Wall clock time and date at job start Mon Mar 30 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.50806 * 2 1 4 4 C 1.53092 * 109.50684 * 120.09150 * 2 1 3 5 5 N 1.47015 * 109.25997 * 63.08583 * 4 2 1 6 6 C 1.47016 * 110.75246 * 58.61107 * 5 4 2 7 7 C 1.53097 * 109.26082 * 301.38700 * 6 5 4 8 8 H 1.08996 * 109.50234 * 296.87329 * 7 6 5 9 9 C 1.52999 * 109.50735 * 176.78187 * 7 6 5 10 10 O 1.42891 * 109.47099 * 174.99664 * 9 7 6 11 11 C 1.42905 * 114.00095 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47103 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00005 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99618 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47323 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 O 1.43013 * 109.25708 * 56.84681 * 7 6 5 25 25 H 1.09005 * 109.46479 * 299.91069 * 1 2 3 26 26 H 1.08998 * 109.47110 * 59.90851 * 1 2 3 27 27 H 1.08997 * 109.47246 * 179.90989 * 1 2 3 28 28 H 1.08999 * 109.50858 * 303.14935 * 4 2 1 29 29 H 1.09007 * 109.54274 * 183.04000 * 4 2 1 30 30 H 1.00900 * 110.99718 * 294.83766 * 5 4 2 31 31 H 1.09005 * 109.50496 * 181.45257 * 6 5 4 32 32 H 1.09002 * 109.53886 * 61.34536 * 6 5 4 33 33 H 1.09000 * 109.46534 * 55.00003 * 9 7 6 34 34 H 1.09000 * 109.47178 * 295.00459 * 9 7 6 35 35 H 1.09001 * 109.46533 * 60.00387 * 11 10 9 36 36 H 1.08994 * 109.47045 * 300.00522 * 11 10 9 37 37 H 0.97000 * 120.00780 * 0.02562 * 14 12 11 38 38 H 1.09004 * 109.47134 * 59.99630 * 15 14 12 39 39 H 1.09010 * 109.47025 * 300.00064 * 15 14 12 40 40 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 1.6110 -2.1286 1.2051 6 6 2.1185 -2.7916 -0.0050 7 6 1.6064 -2.0473 -1.2410 8 1 0.5187 -2.1075 -1.2774 9 6 2.1959 -2.6839 -2.5013 10 8 1.6282 -2.0652 -3.6575 11 6 2.1145 -2.5890 -4.8950 12 6 1.4528 -1.8674 -6.0406 13 8 0.6448 -0.9906 -5.8192 14 7 1.7591 -2.1966 -7.3111 15 6 1.1163 -1.4947 -8.4249 16 6 1.6281 -2.0481 -9.7298 17 1 2.3594 -2.8428 -9.7296 18 6 1.1636 -1.5391 -10.9240 19 7 0.2734 -0.5710 -10.9244 20 14 1.7985 -2.2246 -12.5415 21 1 2.9974 -1.4585 -12.9671 22 1 2.1613 -3.6538 -12.3652 23 1 0.7418 -2.1063 -13.5782 24 8 2.0075 -0.6766 -1.1660 25 1 -0.3632 0.5125 0.8909 26 1 -0.3633 0.5152 -0.8891 27 1 -0.3633 -1.0276 -0.0016 28 1 1.6332 -0.2453 2.1390 29 1 3.1299 -0.6770 1.2769 30 1 0.6062 -2.2010 1.2627 31 1 1.7667 -3.8231 -0.0296 32 1 3.2084 -2.7787 0.0021 33 1 1.9678 -3.7497 -2.5106 34 1 3.2768 -2.5436 -2.5077 35 1 1.8851 -3.6530 -4.9542 36 1 3.1936 -2.4463 -4.9508 37 1 2.4051 -2.8981 -7.4883 38 1 1.3468 -0.4310 -8.3655 39 1 0.0369 -1.6363 -8.3690 40 1 -0.0566 -0.2154 -10.0844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132681994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:48 Heat of formation + Delta-G solvation = -132.558370 kcal Electronic energy + Delta-G solvation = -20913.599943 eV Core-core repulsion = 17535.266139 eV Total energy + Delta-G solvation = -3378.333804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36371 -39.06191 -37.29917 -34.78758 -34.40550 -33.18497 -32.45370 -29.86217 -28.45627 -26.75065 -25.73390 -24.37490 -22.70437 -22.59847 -20.27404 -19.86166 -17.61732 -17.07063 -17.01415 -16.72929 -16.20689 -15.80024 -15.50649 -15.20662 -14.87307 -14.43439 -14.17099 -13.80703 -13.51054 -13.31973 -12.84173 -12.49363 -12.30581 -12.27962 -12.21304 -12.10138 -11.68431 -11.55224 -11.36525 -11.22436 -11.03263 -10.77701 -10.25495 -10.18640 -9.72002 -9.17524 -8.80113 -8.69882 -8.62669 -8.02935 -6.52827 -4.26594 3.16911 3.23529 3.36904 3.40266 3.40833 3.55954 3.76480 4.20563 4.39485 4.45261 4.57666 4.68517 4.74473 4.84536 4.95565 5.00430 5.03880 5.12579 5.19374 5.25973 5.27458 5.33301 5.39700 5.41509 5.50888 5.59419 5.67983 5.87336 6.38522 6.81545 6.89856 6.96345 7.08215 7.20714 7.30222 7.63878 8.25590 8.43349 8.69490 8.95455 9.47363 10.87468 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.050306 B = 0.002774 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.465545 B =10091.580790 C =10458.966438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 H 0.108 0.892 4 C 0.025 3.975 5 N -0.679 5.679 6 C 0.029 3.971 7 C 0.053 3.947 8 H 0.071 0.929 9 C 0.070 3.930 10 O -0.353 6.353 11 C 0.045 3.955 12 C 0.499 3.501 13 O -0.536 6.536 14 N -0.707 5.707 15 C 0.241 3.759 16 C -0.624 4.624 17 H 0.058 0.942 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 1.080 2.920 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.282 1.282 24 O -0.358 6.358 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.342 0.658 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.393 0.607 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -5.708 23.763 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.014 4.014 3 H 0.126 0.874 4 C -0.105 4.105 5 N -0.308 5.308 6 C -0.101 4.101 7 C -0.007 4.007 8 H 0.088 0.912 9 C -0.008 4.008 10 O -0.271 6.271 11 C -0.036 4.036 12 C 0.282 3.718 13 O -0.413 6.413 14 N -0.358 5.358 15 C 0.120 3.880 16 C -0.662 4.662 17 H 0.076 0.924 18 C -0.184 4.184 19 N -0.537 5.537 20 Si 0.907 3.093 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.208 1.208 24 O -0.277 6.277 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.161 0.839 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.226 0.774 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.800 -4.903 22.559 23.579 hybrid contribution -0.080 -0.400 1.066 1.141 sum 4.720 -5.302 23.625 24.669 Atomic orbital electron populations 1.22401 0.96097 1.02456 1.03420 1.22905 0.94134 0.97684 0.86647 0.87448 1.22705 1.01942 0.88286 0.97544 1.60917 1.17476 1.14614 1.37814 1.22618 1.01871 0.98312 0.87316 1.22805 0.99640 0.83732 0.94534 0.91157 1.22456 0.97866 0.95704 0.84748 1.88093 1.65879 1.61173 1.11934 1.22281 0.98638 0.97746 0.84892 1.20134 0.83332 0.84266 0.84028 1.90685 1.34314 1.31616 1.84652 1.46181 1.44691 1.39551 1.05341 1.19187 0.93098 0.92446 0.83271 1.22080 1.28974 1.23707 0.91426 0.92378 1.25902 0.94734 0.94987 1.02773 1.70726 1.27437 1.24350 1.31145 0.83397 0.76076 0.75285 0.74559 1.21248 1.21363 1.20768 1.88241 1.74940 1.22241 1.42244 0.91339 0.90927 0.92559 0.89530 0.89817 0.83926 0.89310 0.89593 0.91657 0.92301 0.90769 0.90671 0.77411 0.96449 0.96465 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 8.75 37.16 0.33 -1.32 16 2 C 0.05 0.43 3.92 -26.68 -0.10 0.33 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.03 0.19 6.23 -3.71 -0.02 0.17 16 5 N -0.68 -5.27 6.85 -113.49 -0.78 -6.05 16 6 C 0.03 0.23 6.05 -3.71 -0.02 0.21 16 7 C 0.05 0.57 2.68 -26.68 -0.07 0.50 16 8 H 0.07 0.81 6.49 -51.93 -0.34 0.47 16 9 C 0.07 0.79 5.60 37.16 0.21 1.00 16 10 O -0.35 -5.85 9.84 -59.61 -0.59 -6.43 16 11 C 0.04 0.68 6.42 36.01 0.23 0.91 16 12 C 0.50 10.54 7.91 -10.99 -0.09 10.46 16 13 O -0.54 -13.96 16.50 -14.35 -0.24 -14.20 16 14 N -0.71 -15.27 5.55 -61.47 -0.34 -15.62 16 15 C 0.24 6.49 4.74 -5.20 -0.02 6.46 16 16 C -0.62 -17.26 9.28 -34.44 -0.32 -17.58 16 17 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 18 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 19 N -0.90 -27.57 13.65 55.43 0.76 -26.82 16 20 Si 1.08 24.50 29.90 -169.99 -5.08 19.42 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 O -0.36 -4.69 10.25 -39.73 -0.41 -5.10 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.48 5.28 -51.93 -0.27 0.21 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.34 2.34 7.35 -39.29 -0.29 2.05 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 38 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 39 H 0.02 0.51 8.01 -51.92 -0.42 0.09 16 40 H 0.27 8.48 7.22 -40.82 -0.29 8.18 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -35.84 328.74 -7.92 -43.76 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.21 Total: 4.42 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.01 Total: 1.65 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.36 Total: -48.48 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.23 Total: -25.73 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.84 -7.92 -43.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132681994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.795 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds