Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99941 * 2 1 4 4 C 1.50703 * 109.47205 * 270.00297 * 3 2 1 5 5 H 1.07993 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99581 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00078 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99525 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47101 * 89.99851 * 8 6 4 10 10 H 1.48496 * 109.47100 * 329.99701 * 8 6 4 11 11 H 1.48504 * 109.47025 * 209.99886 * 8 6 4 12 12 C 1.34778 * 120.00178 * 180.02562 * 2 1 3 13 13 O 1.21277 * 119.99947 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99729 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.47010 * 173.72952 * 14 12 2 16 16 C 1.47012 * 111.00360 * 169.99830 * 15 14 12 17 17 C 1.53091 * 109.26101 * 182.39308 * 16 15 14 18 18 O 1.43019 * 109.25641 * 303.14699 * 17 16 15 19 19 C 1.43012 * 113.73523 * 58.67789 * 18 17 16 20 20 H 1.08995 * 109.51522 * 61.26046 * 19 18 17 21 21 C 1.53000 * 109.50331 * 181.39368 * 19 18 17 22 22 O 1.42899 * 109.47258 * 294.77467 * 21 19 18 23 23 C 1.47018 * 111.00207 * 293.63198 * 15 14 12 24 24 H 1.08996 * 109.47430 * 89.99412 * 1 2 3 25 25 H 1.08994 * 109.47310 * 209.99732 * 1 2 3 26 26 H 1.09001 * 109.47219 * 329.99605 * 1 2 3 27 27 H 1.09001 * 109.46757 * 150.00541 * 3 2 1 28 28 H 1.08997 * 109.46839 * 30.00562 * 3 2 1 29 29 H 0.96993 * 120.00219 * 0.02562 * 7 6 4 30 30 H 1.09002 * 109.47101 * 293.72950 * 14 12 2 31 31 H 1.08996 * 109.46943 * 53.72883 * 14 12 2 32 32 H 1.09003 * 109.50359 * 302.32795 * 16 15 14 33 33 H 1.09003 * 109.50627 * 62.45190 * 16 15 14 34 34 H 1.09006 * 109.50641 * 183.21570 * 17 16 15 35 35 H 1.08999 * 109.54547 * 63.10911 * 17 16 15 36 36 H 1.08997 * 109.47608 * 54.78115 * 21 19 18 37 37 H 1.09002 * 109.47182 * 174.77709 * 21 19 18 38 38 H 0.96696 * 114.00282 * 180.02562 * 22 21 19 39 39 H 1.09002 * 109.50266 * 297.54546 * 23 15 14 40 40 H 1.09002 * 109.50648 * 57.62789 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6176 -0.6730 8 14 3.4387 3.4165 -3.4338 9 1 2.3091 4.2598 -3.9009 10 1 3.5557 2.2193 -4.3045 11 1 4.6993 4.1990 -3.4962 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 7 2.3327 -3.5847 -0.1524 16 6 1.6702 -4.8764 0.0794 17 6 2.7035 -6.0007 -0.0296 18 8 3.3348 -5.9384 -1.3114 19 6 3.9906 -4.6942 -1.5702 20 1 4.7786 -4.5377 -0.8336 21 6 4.5998 -4.7201 -2.9735 22 8 5.6339 -5.7049 -3.0258 23 6 2.9703 -3.5566 -1.4768 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.3925 3.3376 0.2415 30 1 0.8459 -2.5804 0.9405 31 1 0.6769 -2.4828 -0.8288 32 1 1.2271 -4.8846 1.0753 33 1 0.8905 -5.0249 -0.6677 34 1 2.2066 -6.9641 0.0850 35 1 3.4541 -5.8831 0.7520 36 1 3.8264 -4.9663 -3.7009 37 1 5.0185 -3.7409 -3.2059 38 1 6.0658 -5.7763 -3.8880 39 1 2.2114 -3.6840 -2.2488 40 1 3.4756 -2.6011 -1.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094267973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = -146.781209 kcal Electronic energy + Delta-G solvation = -21942.958858 eV Core-core repulsion = 18564.008305 eV Total energy + Delta-G solvation = -3378.950553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27665 -40.18082 -37.72764 -36.92763 -36.30420 -34.95891 -32.94985 -30.91221 -29.24499 -27.79154 -27.05731 -25.86842 -24.55330 -23.31752 -21.54389 -20.28881 -19.06119 -18.45909 -18.04890 -17.64307 -17.42099 -16.89979 -16.59401 -16.10330 -15.83390 -15.67311 -15.47256 -15.00726 -14.78266 -14.58861 -14.27892 -13.86603 -13.66987 -13.54843 -13.26014 -13.12377 -13.06284 -12.83125 -12.46470 -12.45008 -12.08964 -11.99832 -11.62310 -11.20054 -11.07426 -10.89875 -10.62364 -10.52321 -9.49927 -9.41876 -8.70289 -6.46508 1.47460 1.57820 1.73434 1.75875 2.10584 2.51749 2.64690 2.70400 3.08750 3.27460 3.65359 3.86561 3.89795 3.94024 4.11811 4.17820 4.20700 4.27059 4.34901 4.39584 4.48519 4.50646 4.61442 4.66685 4.70959 4.77345 4.84248 4.87709 4.92367 4.95220 5.52640 5.69325 5.80722 5.88888 6.12237 6.13303 6.43554 6.67461 6.83772 7.28572 7.42334 8.64400 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.005092 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.957452 B = 5497.185894 C = 6606.595056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.610 5.610 3 C 0.246 3.754 4 C -0.615 4.615 5 H 0.044 0.956 6 C -0.032 4.032 7 N -0.932 5.932 8 Si 1.121 2.879 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.579 6.579 14 C 0.054 3.946 15 N -0.541 5.541 16 C 0.021 3.979 17 C 0.058 3.942 18 O -0.388 6.388 19 C 0.101 3.899 20 H 0.049 0.951 21 C 0.087 3.913 22 O -0.584 6.584 23 C 0.033 3.967 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.070 0.930 27 H -0.009 1.009 28 H 0.019 0.981 29 H 0.255 0.745 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.050 0.950 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -18.535 -2.100 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C 0.124 3.876 4 C -0.653 4.653 5 H 0.062 0.938 6 C -0.230 4.230 7 N -0.569 5.569 8 Si 0.942 3.058 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.458 6.458 14 C -0.076 4.076 15 N -0.267 5.267 16 C -0.106 4.106 17 C -0.019 4.019 18 O -0.307 6.307 19 C 0.043 3.957 20 H 0.067 0.933 21 C 0.009 3.991 22 O -0.392 6.392 23 C -0.096 4.096 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.009 0.991 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.154 0.846 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.250 0.750 39 H 0.068 0.932 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.902 -17.528 -2.154 18.960 hybrid contribution -0.818 -0.391 0.303 0.956 sum -7.721 -17.919 -1.851 19.599 Atomic orbital electron populations 1.21931 0.77638 1.04185 1.02401 1.48043 1.08406 1.05923 1.71849 1.18879 0.90911 0.81384 0.96404 1.22527 1.40391 1.09550 0.92834 0.93775 1.27359 0.92624 0.93662 1.09349 1.70892 1.45590 1.40427 1.00012 0.82893 0.77545 0.76049 0.69359 1.18765 1.20302 1.20797 1.21268 0.88047 0.86246 0.76226 1.90629 1.16398 1.87728 1.51080 1.22002 0.93251 0.86997 1.05335 1.61712 1.32089 1.03057 1.29846 1.22949 0.96370 0.87470 1.03840 1.22895 0.94697 0.99569 0.84691 1.87983 1.71484 1.34797 1.36453 1.21977 0.93138 0.83466 0.97167 0.93333 1.22073 0.90282 0.92002 0.94727 1.86455 1.52852 1.59928 1.39998 1.22583 0.97609 0.99417 0.89946 0.92543 0.87856 0.91133 0.99079 0.96342 0.93541 0.84593 0.89958 0.86873 0.92555 0.85211 0.93174 0.91342 0.91525 0.75011 0.93203 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.17 127.77 1.30 3.58 16 2 N -0.61 -25.51 2.86 -851.14 -2.43 -27.95 16 3 C 0.25 13.22 4.52 85.63 0.39 13.61 16 4 C -0.61 -35.72 9.39 25.60 0.24 -35.48 16 5 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 6 C -0.03 -1.86 5.46 84.66 0.46 -1.40 16 7 N -0.93 -58.23 13.65 21.45 0.29 -57.94 16 8 Si 1.12 51.11 29.90 68.60 2.05 53.16 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.49 20.32 7.24 87.66 0.63 20.95 16 13 O -0.58 -30.14 14.26 -3.02 -0.04 -30.18 16 14 C 0.05 1.48 3.91 85.56 0.33 1.82 16 15 N -0.54 -15.53 4.42 -899.78 -3.98 -19.51 16 16 C 0.02 0.41 5.64 86.31 0.49 0.89 16 17 C 0.06 1.21 7.01 72.01 0.50 1.72 16 18 O -0.39 -10.72 10.44 -144.68 -1.51 -12.23 16 19 C 0.10 3.00 3.09 30.63 0.09 3.10 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 21 C 0.09 2.19 6.71 71.98 0.48 2.68 16 22 O -0.58 -14.34 13.63 -144.68 -1.97 -16.31 16 23 C 0.03 1.02 4.58 86.31 0.40 1.42 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.10 1.94 6.61 -2.39 -0.02 1.92 16 26 H 0.07 1.96 7.89 -2.39 -0.02 1.94 16 27 H -0.01 -0.54 7.29 -2.39 -0.02 -0.56 16 28 H 0.02 0.99 7.76 -2.39 -0.02 0.98 16 29 H 0.26 16.15 7.22 -92.71 -0.67 15.48 16 30 H 0.14 2.72 7.61 -2.39 -0.02 2.70 16 31 H 0.08 1.88 7.90 -2.39 -0.02 1.86 16 32 H 0.11 1.63 8.09 -2.39 -0.02 1.61 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.40 5.46 9.12 -74.06 -0.68 4.78 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 2.69 6.11 -2.39 -0.01 2.68 16 Total: -1.00 -82.38 326.75 -1.81 -84.19 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.46 Total: 13.88 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.32 Total: 12.88 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -6.12 Total: -105.39 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -3.52 Total: -58.73 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -82.38 -1.81 -84.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094267973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.588 kcal (2) G-P(sol) polarization free energy of solvation -82.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds