Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.50806 * 2 1 4 4 C 1.53092 * 109.50684 * 120.09150 * 2 1 3 5 5 N 1.47015 * 109.25997 * 63.08583 * 4 2 1 6 6 C 1.47016 * 110.75246 * 58.61107 * 5 4 2 7 7 C 1.53097 * 109.26082 * 301.38700 * 6 5 4 8 8 H 1.08996 * 109.50234 * 296.87329 * 7 6 5 9 9 C 1.52999 * 109.50735 * 176.78187 * 7 6 5 10 10 O 1.42891 * 109.47099 * 174.99664 * 9 7 6 11 11 C 1.42905 * 114.00095 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47103 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00005 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99618 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47323 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 O 1.43013 * 109.25708 * 56.84681 * 7 6 5 25 25 H 1.09005 * 109.46479 * 299.91069 * 1 2 3 26 26 H 1.08998 * 109.47110 * 59.90851 * 1 2 3 27 27 H 1.08997 * 109.47246 * 179.90989 * 1 2 3 28 28 H 1.08999 * 109.50858 * 303.14935 * 4 2 1 29 29 H 1.09007 * 109.54274 * 183.04000 * 4 2 1 30 30 H 1.00900 * 110.99718 * 294.83766 * 5 4 2 31 31 H 1.09005 * 109.50496 * 181.45257 * 6 5 4 32 32 H 1.09002 * 109.53886 * 61.34536 * 6 5 4 33 33 H 1.09000 * 109.46534 * 55.00003 * 9 7 6 34 34 H 1.09000 * 109.47178 * 295.00459 * 9 7 6 35 35 H 1.09001 * 109.46533 * 60.00387 * 11 10 9 36 36 H 1.08994 * 109.47045 * 300.00522 * 11 10 9 37 37 H 0.97000 * 120.00780 * 0.02562 * 14 12 11 38 38 H 1.09004 * 109.47134 * 59.99630 * 15 14 12 39 39 H 1.09010 * 109.47025 * 300.00064 * 15 14 12 40 40 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 1.6110 -2.1286 1.2051 6 6 2.1185 -2.7916 -0.0050 7 6 1.6064 -2.0473 -1.2410 8 1 0.5187 -2.1075 -1.2774 9 6 2.1959 -2.6839 -2.5013 10 8 1.6282 -2.0652 -3.6575 11 6 2.1145 -2.5890 -4.8950 12 6 1.4528 -1.8674 -6.0406 13 8 0.6448 -0.9906 -5.8192 14 7 1.7591 -2.1966 -7.3111 15 6 1.1163 -1.4947 -8.4249 16 6 1.6281 -2.0481 -9.7298 17 1 2.3594 -2.8428 -9.7296 18 6 1.1636 -1.5391 -10.9240 19 7 0.2734 -0.5710 -10.9244 20 14 1.7985 -2.2246 -12.5415 21 1 2.9974 -1.4585 -12.9671 22 1 2.1613 -3.6538 -12.3652 23 1 0.7418 -2.1063 -13.5782 24 8 2.0075 -0.6766 -1.1660 25 1 -0.3632 0.5125 0.8909 26 1 -0.3633 0.5152 -0.8891 27 1 -0.3633 -1.0276 -0.0016 28 1 1.6332 -0.2453 2.1390 29 1 3.1299 -0.6770 1.2769 30 1 0.6062 -2.2010 1.2627 31 1 1.7667 -3.8231 -0.0296 32 1 3.2084 -2.7787 0.0021 33 1 1.9678 -3.7497 -2.5106 34 1 3.2768 -2.5436 -2.5077 35 1 1.8851 -3.6530 -4.9542 36 1 3.1936 -2.4463 -4.9508 37 1 2.4051 -2.8981 -7.4883 38 1 1.3468 -0.4310 -8.3655 39 1 0.0369 -1.6363 -8.3690 40 1 -0.0566 -0.2154 -10.0844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132681994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = -162.375579 kcal Electronic energy + Delta-G solvation = -20914.892914 eV Core-core repulsion = 17535.266139 eV Total energy + Delta-G solvation = -3379.626776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14776 -40.69356 -38.53391 -36.45021 -35.50818 -34.52466 -33.95360 -30.85345 -29.86467 -28.01440 -27.02444 -25.15767 -24.64782 -23.48870 -21.69635 -20.93401 -19.52125 -18.25753 -17.88104 -17.72975 -17.47844 -16.99718 -16.66291 -16.43508 -15.76524 -15.69829 -15.57861 -15.45383 -14.86168 -14.44870 -14.35804 -14.06217 -13.86391 -13.25875 -13.13199 -13.10887 -12.94929 -12.73857 -12.56427 -12.24530 -12.19619 -11.90379 -11.88821 -11.06794 -11.05951 -10.83566 -10.79638 -10.74293 -10.04231 -9.30356 -8.82106 -6.57966 1.55458 1.55678 1.65465 1.81949 1.89129 2.54681 2.65977 2.94750 3.06413 3.19273 3.68876 3.75546 3.87622 3.92930 4.04144 4.11002 4.13581 4.21207 4.23500 4.34446 4.42694 4.44318 4.60904 4.69908 4.74325 4.85972 4.90324 4.90749 4.98156 5.14095 5.36253 5.50045 5.77293 5.99257 6.07311 6.21113 6.27032 6.28913 6.73268 7.19728 7.36070 8.57257 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.050306 B = 0.002774 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.465545 B =10091.580790 C =10458.966438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.038 3.962 3 H 0.107 0.893 4 C 0.033 3.967 5 N -0.680 5.680 6 C 0.038 3.962 7 C 0.049 3.951 8 H 0.057 0.943 9 C 0.064 3.936 10 O -0.396 6.396 11 C 0.059 3.941 12 C 0.491 3.509 13 O -0.595 6.595 14 N -0.699 5.699 15 C 0.252 3.748 16 C -0.628 4.628 17 H 0.081 0.919 18 C -0.035 4.035 19 N -0.931 5.931 20 Si 1.134 2.866 21 H -0.271 1.271 22 H -0.258 1.258 23 H -0.286 1.286 24 O -0.395 6.395 25 H 0.092 0.908 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.348 0.652 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.413 0.587 38 H -0.019 1.019 39 H -0.017 1.017 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 -8.321 24.759 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.125 0.875 4 C -0.097 4.097 5 N -0.309 5.309 6 C -0.092 4.092 7 C -0.011 4.011 8 H 0.075 0.925 9 C -0.013 4.013 10 O -0.315 6.315 11 C -0.020 4.020 12 C 0.278 3.722 13 O -0.476 6.476 14 N -0.350 5.350 15 C 0.129 3.871 16 C -0.666 4.666 17 H 0.099 0.901 18 C -0.233 4.233 19 N -0.567 5.567 20 Si 0.953 3.047 21 H -0.196 1.196 22 H -0.182 1.182 23 H -0.211 1.211 24 O -0.315 6.315 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.167 0.833 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.250 0.750 38 H -0.001 1.001 39 H 0.001 0.999 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.771 -7.562 23.610 25.699 hybrid contribution -0.704 0.451 0.860 1.200 sum 6.067 -7.110 24.470 26.195 Atomic orbital electron populations 1.22362 0.95911 1.02528 1.03123 1.23102 0.94341 0.97877 0.86761 0.87470 1.22666 1.01802 0.88147 0.97066 1.60956 1.17985 1.14544 1.37389 1.22602 1.01902 0.98878 0.85822 1.22968 0.98983 0.83313 0.95817 0.92547 1.22799 0.98348 0.97274 0.82875 1.88046 1.67176 1.62892 1.13385 1.22231 0.99264 0.98423 0.82116 1.21357 0.82294 0.83461 0.85060 1.90657 1.37038 1.34380 1.85518 1.45910 1.44792 1.39660 1.04688 1.18703 0.91626 0.91173 0.85577 1.22448 1.28874 1.23811 0.91449 0.90140 1.27732 0.93936 0.94290 1.07341 1.70879 1.29527 1.26344 1.29944 0.82743 0.75813 0.76356 0.69768 1.19602 1.18157 1.21142 1.88180 1.75536 1.23706 1.44065 0.88951 0.93818 0.92303 0.87529 0.90063 0.83308 0.87197 0.89409 0.88257 0.91179 0.86531 0.87345 0.74997 1.00084 0.99903 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.75 71.98 0.63 -2.58 16 2 C 0.04 0.71 3.92 30.63 0.12 0.83 16 3 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.03 0.44 6.23 86.31 0.54 0.98 16 5 N -0.68 -9.05 6.85 -512.98 -3.51 -12.56 16 6 C 0.04 0.52 6.05 86.31 0.52 1.04 16 7 C 0.05 1.00 2.68 30.63 0.08 1.08 16 8 H 0.06 1.28 6.49 -2.39 -0.02 1.27 16 9 C 0.06 1.30 5.60 71.98 0.40 1.70 16 10 O -0.40 -12.68 9.84 -125.67 -1.24 -13.92 16 11 C 0.06 1.64 6.42 71.24 0.46 2.10 16 12 C 0.49 20.83 7.91 87.66 0.69 21.52 16 13 O -0.60 -32.42 16.50 16.01 0.26 -32.16 16 14 N -0.70 -30.08 5.55 -466.78 -2.59 -32.67 16 15 C 0.25 14.09 4.74 85.63 0.41 14.49 16 16 C -0.63 -34.70 9.28 25.60 0.24 -34.46 16 17 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 18 C -0.03 -1.97 5.46 84.65 0.46 -1.51 16 19 N -0.93 -58.61 13.65 21.45 0.29 -58.31 16 20 Si 1.13 48.01 29.90 68.60 2.05 50.06 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 23 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 24 O -0.40 -10.36 10.25 -144.68 -1.48 -11.85 16 25 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.99 5.28 -2.39 -0.01 0.97 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.35 4.03 7.35 -89.69 -0.66 3.37 16 31 H 0.11 1.02 8.14 -2.38 -0.02 1.01 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 38 H -0.02 -1.16 8.01 -2.38 -0.02 -1.18 16 39 H -0.02 -1.05 8.01 -2.38 -0.02 -1.06 16 40 H 0.25 16.62 7.22 -92.71 -0.67 15.95 16 Total: -1.00 -82.58 328.74 -1.95 -84.53 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.28 Total: 21.69 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.55 Total: 5.18 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -5.81 Total: -103.54 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -2.46 Total: -57.92 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.05 Total: 50.06 kcal Total: -82.58 -1.95 -84.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132681994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.844 kcal (2) G-P(sol) polarization free energy of solvation -82.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds