Wall clock time and date at job start Mon Mar 30 2020 04:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99793 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.54812 * 65.00120 * 16 15 14 18 18 C 1.53185 * 109.54562 * 304.82222 * 16 15 14 19 19 C 1.53099 * 109.15916 * 183.24616 * 18 16 15 20 20 O 1.42898 * 109.49288 * 57.47249 * 19 18 16 21 21 C 1.42910 * 114.09849 * 298.89398 * 20 19 18 22 22 C 1.53093 * 109.41619 * 61.14913 * 21 20 19 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 25 25 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 26 26 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 28 28 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 29 29 H 1.00898 * 110.99877 * 56.04636 * 14 13 11 30 30 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 31 31 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 32 32 H 0.96699 * 113.99250 * 300.00070 * 17 16 15 33 33 H 1.09005 * 109.51840 * 303.06103 * 18 16 15 34 34 H 1.08997 * 109.51837 * 63.24603 * 18 16 15 35 35 H 1.09007 * 109.40375 * 297.49152 * 19 18 16 36 36 H 1.09003 * 109.49122 * 177.50888 * 19 18 16 37 37 H 1.09005 * 109.47600 * 301.17612 * 21 20 19 38 38 H 1.08992 * 109.49382 * 181.14240 * 21 20 19 39 39 H 1.09001 * 109.52565 * 182.48502 * 22 21 20 40 40 H 1.09001 * 109.57094 * 62.33035 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 2.9232 -8.4426 0.0044 16 6 2.1232 -9.7467 0.0036 17 8 1.3895 -9.8568 -1.2178 18 6 1.1512 -9.7523 1.1875 19 6 0.4137 -11.0934 1.2257 20 8 1.3632 -12.1574 1.3174 21 6 2.2669 -12.2298 0.2127 22 6 3.0805 -10.9352 0.1351 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4354 0.0021 27 1 3.3612 -5.9713 -0.8858 28 1 3.3585 -5.9707 0.8942 29 1 1.3632 -7.3515 -0.7789 30 1 3.5519 -8.4019 -0.8851 31 1 3.5505 -8.4012 0.8949 32 1 0.7608 -9.1370 -1.3650 33 1 1.7068 -9.6171 2.1155 34 1 0.4312 -8.9423 1.0715 35 1 -0.1750 -11.2091 0.3156 36 1 -0.2473 -11.1205 2.0921 37 1 1.7025 -12.3601 -0.7107 38 1 2.9411 -13.0752 0.3491 39 1 3.7390 -10.9703 -0.7328 40 1 3.6770 -10.8240 1.0406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162349642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:35 Heat of formation + Delta-G solvation = -142.255530 kcal Electronic energy + Delta-G solvation = -21019.163007 eV Core-core repulsion = 17640.408702 eV Total energy + Delta-G solvation = -3378.754305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22193 -38.87849 -37.18686 -34.96674 -34.13686 -32.44264 -32.30839 -31.30428 -28.75894 -27.06731 -25.06820 -23.79556 -22.60395 -22.09021 -20.35988 -19.76553 -17.65329 -16.80384 -16.52433 -16.22481 -15.85451 -15.80014 -15.24017 -15.08564 -14.79045 -14.54631 -14.26668 -13.75657 -13.41989 -13.19666 -12.96183 -12.50230 -12.35627 -12.28281 -12.04046 -11.95516 -11.54230 -11.47677 -11.06678 -11.00652 -10.90594 -10.61767 -10.35047 -10.25398 -9.61223 -9.43391 -9.10338 -8.77002 -8.53547 -7.92007 -6.19772 -4.26982 3.21727 3.27927 3.30253 3.31487 3.62244 3.71224 3.90800 4.23334 4.39630 4.51600 4.55020 4.63580 4.81982 5.07219 5.14728 5.16349 5.23713 5.29288 5.38947 5.40890 5.43530 5.49913 5.53557 5.56739 5.64172 5.77769 6.00923 6.05284 6.69772 7.01703 7.15553 7.27672 7.38271 7.39609 7.48101 7.63186 7.93681 8.58247 8.74511 9.05674 9.39808 10.90421 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.054792 B = 0.002778 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.904968 B =10075.708529 C =10296.724970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.713 5.713 11 C 0.496 3.504 12 O -0.545 6.545 13 C 0.041 3.959 14 N -0.669 5.669 15 C 0.033 3.967 16 C 0.135 3.865 17 O -0.561 6.561 18 C -0.171 4.171 19 C 0.062 3.938 20 O -0.387 6.387 21 C 0.065 3.935 22 C -0.140 4.140 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.390 0.610 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.346 0.654 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.379 0.621 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -20.856 -0.153 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.423 6.423 13 C -0.092 4.092 14 N -0.302 5.302 15 C -0.096 4.096 16 C 0.094 3.906 17 O -0.368 6.368 18 C -0.209 4.209 19 C -0.015 4.015 20 O -0.306 6.306 21 C -0.011 4.011 22 C -0.178 4.178 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.222 0.778 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.165 0.835 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.228 0.772 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.583 -21.525 0.626 22.518 hybrid contribution 0.993 1.971 -1.061 2.449 sum 7.576 -19.554 -0.435 20.975 Atomic orbital electron populations 1.69970 1.06118 1.27353 1.48813 1.24958 0.94921 0.99480 0.94670 0.86410 0.79621 0.82625 0.78223 1.20459 1.20965 1.19748 1.21224 0.93252 0.90469 1.53320 0.91917 1.19096 0.88274 0.81907 0.97723 1.46451 1.11132 1.06118 1.72546 1.20321 0.89496 0.84250 0.77908 1.90660 1.16638 1.84714 1.50269 1.21844 0.95714 0.89197 1.02426 1.60145 1.18994 1.00208 1.50841 1.22670 0.94921 0.90419 1.01619 1.21230 0.91383 0.93522 0.84468 1.86490 1.57643 1.52428 1.40259 1.22722 1.00367 0.98777 0.99007 1.22581 0.90835 0.85990 1.02080 1.87901 1.46574 1.51490 1.44628 1.22472 0.91944 0.96649 0.90083 1.22155 0.97871 0.94536 1.03280 0.92406 0.95595 0.95502 0.77762 0.92701 0.88461 0.83455 0.94262 0.89926 0.77186 0.90307 0.88801 0.92766 0.88990 0.92409 0.89120 0.90264 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 10 N -0.71 -14.54 5.55 -61.47 -0.34 -14.88 16 11 C 0.50 9.43 7.87 -10.98 -0.09 9.35 16 12 O -0.54 -12.58 16.20 5.56 0.09 -12.49 16 13 C 0.04 0.54 6.17 -4.97 -0.03 0.50 16 14 N -0.67 -8.14 5.23 -115.05 -0.60 -8.75 16 15 C 0.03 0.32 4.90 -3.82 -0.02 0.31 16 16 C 0.13 1.28 0.80 -90.43 -0.07 1.21 16 17 O -0.56 -5.64 11.94 -35.23 -0.42 -6.06 16 18 C -0.17 -1.72 4.86 -26.58 -0.13 -1.84 16 19 C 0.06 0.61 6.69 37.21 0.25 0.86 16 20 O -0.39 -4.27 10.77 -35.23 -0.38 -4.65 16 21 C 0.07 0.59 6.70 37.21 0.25 0.84 16 22 C -0.14 -1.18 5.15 -26.59 -0.14 -1.32 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.35 4.28 7.02 -39.29 -0.28 4.01 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.38 3.23 7.63 45.56 0.35 3.58 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.04 7.60 -51.93 -0.39 0.65 16 35 H 0.05 0.54 7.82 -51.93 -0.41 0.13 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -32.44 328.80 -7.06 -39.50 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.66 Total: 8.78 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.42 Total: 3.14 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.21 Total: -48.82 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.71 Total: -23.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.44 -7.06 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162349642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.756 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds