Wall clock time and date at job start Mon Mar 30 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.46969 * 2 1 4 4 C 1.81401 * 102.99570 * 180.02562 * 3 2 1 5 5 C 1.53011 * 109.46808 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46866 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46925 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99894 * 179.97438 * 7 6 5 9 9 C 1.53076 * 109.43865 * 84.80064 * 8 7 6 10 10 C 1.53183 * 109.29478 * 181.23539 * 9 8 7 11 11 N 1.46930 * 108.89468 * 305.57480 * 10 9 8 12 12 C 1.36937 * 120.63259 * 233.51494 * 11 10 9 13 13 H 1.08000 * 119.99761 * 151.83401 * 12 11 10 14 14 C 1.38806 * 120.00219 * 331.83653 * 12 11 10 15 15 N 1.31624 * 120.00191 * 343.07619 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 163.07294 * 14 12 11 17 17 H 1.48506 * 109.46812 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47258 * 119.99807 * 16 14 12 19 19 H 1.48499 * 109.47344 * 240.00342 * 16 14 12 20 20 C 1.46925 * 118.73328 * 53.53726 * 11 10 9 21 21 C 1.53033 * 109.45935 * 205.00032 * 8 7 6 22 22 H 1.08999 * 109.47359 * 59.99496 * 1 2 3 23 23 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46821 * 299.99806 * 1 2 3 25 25 H 1.09000 * 109.46577 * 240.00626 * 2 1 3 26 26 H 1.08999 * 109.47359 * 120.00504 * 2 1 3 27 27 H 1.09000 * 109.47256 * 60.00874 * 4 3 2 28 28 H 1.08994 * 109.47311 * 300.00120 * 4 3 2 29 29 H 1.09000 * 109.46478 * 60.00423 * 5 4 3 30 30 H 1.08994 * 109.47303 * 300.00149 * 5 4 3 31 31 H 1.09001 * 109.46761 * 60.00584 * 6 5 4 32 32 H 1.09001 * 109.47562 * 300.00489 * 6 5 4 33 33 H 1.00899 * 111.00349 * 303.95864 * 7 6 5 34 34 H 1.08994 * 109.45953 * 324.98041 * 8 7 6 35 35 H 1.09005 * 109.39190 * 61.35446 * 9 8 7 36 36 H 1.09004 * 109.62337 * 301.25239 * 9 8 7 37 37 H 1.09005 * 109.58619 * 185.72200 * 10 9 8 38 38 H 1.08998 * 109.58733 * 65.43770 * 10 9 8 39 39 H 0.96995 * 120.00379 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.58688 * 66.18006 * 20 11 10 41 41 H 1.08996 * 109.58570 * 186.45714 * 20 11 10 42 42 H 1.09003 * 109.49897 * 58.68153 * 21 8 7 43 43 H 1.09000 * 109.52987 * 298.59806 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5057 -0.0008 5 6 4.6065 2.8817 -0.0015 6 6 6.1267 2.7092 -0.0015 7 7 6.7694 4.0301 -0.0028 8 6 8.2329 3.9036 -0.0023 9 6 8.7296 3.7277 -1.4395 10 6 10.2527 3.5651 -1.4324 11 7 10.8494 4.7032 -0.7199 12 6 11.8268 5.4602 -1.3088 13 1 11.9444 6.4983 -1.0348 14 6 12.6664 4.8935 -2.2577 15 7 12.7587 3.5842 -2.3569 16 14 13.6654 5.9888 -3.3942 17 1 13.3850 7.4133 -3.0814 18 1 15.1120 5.7155 -3.1998 19 1 13.2938 5.7088 -4.8044 20 6 10.3776 5.0133 0.6366 21 6 8.8533 5.1632 0.6063 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.2398 0.9545 -0.8911 28 1 4.2406 0.9541 0.8889 29 1 4.3038 3.4333 0.8885 30 1 4.3029 3.4329 -0.8914 31 1 6.4297 2.1573 -0.8913 32 1 6.4299 2.1580 0.8886 33 1 6.4543 4.5848 -0.7846 34 1 8.5220 3.0344 0.5885 35 1 8.4602 4.6064 -2.0256 36 1 8.2712 2.8419 -1.8794 37 1 10.6225 3.5414 -2.4575 38 1 10.5188 2.6371 -0.9264 39 1 13.3456 3.1882 -3.0198 40 1 10.6517 4.2035 1.3128 41 1 10.8317 5.9436 0.9776 42 1 8.4808 5.2981 1.6217 43 1 8.5850 6.0299 0.0022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134760173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:30 Heat of formation + Delta-G solvation = -19.179542 kcal Electronic energy + Delta-G solvation = -18724.914467 eV Core-core repulsion = 15930.083103 eV Total energy + Delta-G solvation = -2794.831364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72026 -37.23490 -34.99620 -33.65702 -33.29731 -31.54034 -30.77150 -27.29467 -25.76176 -24.33871 -23.77983 -22.91524 -22.35908 -20.77019 -18.78634 -17.25693 -16.92177 -16.79860 -16.18023 -16.04221 -15.64463 -15.39956 -15.30421 -15.03434 -14.78600 -14.56808 -14.04118 -13.72773 -13.55653 -13.19768 -13.04322 -12.91428 -12.70287 -12.60656 -12.42682 -12.34473 -12.17418 -11.97543 -11.90749 -11.79203 -11.73752 -11.37276 -11.10636 -10.89764 -10.58055 -9.30194 -8.69517 -8.68832 -7.88892 -5.34564 0.68596 1.44729 1.46497 1.57426 1.65968 2.50037 3.14953 3.28112 3.68839 3.88282 3.96612 4.02511 4.05313 4.10781 4.16578 4.26021 4.37618 4.46797 4.51866 4.55399 4.65336 4.69721 4.71149 4.86064 4.86607 4.90709 4.93250 5.01050 5.10838 5.21403 5.22112 5.25855 5.26335 5.37500 5.49237 5.63166 5.70314 6.12438 6.38190 6.49075 7.13539 7.85057 8.36840 9.17466 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.043927 B = 0.002677 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.267353 B =10458.445164 C =10757.498099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 S -0.313 6.313 4 C -0.071 4.071 5 C -0.089 4.089 6 C 0.066 3.934 7 N -0.683 5.683 8 C 0.107 3.893 9 C -0.151 4.151 10 C 0.181 3.819 11 N -0.611 5.611 12 C -0.261 4.261 13 H 0.066 0.934 14 C -0.054 4.054 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.290 1.290 20 C 0.140 3.860 21 C -0.104 4.104 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.342 0.658 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.050 0.950 38 H -0.006 1.006 39 H 0.250 0.750 40 H 0.013 0.987 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 -6.448 4.851 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.230 4.230 3 S -0.088 6.088 4 C -0.220 4.220 5 C -0.128 4.128 6 C -0.065 4.065 7 N -0.313 5.313 8 C -0.003 4.003 9 C -0.192 4.192 10 C 0.054 3.946 11 N -0.335 5.335 12 C -0.391 4.391 13 H 0.084 0.916 14 C -0.249 4.249 15 N -0.583 5.583 16 Si 0.796 3.204 17 H -0.190 1.190 18 H -0.219 1.219 19 H -0.216 1.216 20 C 0.014 3.986 21 C -0.144 4.144 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.012 0.988 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.433 -5.528 5.462 23.741 hybrid contribution 1.889 -1.127 -1.669 2.761 sum -20.544 -6.655 3.793 21.926 Atomic orbital electron populations 1.21530 0.91452 1.03561 1.02794 1.23370 1.00776 0.93207 1.05600 1.87130 1.07451 1.15939 1.98236 1.23256 0.91776 1.01327 1.05616 1.21149 0.93361 0.94915 1.03393 1.21932 0.93249 0.90554 1.00731 1.60644 1.05116 1.15595 1.49944 1.21281 0.86695 0.98042 0.94306 1.22651 0.97836 1.00498 0.98186 1.20486 0.89500 0.87857 0.96735 1.44346 1.42199 1.34224 1.12731 1.19562 1.07924 0.92395 1.19216 0.91590 1.25828 0.99054 0.96690 1.03316 1.70193 1.41102 1.10319 1.36673 0.85203 0.77777 0.78927 0.78533 1.19048 1.21871 1.21644 1.21088 0.93642 0.98032 0.85848 1.21800 0.94711 0.97029 1.00862 0.92179 0.89216 0.92066 0.89471 0.89297 0.89586 0.89183 0.90777 0.91452 0.95195 0.90896 0.83958 0.91763 0.93008 0.92127 0.93107 0.98757 0.94135 0.96882 0.92655 0.90333 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.92 71.98 0.71 -0.69 16 2 C -0.08 -1.03 6.66 71.98 0.48 -0.55 16 3 S -0.31 -5.79 21.74 -56.49 -1.23 -7.02 16 4 C -0.07 -1.18 5.94 71.99 0.43 -0.75 16 5 C -0.09 -1.69 5.48 30.60 0.17 -1.52 16 6 C 0.07 1.45 5.48 86.30 0.47 1.92 16 7 N -0.68 -17.84 6.25 -491.38 -3.07 -20.91 16 8 C 0.11 3.44 2.43 44.95 0.11 3.55 16 9 C -0.15 -5.63 5.34 30.68 0.16 -5.46 16 10 C 0.18 8.84 5.30 86.36 0.46 9.30 16 11 N -0.61 -31.27 3.00 -699.11 -2.09 -33.37 16 12 C -0.26 -14.59 9.58 84.03 0.81 -13.79 16 13 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 14 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 15 N -0.94 -56.15 11.20 21.65 0.24 -55.91 16 16 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 C 0.14 5.89 6.52 86.36 0.56 6.46 16 21 C -0.10 -3.57 5.69 30.67 0.17 -3.40 16 22 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 0.67 7.41 -2.39 -0.02 0.66 16 32 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 33 H 0.34 8.64 8.48 -89.69 -0.76 7.88 16 34 H 0.06 2.16 7.80 -2.39 -0.02 2.14 16 35 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.06 2.04 7.42 -2.38 -0.02 2.03 16 37 H 0.05 2.83 6.06 -2.38 -0.01 2.81 16 38 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.04 349.68 1.02 -62.02 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.19 Total: 15.33 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.95 Total: -7.56 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.92 Total: -110.18 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.23 Total: -7.02 kcal Total: -63.04 1.02 -62.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134760173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.840 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds