 1.01975 1.70056 1.39064 1.14853 1.32957 0.85361 0.77829 0.78412 0.79157 1.19149 1.20878 1.19292 1.21204 0.88033 0.86265 0.76315 1.90613 1.16393 1.87691 1.51247 1.21978 0.93459 0.87042 1.05074 1.61679 1.26568 1.03043 1.35771 1.22824 0.97358 1.00612 0.90057 1.22611 0.93451 0.82554 1.02042 1.87980 1.66185 1.35242 1.41382 1.22318 0.93005 0.94864 0.87240 0.93074 1.22151 0.89826 0.84928 1.01870 1.86496 1.36994 1.20356 1.96280 1.22728 0.95540 0.87330 1.03840 0.92233 0.91165 0.88239 0.98571 0.95816 0.92425 0.85509 0.89196 0.93223 0.90640 0.93938 0.86791 0.89026 0.91621 0.74994 0.87115 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 10.29 127.77 1.31 3.56 16 2 N -0.61 -25.68 2.86 -851.11 -2.43 -28.11 16 3 C 0.26 14.15 5.20 85.63 0.45 14.59 16 4 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.34 5.46 84.65 0.46 0.81 16 7 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 8 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.49 20.32 7.38 87.66 0.65 20.97 16 13 O -0.58 -30.14 13.93 -3.04 -0.04 -30.18 16 14 C 0.05 1.49 4.00 85.56 0.34 1.83 16 15 N -0.54 -15.64 4.46 -899.76 -4.01 -19.65 16 16 C 0.02 0.58 5.29 86.31 0.46 1.04 16 17 C 0.07 1.97 7.01 72.01 0.50 2.47 16 18 O -0.39 -10.73 10.44 -144.72 -1.51 -12.25 16 19 C 0.08 1.91 3.08 30.63 0.09 2.01 16 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 21 C 0.09 1.39 6.71 71.98 0.48 1.87 16 22 O -0.59 -10.86 13.63 -144.72 -1.97 -12.84 16 23 C 0.03 0.66 4.93 86.31 0.43 1.09 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 1.95 7.89 -2.38 -0.02 1.93 16 26 H 0.10 1.88 6.44 -2.39 -0.02 1.86 16 27 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 28 H 0.02 1.30 7.89 -2.39 -0.02 1.28 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.13 2.76 8.00 -2.39 -0.02 2.74 16 31 H 0.09 1.88 7.38 -2.39 -0.02 1.86 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 2.81 5.88 -2.39 -0.01 2.80 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.40 2.92 9.12 -74.06 -0.68 2.25 16 39 H 0.11 1.69 8.09 -2.39 -0.02 1.67 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -81.84 327.57 -1.89 -83.73 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.36 Total: 9.37 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 5.42 Total: 18.91 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -6.16 Total: -104.28 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -3.53 Total: -55.26 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -81.84 -1.89 -83.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094267972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.378 kcal (2) G-P(sol) polarization free energy of solvation -81.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds