Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99941 * 2 1 4 4 C 1.50703 * 109.47205 * 270.00297 * 3 2 1 5 5 H 1.07993 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99581 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00078 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99525 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47101 * 89.99851 * 8 6 4 10 10 H 1.48496 * 109.47100 * 329.99701 * 8 6 4 11 11 H 1.48504 * 109.47025 * 209.99886 * 8 6 4 12 12 C 1.34778 * 120.00178 * 180.02562 * 2 1 3 13 13 O 1.21277 * 119.99947 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99729 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.47010 * 173.72952 * 14 12 2 16 16 C 1.47012 * 111.00360 * 169.99830 * 15 14 12 17 17 C 1.53091 * 109.26101 * 182.39308 * 16 15 14 18 18 O 1.43019 * 109.25641 * 303.14699 * 17 16 15 19 19 C 1.43012 * 113.73523 * 58.67789 * 18 17 16 20 20 H 1.08995 * 109.51522 * 61.26046 * 19 18 17 21 21 C 1.53000 * 109.50331 * 181.39368 * 19 18 17 22 22 O 1.42899 * 109.47258 * 294.77467 * 21 19 18 23 23 C 1.47018 * 111.00207 * 293.63198 * 15 14 12 24 24 H 1.08996 * 109.47430 * 89.99412 * 1 2 3 25 25 H 1.08994 * 109.47310 * 209.99732 * 1 2 3 26 26 H 1.09001 * 109.47219 * 329.99605 * 1 2 3 27 27 H 1.09001 * 109.46757 * 150.00541 * 3 2 1 28 28 H 1.08997 * 109.46839 * 30.00562 * 3 2 1 29 29 H 0.96993 * 120.00219 * 0.02562 * 7 6 4 30 30 H 1.09002 * 109.47101 * 293.72950 * 14 12 2 31 31 H 1.08996 * 109.46943 * 53.72883 * 14 12 2 32 32 H 1.09003 * 109.50359 * 302.32795 * 16 15 14 33 33 H 1.09003 * 109.50627 * 62.45190 * 16 15 14 34 34 H 1.09006 * 109.50641 * 183.21570 * 17 16 15 35 35 H 1.08999 * 109.54547 * 63.10911 * 17 16 15 36 36 H 1.08997 * 109.47608 * 54.78115 * 21 19 18 37 37 H 1.09002 * 109.47182 * 174.77709 * 21 19 18 38 38 H 0.96696 * 114.00282 * 180.02562 * 22 21 19 39 39 H 1.09002 * 109.50266 * 297.54546 * 23 15 14 40 40 H 1.09002 * 109.50648 * 57.62789 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6176 -0.6730 8 14 3.4387 3.4165 -3.4338 9 1 2.3091 4.2598 -3.9009 10 1 3.5557 2.2193 -4.3045 11 1 4.6993 4.1990 -3.4962 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 7 2.3327 -3.5847 -0.1524 16 6 1.6702 -4.8764 0.0794 17 6 2.7035 -6.0007 -0.0296 18 8 3.3348 -5.9384 -1.3114 19 6 3.9906 -4.6942 -1.5702 20 1 4.7786 -4.5377 -0.8336 21 6 4.5998 -4.7201 -2.9735 22 8 5.6339 -5.7049 -3.0258 23 6 2.9703 -3.5566 -1.4768 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.3925 3.3376 0.2415 30 1 0.8459 -2.5804 0.9405 31 1 0.6769 -2.4828 -0.8288 32 1 1.2271 -4.8846 1.0753 33 1 0.8905 -5.0249 -0.6677 34 1 2.2066 -6.9641 0.0850 35 1 3.4541 -5.8831 0.7520 36 1 3.8264 -4.9663 -3.7009 37 1 5.0185 -3.7409 -3.2059 38 1 6.0658 -5.7763 -3.8880 39 1 2.2114 -3.6840 -2.2488 40 1 3.4756 -2.6011 -1.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094267973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = -116.071070 kcal Electronic energy + Delta-G solvation = -21941.627167 eV Core-core repulsion = 18564.008305 eV Total energy + Delta-G solvation = -3377.618862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01653 -38.76208 -36.72114 -35.51803 -34.78605 -32.87419 -31.91406 -29.57065 -27.62158 -26.58810 -25.56216 -24.45659 -22.83931 -22.09915 -20.46788 -18.68681 -17.45780 -17.00618 -16.70061 -16.50867 -16.13684 -15.51953 -15.21980 -15.01443 -14.41395 -14.22062 -13.98662 -13.76440 -13.51582 -13.09008 -12.91296 -12.40262 -12.35140 -12.09979 -11.89610 -11.82719 -11.33898 -11.29952 -11.08186 -10.94031 -10.60960 -10.55754 -10.14793 -10.11373 -9.72278 -9.15010 -9.00115 -8.41213 -8.32710 -7.65203 -6.41313 -4.13457 3.28994 3.39430 3.42577 3.44905 3.60114 3.67964 3.92343 4.28972 4.50717 4.83661 4.90907 4.97751 5.03818 5.12026 5.21760 5.23211 5.33050 5.35252 5.40436 5.42839 5.44669 5.54157 5.67640 5.73333 5.82332 5.96294 6.02058 6.05551 6.69205 6.85594 6.92334 7.10806 7.16125 7.36690 7.54597 8.00742 8.24569 8.39720 8.74952 8.99408 9.56379 10.96124 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.005092 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.957452 B = 5497.185894 C = 6606.595056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.601 5.601 3 C 0.236 3.764 4 C -0.606 4.606 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 1.074 2.926 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.523 6.523 14 C 0.039 3.961 15 N -0.517 5.517 16 C 0.017 3.983 17 C 0.066 3.934 18 O -0.378 6.378 19 C 0.098 3.902 20 H 0.077 0.923 21 C 0.085 3.915 22 O -0.566 6.566 23 C 0.024 3.976 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.021 0.979 29 H 0.268 0.732 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.378 0.622 39 H 0.038 0.962 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -16.785 -1.175 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.335 5.335 3 C 0.117 3.883 4 C -0.645 4.645 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.545 5.545 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.398 6.398 14 C -0.092 4.092 15 N -0.242 5.242 16 C -0.111 4.111 17 C -0.011 4.011 18 O -0.296 6.296 19 C 0.040 3.960 20 H 0.095 0.905 21 C 0.007 3.993 22 O -0.371 6.371 23 C -0.104 4.104 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.225 0.775 39 H 0.056 0.944 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.504 -15.742 -1.235 16.421 hybrid contribution -1.552 -0.866 -0.060 1.778 sum -6.055 -16.608 -1.296 17.725 Atomic orbital electron populations 1.21611 0.81327 1.01620 1.01190 1.47975 1.06107 1.07432 1.71953 1.19355 0.92032 0.78828 0.98132 1.22246 1.40685 1.09634 0.91894 0.93180 1.25806 0.93308 0.93328 1.06022 1.70768 1.44025 1.39605 1.00136 0.83471 0.76882 0.75599 0.73823 1.21436 1.21598 1.20809 1.20130 0.88267 0.84616 0.77926 1.90654 1.13602 1.86776 1.48816 1.22052 0.93973 0.90577 1.02571 1.61772 1.30902 1.01337 1.30167 1.22846 0.96503 0.89891 1.01900 1.22612 0.94701 0.97695 0.86129 1.87998 1.71354 1.35310 1.34985 1.22088 0.93943 0.83280 0.96685 0.90493 1.22117 0.89781 0.91849 0.95580 1.86514 1.52659 1.60076 1.37854 1.22798 0.97376 1.01230 0.88956 0.93191 0.92639 0.91370 0.94791 0.96116 0.92167 0.88230 0.92415 0.89561 0.94023 0.88493 0.92177 0.92958 0.91482 0.77524 0.94382 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.17 59.85 0.61 1.95 16 2 N -0.60 -12.65 2.86 -182.96 -0.52 -13.18 16 3 C 0.24 6.12 4.52 -5.19 -0.02 6.10 16 4 C -0.61 -17.24 9.39 -34.44 -0.32 -17.56 16 5 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -27.67 13.65 55.43 0.76 -26.91 16 8 Si 1.07 25.46 29.90 -169.99 -5.08 20.38 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.51 10.42 7.24 -10.98 -0.08 10.34 16 13 O -0.52 -13.03 14.26 5.56 0.08 -12.95 16 14 C 0.04 0.59 3.91 -4.98 -0.02 0.57 16 15 N -0.52 -7.87 4.42 -235.75 -1.04 -8.91 16 16 C 0.02 0.20 5.64 -3.72 -0.02 0.17 16 17 C 0.07 0.77 7.01 37.20 0.26 1.03 16 18 O -0.38 -5.50 10.44 -39.73 -0.41 -5.92 16 19 C 0.10 1.46 3.09 -26.68 -0.08 1.37 16 20 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 21 C 0.09 1.08 6.71 37.16 0.25 1.33 16 22 O -0.57 -7.14 13.63 -39.73 -0.54 -7.68 16 23 C 0.02 0.38 4.58 -3.71 -0.02 0.37 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.65 6.61 -51.93 -0.34 0.31 16 26 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 27 H 0.03 0.98 7.29 -51.93 -0.38 0.61 16 28 H 0.02 0.54 7.76 -51.93 -0.40 0.13 16 29 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 30 H 0.10 1.24 7.61 -51.93 -0.40 0.84 16 31 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 32 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.38 2.79 9.12 45.56 0.42 3.20 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 2.05 6.11 -51.93 -0.32 1.73 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -36.02 326.75 -6.93 -42.95 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.54 Total: 1.15 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 0.46 Total: 6.15 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.81 Total: -49.00 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.88 Total: -26.55 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.02 -6.93 -42.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094267973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.122 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds