Wall clock time and date at job start Mon Mar 30 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.46969 * 2 1 4 4 C 1.81401 * 102.99570 * 180.02562 * 3 2 1 5 5 C 1.53011 * 109.46808 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46866 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46925 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99894 * 179.97438 * 7 6 5 9 9 C 1.53076 * 109.43865 * 84.80064 * 8 7 6 10 10 C 1.53183 * 109.29478 * 181.23539 * 9 8 7 11 11 N 1.46930 * 108.89468 * 305.57480 * 10 9 8 12 12 C 1.36937 * 120.63259 * 233.51494 * 11 10 9 13 13 H 1.08000 * 119.99761 * 151.83401 * 12 11 10 14 14 C 1.38806 * 120.00219 * 331.83653 * 12 11 10 15 15 N 1.31624 * 120.00191 * 343.07619 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 163.07294 * 14 12 11 17 17 H 1.48506 * 109.46812 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47258 * 119.99807 * 16 14 12 19 19 H 1.48499 * 109.47344 * 240.00342 * 16 14 12 20 20 C 1.46925 * 118.73328 * 53.53726 * 11 10 9 21 21 C 1.53033 * 109.45935 * 205.00032 * 8 7 6 22 22 H 1.08999 * 109.47359 * 59.99496 * 1 2 3 23 23 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46821 * 299.99806 * 1 2 3 25 25 H 1.09000 * 109.46577 * 240.00626 * 2 1 3 26 26 H 1.08999 * 109.47359 * 120.00504 * 2 1 3 27 27 H 1.09000 * 109.47256 * 60.00874 * 4 3 2 28 28 H 1.08994 * 109.47311 * 300.00120 * 4 3 2 29 29 H 1.09000 * 109.46478 * 60.00423 * 5 4 3 30 30 H 1.08994 * 109.47303 * 300.00149 * 5 4 3 31 31 H 1.09001 * 109.46761 * 60.00584 * 6 5 4 32 32 H 1.09001 * 109.47562 * 300.00489 * 6 5 4 33 33 H 1.00899 * 111.00349 * 303.95864 * 7 6 5 34 34 H 1.08994 * 109.45953 * 324.98041 * 8 7 6 35 35 H 1.09005 * 109.39190 * 61.35446 * 9 8 7 36 36 H 1.09004 * 109.62337 * 301.25239 * 9 8 7 37 37 H 1.09005 * 109.58619 * 185.72200 * 10 9 8 38 38 H 1.08998 * 109.58733 * 65.43770 * 10 9 8 39 39 H 0.96995 * 120.00379 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.58688 * 66.18006 * 20 11 10 41 41 H 1.08996 * 109.58570 * 186.45714 * 20 11 10 42 42 H 1.09003 * 109.49897 * 58.68153 * 21 8 7 43 43 H 1.09000 * 109.52987 * 298.59806 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5057 -0.0008 5 6 4.6065 2.8817 -0.0015 6 6 6.1267 2.7092 -0.0015 7 7 6.7694 4.0301 -0.0028 8 6 8.2329 3.9036 -0.0023 9 6 8.7296 3.7277 -1.4395 10 6 10.2527 3.5651 -1.4324 11 7 10.8494 4.7032 -0.7199 12 6 11.8268 5.4602 -1.3088 13 1 11.9444 6.4983 -1.0348 14 6 12.6664 4.8935 -2.2577 15 7 12.7587 3.5842 -2.3569 16 14 13.6654 5.9888 -3.3942 17 1 13.3850 7.4133 -3.0814 18 1 15.1120 5.7155 -3.1998 19 1 13.2938 5.7088 -4.8044 20 6 10.3776 5.0133 0.6366 21 6 8.8533 5.1632 0.6063 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.2398 0.9545 -0.8911 28 1 4.2406 0.9541 0.8889 29 1 4.3038 3.4333 0.8885 30 1 4.3029 3.4329 -0.8914 31 1 6.4297 2.1573 -0.8913 32 1 6.4299 2.1580 0.8886 33 1 6.4543 4.5848 -0.7846 34 1 8.5220 3.0344 0.5885 35 1 8.4602 4.6064 -2.0256 36 1 8.2712 2.8419 -1.8794 37 1 10.6225 3.5414 -2.4575 38 1 10.5188 2.6371 -0.9264 39 1 13.3456 3.1882 -3.0198 40 1 10.6517 4.2035 1.3128 41 1 10.8317 5.9436 0.9776 42 1 8.4808 5.2981 1.6217 43 1 8.5850 6.0299 0.0022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134760173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:31 Heat of formation + Delta-G solvation = -2.671479 kcal Electronic energy + Delta-G solvation = -18724.198624 eV Core-core repulsion = 15930.083103 eV Total energy + Delta-G solvation = -2794.115521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.21292 -35.86241 -33.53006 -33.14311 -31.64492 -29.84465 -29.18338 -25.90325 -24.33722 -23.55205 -22.12491 -21.43434 -21.28609 -19.14737 -16.85142 -16.49025 -15.88880 -15.28643 -15.02856 -15.00357 -14.54714 -14.28244 -13.65605 -13.56078 -13.32259 -13.12808 -12.89026 -12.47351 -12.45379 -12.18437 -11.85933 -11.76360 -11.43731 -11.15476 -11.04095 -10.87828 -10.71157 -10.63007 -10.39506 -10.21256 -10.12677 -10.00158 -9.66786 -9.48513 -8.49234 -8.04427 -7.93897 -6.65236 -5.77980 -3.20195 1.36149 2.32629 3.37216 3.45136 3.47671 4.27763 4.50665 4.53327 4.58792 4.67393 4.95455 5.00754 5.09699 5.26345 5.31906 5.34681 5.39646 5.41453 5.46268 5.60041 5.64841 5.68235 5.71169 5.92546 6.02171 6.06104 6.17577 6.34990 6.49543 6.57348 6.63112 6.69277 6.84973 7.03175 7.34286 7.37735 7.60876 7.68558 7.81081 8.46585 9.22666 9.86472 10.43494 11.30595 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.043927 B = 0.002677 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.267353 B =10458.445164 C =10757.498099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.268 6.268 4 C -0.080 4.080 5 C -0.101 4.101 6 C 0.065 3.935 7 N -0.689 5.689 8 C 0.095 3.905 9 C -0.167 4.167 10 C 0.175 3.825 11 N -0.593 5.593 12 C -0.249 4.249 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.144 3.856 21 C -0.117 4.117 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.337 0.663 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.016 0.984 39 H 0.252 0.748 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.335 -6.447 4.516 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.042 6.042 4 C -0.229 4.229 5 C -0.140 4.140 6 C -0.067 4.067 7 N -0.319 5.319 8 C -0.014 4.014 9 C -0.208 4.208 10 C 0.048 3.952 11 N -0.316 5.316 12 C -0.379 4.379 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.216 1.216 20 C 0.017 3.983 21 C -0.157 4.157 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.873 -5.540 5.106 22.191 hybrid contribution 1.449 -1.084 -1.619 2.428 sum -19.423 -6.624 3.487 20.816 Atomic orbital electron populations 1.21512 0.92262 1.02471 1.03236 1.23295 1.00208 0.95563 1.04834 1.86976 1.06394 1.12707 1.98127 1.23344 0.92594 1.02049 1.04952 1.21296 0.94620 0.94221 1.03815 1.21894 0.92389 0.91778 1.00623 1.60698 1.07172 1.14278 1.49714 1.21510 0.84931 0.98727 0.96205 1.22856 1.01676 0.99947 0.96310 1.20677 0.86343 0.88929 0.99227 1.44073 1.42196 1.34274 1.11030 1.19245 1.07608 0.92011 1.19020 0.91628 1.25058 0.97569 0.95473 1.01769 1.70043 1.40125 1.08726 1.36022 0.86229 0.79624 0.80156 0.80819 1.20224 1.21746 1.21615 1.20933 0.91231 0.98264 0.87838 1.21972 0.97444 0.96780 0.99491 0.91678 0.91172 0.91664 0.90189 0.90171 0.90147 0.89987 0.90192 0.91200 0.95169 0.91179 0.84500 0.91423 0.92593 0.93791 0.89607 0.96597 0.93753 0.96617 0.92682 0.92596 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.92 37.16 0.37 -0.46 16 2 C -0.09 -0.66 6.66 37.16 0.25 -0.41 16 3 S -0.27 -2.65 21.74 -107.50 -2.34 -4.99 16 4 C -0.08 -0.75 5.94 37.16 0.22 -0.53 16 5 C -0.10 -1.05 5.48 -26.72 -0.15 -1.19 16 6 C 0.06 0.78 5.48 -3.82 -0.02 0.76 16 7 N -0.69 -9.80 6.25 -106.66 -0.67 -10.47 16 8 C 0.10 1.62 2.43 -67.66 -0.16 1.46 16 9 C -0.17 -3.18 5.34 -26.60 -0.14 -3.32 16 10 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 11 N -0.59 -15.03 3.00 -172.33 -0.52 -15.54 16 12 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 13 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 14 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 15 N -0.90 -26.48 11.20 55.49 0.62 -25.86 16 16 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.14 3.08 6.52 -3.71 -0.02 3.05 16 21 C -0.12 -2.11 5.69 -26.62 -0.15 -2.26 16 22 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 26 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.38 7.41 -51.93 -0.38 -0.01 16 32 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.34 4.67 8.48 -39.29 -0.33 4.33 16 34 H 0.07 1.20 7.80 -51.93 -0.40 0.79 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.77 7.42 -51.93 -0.39 0.38 16 37 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -29.27 349.68 -10.84 -40.11 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.12 Total: 0.54 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.06 Total: -5.88 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.56 Total: -51.87 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.34 Total: -4.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.27 -10.84 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134760173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.442 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds