Wall clock time and date at job start Mon Mar 30 2020 04:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99793 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.54812 * 65.00120 * 16 15 14 18 18 C 1.53185 * 109.54562 * 304.82222 * 16 15 14 19 19 C 1.53099 * 109.15916 * 183.24616 * 18 16 15 20 20 O 1.42898 * 109.49288 * 57.47249 * 19 18 16 21 21 C 1.42910 * 114.09849 * 298.89398 * 20 19 18 22 22 C 1.53093 * 109.41619 * 61.14913 * 21 20 19 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 25 25 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 26 26 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 28 28 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 29 29 H 1.00898 * 110.99877 * 56.04636 * 14 13 11 30 30 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 31 31 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 32 32 H 0.96699 * 113.99250 * 300.00070 * 17 16 15 33 33 H 1.09005 * 109.51840 * 303.06103 * 18 16 15 34 34 H 1.08997 * 109.51837 * 63.24603 * 18 16 15 35 35 H 1.09007 * 109.40375 * 297.49152 * 19 18 16 36 36 H 1.09003 * 109.49122 * 177.50888 * 19 18 16 37 37 H 1.09005 * 109.47600 * 301.17612 * 21 20 19 38 38 H 1.08992 * 109.49382 * 181.14240 * 21 20 19 39 39 H 1.09001 * 109.52565 * 182.48502 * 22 21 20 40 40 H 1.09001 * 109.57094 * 62.33035 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 2.9232 -8.4426 0.0044 16 6 2.1232 -9.7467 0.0036 17 8 1.3895 -9.8568 -1.2178 18 6 1.1512 -9.7523 1.1875 19 6 0.4137 -11.0934 1.2257 20 8 1.3632 -12.1574 1.3174 21 6 2.2669 -12.2298 0.2127 22 6 3.0805 -10.9352 0.1351 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4354 0.0021 27 1 3.3612 -5.9713 -0.8858 28 1 3.3585 -5.9707 0.8942 29 1 1.3632 -7.3515 -0.7789 30 1 3.5519 -8.4019 -0.8851 31 1 3.5505 -8.4012 0.8949 32 1 0.7608 -9.1370 -1.3650 33 1 1.7068 -9.6171 2.1155 34 1 0.4312 -8.9423 1.0715 35 1 -0.1750 -11.2091 0.3156 36 1 -0.2473 -11.1205 2.0921 37 1 1.7025 -12.3601 -0.7107 38 1 2.9411 -13.0752 0.3491 39 1 3.7390 -10.9703 -0.7328 40 1 3.6770 -10.8240 1.0406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162349642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:35 Heat of formation + Delta-G solvation = -170.305836 kcal Electronic energy + Delta-G solvation = -21020.379360 eV Core-core repulsion = 17640.408702 eV Total energy + Delta-G solvation = -3379.970657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03126 -40.39964 -38.03864 -36.25138 -35.71900 -34.34041 -33.17886 -32.05023 -30.19033 -28.56358 -26.24128 -24.63611 -24.23933 -23.05991 -21.42775 -21.06774 -19.14757 -17.98468 -17.55702 -17.29273 -17.01950 -16.94822 -16.79135 -16.11944 -15.95336 -15.74005 -15.56542 -14.77356 -14.60900 -14.48831 -14.03068 -13.93193 -13.78289 -13.34289 -13.21186 -12.93274 -12.88061 -12.79003 -12.68703 -12.23392 -12.23259 -11.81628 -11.49228 -11.35699 -11.03223 -10.80795 -10.76088 -10.32864 -9.82702 -9.44794 -8.29805 -6.46391 1.42928 1.45108 1.56364 1.78807 2.27495 2.47256 2.97211 3.05228 3.15424 3.23882 3.74556 3.81048 3.86145 3.98840 4.10061 4.32239 4.34533 4.41280 4.47876 4.58625 4.67459 4.71645 4.77105 4.82268 4.92531 5.08172 5.10822 5.23249 5.24343 5.28455 5.48534 5.66575 5.83158 5.85832 6.21295 6.27124 6.65208 6.66734 6.93732 7.23348 7.51612 8.82375 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.054792 B = 0.002778 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.904968 B =10075.708529 C =10296.724970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.591 6.591 13 C 0.058 3.942 14 N -0.682 5.682 15 C 0.040 3.960 16 C 0.135 3.865 17 O -0.570 6.570 18 C -0.166 4.166 19 C 0.061 3.939 20 O -0.403 6.403 21 C 0.061 3.939 22 C -0.138 4.138 23 H 0.269 0.731 24 H -0.013 1.013 25 H -0.014 1.014 26 H 0.408 0.592 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.343 0.657 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.384 0.616 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 -21.133 -0.190 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.279 3.721 12 O -0.472 6.472 13 C -0.074 4.074 14 N -0.315 5.315 15 C -0.089 4.089 16 C 0.094 3.906 17 O -0.378 6.378 18 C -0.204 4.204 19 C -0.015 4.015 20 O -0.322 6.322 21 C -0.016 4.016 22 C -0.176 4.176 23 H 0.077 0.923 24 H 0.005 0.995 25 H 0.004 0.996 26 H 0.244 0.756 27 H 0.102 0.898 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.233 0.767 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.534 -21.839 0.587 23.837 hybrid contribution 0.034 1.963 -1.056 2.229 sum 9.568 -19.877 -0.468 22.065 Atomic orbital electron populations 1.70134 1.08289 1.28565 1.50021 1.26072 0.95767 1.03940 0.93896 0.85164 0.78510 0.76999 0.78590 1.19603 1.21044 1.17875 1.21633 0.94328 0.90619 1.52796 0.89771 1.18506 0.88701 0.84386 0.93978 1.46181 1.11179 1.05582 1.73051 1.21429 0.89984 0.84926 0.75763 1.90640 1.19272 1.85378 1.51897 1.21747 0.93991 0.86791 1.04891 1.60132 1.19755 1.00559 1.51080 1.22678 0.94479 0.89166 1.02558 1.21291 0.91360 0.94098 0.83879 1.86480 1.57901 1.52869 1.40518 1.22642 1.00201 0.98219 0.99303 1.22598 0.90851 0.85866 1.02223 1.87880 1.47044 1.51754 1.45532 1.22622 0.91919 0.97833 0.89193 1.22171 0.97638 0.93484 1.04273 0.92259 0.99515 0.99644 0.75592 0.89774 0.86010 0.83824 0.93257 0.88812 0.76685 0.90541 0.90268 0.93117 0.88432 0.93249 0.87217 0.89171 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 2 C 0.00 0.15 5.46 84.66 0.46 0.62 16 3 Si 0.98 41.86 29.54 68.60 2.03 43.89 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.03 16 9 C 0.27 14.48 5.43 85.63 0.46 14.95 16 10 N -0.71 -28.77 5.55 -466.78 -2.59 -31.36 16 11 C 0.49 18.54 7.87 87.66 0.69 19.23 16 12 O -0.59 -28.09 16.20 -3.03 -0.05 -28.14 16 13 C 0.06 1.37 6.17 85.56 0.53 1.90 16 14 N -0.68 -15.43 5.23 -517.92 -2.71 -18.14 16 15 C 0.04 0.67 4.90 86.30 0.42 1.09 16 16 C 0.13 2.32 0.80 -10.67 -0.01 2.31 16 17 O -0.57 -10.83 11.94 -148.98 -1.78 -12.61 16 18 C -0.17 -3.20 4.86 30.69 0.15 -3.05 16 19 C 0.06 1.19 6.69 72.02 0.48 1.67 16 20 O -0.40 -8.46 10.77 -148.98 -1.60 -10.06 16 21 C 0.06 0.99 6.70 72.01 0.48 1.47 16 22 C -0.14 -2.00 5.15 30.68 0.16 -1.84 16 23 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 24 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.41 13.41 8.32 -92.71 -0.77 12.63 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.34 8.19 7.02 -89.70 -0.63 7.56 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.38 6.39 7.63 -74.06 -0.57 5.82 16 33 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.77 7.60 -2.39 -0.02 1.75 16 35 H 0.05 1.00 7.82 -2.38 -0.02 0.98 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 0.88 7.82 -2.38 -0.02 0.86 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.21 328.80 -3.26 -75.47 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.91 Total: 27.93 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.07 Total: 8.72 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -5.01 Total: -105.20 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -3.43 Total: -50.81 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -72.21 -3.26 -75.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162349642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.835 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds