Wall clock time and date at job start Mon Mar 30 2020 04:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.51220 * 2 1 4 4 C 1.53095 * 109.50959 * 239.91230 * 2 1 3 5 5 N 1.47017 * 109.25926 * 183.21930 * 4 2 1 6 6 C 1.47012 * 110.75599 * 58.61470 * 5 4 2 7 7 C 1.53099 * 109.25632 * 301.38667 * 6 5 4 8 8 H 1.09004 * 109.50534 * 296.86646 * 7 6 5 9 9 C 1.53001 * 109.50378 * 176.78154 * 7 6 5 10 10 O 1.42897 * 109.46947 * 175.08536 * 9 7 6 11 11 C 1.42906 * 114.00168 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47045 * 180.02562 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27121 * 12 11 10 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47276 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99925 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00389 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46843 * 60.00309 * 20 18 16 22 22 H 1.48498 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47284 * 300.00154 * 20 18 16 24 24 O 1.43016 * 109.29397 * 56.82771 * 7 6 5 25 25 H 1.09000 * 109.47334 * 180.08980 * 1 2 3 26 26 H 1.09001 * 109.47553 * 300.08605 * 1 2 3 27 27 H 1.08999 * 109.47304 * 60.08909 * 1 2 3 28 28 H 1.08993 * 109.50737 * 63.28069 * 4 2 1 29 29 H 1.09002 * 109.54297 * 303.16986 * 4 2 1 30 30 H 1.00898 * 110.99852 * 294.83528 * 5 4 2 31 31 H 1.08994 * 109.50661 * 181.45057 * 6 5 4 32 32 H 1.09007 * 109.53711 * 61.34064 * 6 5 4 33 33 H 1.08995 * 109.47267 * 55.08712 * 9 7 6 34 34 H 1.08995 * 109.47083 * 295.08377 * 9 7 6 35 35 H 1.09005 * 109.47002 * 59.99866 * 11 10 9 36 36 H 1.09002 * 109.46834 * 300.00233 * 11 10 9 37 37 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 38 38 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 39 39 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 40 40 H 0.96998 * 120.00132 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2486 5 7 3.5093 -0.7880 -1.2046 6 6 3.9639 -1.4884 0.0053 7 6 3.4334 -0.7573 1.2414 8 1 3.8540 0.2477 1.2783 9 6 3.8357 -1.5261 2.5016 10 8 3.4402 -0.7855 3.6579 11 6 3.7717 -1.4190 4.8953 12 6 3.3105 -0.5555 6.0410 13 8 2.7485 0.4962 5.8198 14 7 3.5182 -0.9544 7.3116 15 6 3.0704 -0.1147 8.4254 16 6 3.4210 -0.7822 9.7302 17 1 3.9264 -1.7367 9.7299 18 6 3.0955 -0.1749 10.9245 19 7 2.4787 0.9866 10.9250 20 14 3.5295 -1.0026 12.5419 21 1 5.0004 -1.1891 12.6234 22 1 3.0745 -0.1520 13.6709 23 1 2.8579 -2.3250 12.6171 24 8 2.0075 -0.6759 1.1665 25 1 -0.3634 -1.0276 0.0016 26 1 -0.3634 0.5152 0.8892 27 1 -0.3634 0.5124 -0.8908 28 1 1.7273 -0.1787 -2.1390 29 1 1.6332 -1.7338 -1.2773 30 1 3.9137 0.1346 -1.2619 31 1 5.0535 -1.5020 0.0303 32 1 3.5872 -2.5113 -0.0022 33 1 4.9165 -1.6664 2.5121 34 1 3.3430 -2.4983 2.5068 35 1 4.8514 -1.5566 4.9552 36 1 3.2781 -2.3892 4.9504 37 1 3.9649 -1.7971 7.4885 38 1 3.5637 0.8557 8.3700 39 1 1.9907 0.0226 8.3657 40 1 2.2495 1.4136 11.7652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132681775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:45 Heat of formation + Delta-G solvation = -131.442286 kcal Electronic energy + Delta-G solvation = -20734.642771 eV Core-core repulsion = 17356.357364 eV Total energy + Delta-G solvation = -3378.285407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09351 -38.93505 -37.20758 -34.77920 -34.15491 -33.49373 -32.33351 -29.91553 -28.48409 -26.76148 -25.84982 -23.92880 -22.44897 -22.16626 -21.27579 -19.76690 -17.31655 -17.06135 -16.86405 -16.61035 -15.86123 -15.78422 -15.58036 -15.15234 -14.76532 -14.58375 -14.04761 -13.95896 -13.16874 -13.04194 -12.86593 -12.42234 -12.30600 -12.29058 -12.03760 -11.89200 -11.59180 -11.49992 -11.38718 -11.21337 -10.99554 -10.86446 -10.31796 -10.29752 -9.66418 -9.41253 -8.99423 -8.73199 -8.60533 -7.88513 -6.16100 -4.23458 3.23023 3.25429 3.30619 3.32606 3.35795 3.36911 3.78071 4.22588 4.36771 4.48526 4.61955 4.72566 4.77653 4.92104 5.01784 5.04418 5.13103 5.18188 5.19663 5.23439 5.33372 5.42978 5.46402 5.52670 5.59116 5.62255 5.74265 5.93932 6.38340 6.82715 6.96691 7.09677 7.32886 7.43957 7.52481 7.67421 7.97068 8.61270 8.78549 9.10392 9.43014 10.94111 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.002751 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.818317 B =10173.995102 C =10589.089297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 H 0.057 0.943 4 C 0.024 3.976 5 N -0.681 5.681 6 C 0.029 3.971 7 C 0.057 3.943 8 H 0.067 0.933 9 C 0.070 3.930 10 O -0.353 6.353 11 C 0.044 3.956 12 C 0.498 3.502 13 O -0.535 6.535 14 N -0.712 5.712 15 C 0.251 3.749 16 C -0.544 4.544 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 O -0.361 6.361 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.342 0.658 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -6.720 -23.334 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 H 0.075 0.925 4 C -0.105 4.105 5 N -0.309 5.309 6 C -0.101 4.101 7 C -0.003 4.003 8 H 0.085 0.915 9 C -0.007 4.007 10 O -0.271 6.271 11 C -0.037 4.037 12 C 0.282 3.718 13 O -0.412 6.412 14 N -0.363 5.363 15 C 0.131 3.869 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 O -0.280 6.280 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.223 0.777 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.107 -6.253 -23.647 24.550 hybrid contribution 0.562 -0.261 1.603 1.719 sum 2.669 -6.514 -22.044 23.140 Atomic orbital electron populations 1.21692 0.92471 1.03081 1.02757 1.22823 0.96415 0.95420 0.86577 0.92487 1.22770 0.87943 1.02250 0.97566 1.60920 1.07765 1.24274 1.37930 1.22625 1.01102 0.99116 0.87289 1.22813 0.83062 0.99797 0.94629 0.91489 1.22443 0.98506 0.95021 0.84771 1.88098 1.81584 1.45435 1.11959 1.22314 1.00152 0.96237 0.84948 1.20077 0.80817 0.86932 0.84011 1.90689 1.41917 1.23929 1.84619 1.46369 1.59497 1.24747 1.05653 1.19116 0.95743 0.90362 0.81683 1.21182 1.40245 1.06432 0.90406 0.91896 1.24959 0.94738 0.94880 0.99463 1.69966 1.39297 1.15551 1.27440 0.86457 0.78816 0.79254 0.82263 1.20061 1.21061 1.20058 1.88194 1.19646 1.78103 1.42035 0.91720 0.91360 0.91057 0.89572 0.89799 0.84017 0.89220 0.89588 0.91639 0.92315 0.90864 0.90766 0.77710 0.95479 0.95444 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.57 37.15 0.36 -0.91 16 2 C 0.05 0.47 3.42 -26.69 -0.09 0.38 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.02 0.19 6.05 -3.71 -0.02 0.17 16 5 N -0.68 -5.42 6.93 -113.50 -0.79 -6.21 16 6 C 0.03 0.23 6.05 -3.71 -0.02 0.21 16 7 C 0.06 0.63 3.08 -26.68 -0.08 0.54 16 8 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.07 0.81 5.60 37.16 0.21 1.01 16 10 O -0.35 -5.91 9.84 -59.65 -0.59 -6.49 16 11 C 0.04 0.67 6.42 36.00 0.23 0.90 16 12 C 0.50 10.57 7.91 -10.98 -0.09 10.49 16 13 O -0.53 -14.09 16.50 -14.35 -0.24 -14.32 16 14 N -0.71 -15.29 5.55 -61.47 -0.34 -15.63 16 15 C 0.25 6.79 5.43 -5.20 -0.03 6.77 16 16 C -0.54 -14.87 9.28 -34.44 -0.32 -15.18 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 O -0.36 -4.84 10.08 -39.86 -0.40 -5.24 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.34 2.34 8.89 -39.29 -0.35 1.99 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -35.40 336.55 -8.09 -43.49 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.56 Total: 3.02 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 0.04 Total: 6.05 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.39 Total: -47.44 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -1.23 Total: -26.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.40 -8.09 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132681775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.952 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds