Wall clock time and date at job start Mon Mar 30 2020 04:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.51220 * 2 1 4 4 C 1.53095 * 109.50959 * 239.91230 * 2 1 3 5 5 N 1.47017 * 109.25926 * 183.21930 * 4 2 1 6 6 C 1.47012 * 110.75599 * 58.61470 * 5 4 2 7 7 C 1.53099 * 109.25632 * 301.38667 * 6 5 4 8 8 H 1.09004 * 109.50534 * 296.86646 * 7 6 5 9 9 C 1.53001 * 109.50378 * 176.78154 * 7 6 5 10 10 O 1.42897 * 109.46947 * 175.08536 * 9 7 6 11 11 C 1.42906 * 114.00168 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47045 * 180.02562 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27121 * 12 11 10 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47276 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99925 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00389 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46843 * 60.00309 * 20 18 16 22 22 H 1.48498 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47284 * 300.00154 * 20 18 16 24 24 O 1.43016 * 109.29397 * 56.82771 * 7 6 5 25 25 H 1.09000 * 109.47334 * 180.08980 * 1 2 3 26 26 H 1.09001 * 109.47553 * 300.08605 * 1 2 3 27 27 H 1.08999 * 109.47304 * 60.08909 * 1 2 3 28 28 H 1.08993 * 109.50737 * 63.28069 * 4 2 1 29 29 H 1.09002 * 109.54297 * 303.16986 * 4 2 1 30 30 H 1.00898 * 110.99852 * 294.83528 * 5 4 2 31 31 H 1.08994 * 109.50661 * 181.45057 * 6 5 4 32 32 H 1.09007 * 109.53711 * 61.34064 * 6 5 4 33 33 H 1.08995 * 109.47267 * 55.08712 * 9 7 6 34 34 H 1.08995 * 109.47083 * 295.08377 * 9 7 6 35 35 H 1.09005 * 109.47002 * 59.99866 * 11 10 9 36 36 H 1.09002 * 109.46834 * 300.00233 * 11 10 9 37 37 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 38 38 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 39 39 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 40 40 H 0.96998 * 120.00132 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2486 5 7 3.5093 -0.7880 -1.2046 6 6 3.9639 -1.4884 0.0053 7 6 3.4334 -0.7573 1.2414 8 1 3.8540 0.2477 1.2783 9 6 3.8357 -1.5261 2.5016 10 8 3.4402 -0.7855 3.6579 11 6 3.7717 -1.4190 4.8953 12 6 3.3105 -0.5555 6.0410 13 8 2.7485 0.4962 5.8198 14 7 3.5182 -0.9544 7.3116 15 6 3.0704 -0.1147 8.4254 16 6 3.4210 -0.7822 9.7302 17 1 3.9264 -1.7367 9.7299 18 6 3.0955 -0.1749 10.9245 19 7 2.4787 0.9866 10.9250 20 14 3.5295 -1.0026 12.5419 21 1 5.0004 -1.1891 12.6234 22 1 3.0745 -0.1520 13.6709 23 1 2.8579 -2.3250 12.6171 24 8 2.0075 -0.6759 1.1665 25 1 -0.3634 -1.0276 0.0016 26 1 -0.3634 0.5152 0.8892 27 1 -0.3634 0.5124 -0.8908 28 1 1.7273 -0.1787 -2.1390 29 1 1.6332 -1.7338 -1.2773 30 1 3.9137 0.1346 -1.2619 31 1 5.0535 -1.5020 0.0303 32 1 3.5872 -2.5113 -0.0022 33 1 4.9165 -1.6664 2.5121 34 1 3.3430 -2.4983 2.5068 35 1 4.8514 -1.5566 4.9552 36 1 3.2781 -2.3892 4.9504 37 1 3.9649 -1.7971 7.4885 38 1 3.5637 0.8557 8.3700 39 1 1.9907 0.0226 8.3657 40 1 2.2495 1.4136 11.7652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132681775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:45 Heat of formation + Delta-G solvation = -160.944486 kcal Electronic energy + Delta-G solvation = -20735.922083 eV Core-core repulsion = 17356.357364 eV Total energy + Delta-G solvation = -3379.564719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93024 -40.53910 -38.45422 -36.15940 -35.51250 -34.40730 -34.27428 -30.95838 -29.98139 -28.17303 -26.89376 -24.78194 -24.37999 -22.97141 -22.02935 -21.54564 -19.08449 -18.05760 -17.92718 -17.58091 -17.30034 -16.98872 -16.80863 -16.47073 -16.21968 -15.61079 -15.47773 -15.36844 -14.59560 -14.13721 -14.04573 -13.81192 -13.63982 -13.34904 -13.09383 -12.97756 -12.95768 -12.71542 -12.66433 -12.26960 -12.23162 -12.09722 -12.01445 -11.52988 -11.14370 -10.80893 -10.77755 -10.71026 -9.88781 -9.30610 -8.29771 -6.47287 1.43147 1.47861 1.56004 1.67678 1.97903 2.39024 2.60286 3.01936 3.04970 3.19640 3.71164 3.82905 3.91211 3.97123 4.05750 4.13949 4.20441 4.27791 4.29709 4.38876 4.45665 4.51291 4.60756 4.80417 4.88181 4.93538 5.02061 5.08059 5.20429 5.20829 5.44863 5.64366 5.75540 5.82019 6.07610 6.24068 6.26995 6.63090 6.87267 7.21955 7.45209 8.82534 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.002751 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.818317 B =10173.995102 C =10589.089297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 H 0.051 0.949 4 C 0.033 3.967 5 N -0.682 5.682 6 C 0.039 3.961 7 C 0.051 3.949 8 H 0.052 0.948 9 C 0.065 3.935 10 O -0.397 6.397 11 C 0.058 3.942 12 C 0.490 3.510 13 O -0.597 6.597 14 N -0.702 5.702 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.088 0.912 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.261 1.261 24 O -0.397 6.397 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.349 0.651 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.412 0.588 38 H -0.013 1.013 39 H -0.015 1.015 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 -9.430 -24.116 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 H 0.069 0.931 4 C -0.097 4.097 5 N -0.310 5.310 6 C -0.091 4.091 7 C -0.008 4.008 8 H 0.070 0.930 9 C -0.012 4.012 10 O -0.316 6.316 11 C -0.021 4.021 12 C 0.277 3.723 13 O -0.478 6.478 14 N -0.354 5.354 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.106 0.894 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.811 3.189 21 H -0.184 1.184 22 H -0.212 1.212 23 H -0.185 1.185 24 O -0.317 6.317 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.249 0.751 38 H 0.005 0.995 39 H 0.003 0.997 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.918 -9.021 -24.467 26.370 hybrid contribution -0.021 0.637 1.757 1.869 sum 3.897 -8.384 -22.711 24.521 Atomic orbital electron populations 1.21719 0.92060 1.03119 1.02922 1.23021 0.96879 0.95215 0.86808 0.93147 1.22721 0.87931 1.02021 0.97020 1.60962 1.07720 1.24777 1.37546 1.22604 1.02239 0.98581 0.85706 1.23004 0.82177 0.99601 0.96040 0.92962 1.22778 1.00712 0.94866 0.82824 1.88049 1.82632 1.47469 1.13456 1.22253 1.02657 0.95069 0.82120 1.21303 0.79133 0.86725 0.85130 1.90658 1.44563 1.26995 1.85543 1.46060 1.59469 1.24935 1.04929 1.18561 0.92831 0.89952 0.84300 1.21592 1.40219 1.07296 0.90309 0.89385 1.26128 0.94213 0.95362 1.04105 1.70144 1.40708 1.17602 1.28698 0.85156 0.79239 0.78209 0.76294 1.18433 1.21217 1.18549 1.88144 1.21170 1.78573 1.43845 0.91694 0.93697 0.88372 0.87564 0.90041 0.83318 0.87000 0.89399 0.88152 0.91175 0.86557 0.87405 0.75126 0.99526 0.99694 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 2 C 0.04 0.79 3.42 30.62 0.10 0.89 16 3 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.03 0.47 6.05 86.31 0.52 0.99 16 5 N -0.68 -9.48 6.93 -513.00 -3.55 -13.04 16 6 C 0.04 0.54 6.05 86.31 0.52 1.06 16 7 C 0.05 1.08 3.08 30.63 0.09 1.18 16 8 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 9 C 0.06 1.34 5.60 71.98 0.40 1.74 16 10 O -0.40 -12.90 9.84 -125.63 -1.24 -14.14 16 11 C 0.06 1.64 6.42 71.23 0.46 2.09 16 12 C 0.49 20.98 7.91 87.65 0.69 21.67 16 13 O -0.60 -33.00 16.50 16.02 0.26 -32.74 16 14 N -0.70 -30.22 5.55 -466.78 -2.59 -32.81 16 15 C 0.27 15.00 5.43 85.63 0.46 15.47 16 16 C -0.56 -30.45 9.28 25.60 0.24 -30.21 16 17 H 0.09 4.27 7.60 -2.91 -0.02 4.24 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 20 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 24 O -0.40 -10.73 10.08 -144.55 -1.46 -12.19 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.35 4.16 8.89 -89.70 -0.80 3.36 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.41 13.94 8.32 -92.71 -0.77 13.17 16 38 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 39 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -82.11 336.55 -2.14 -84.25 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.53 Total: 19.57 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 4.65 Total: 13.61 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -5.86 Total: -102.72 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -2.43 Total: -59.06 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -82.11 -2.14 -84.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132681775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.693 kcal (2) G-P(sol) polarization free energy of solvation -82.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds