Wall clock time and date at job start Mon Mar 30 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.50765 * 2 1 4 4 C 1.53100 * 109.50579 * 239.86779 * 2 1 3 5 5 N 1.47012 * 109.25969 * 183.21539 * 4 2 1 6 6 C 1.47010 * 110.74820 * 58.61848 * 5 4 2 7 7 C 1.53099 * 109.26198 * 301.38366 * 6 5 4 8 8 H 1.09004 * 109.54042 * 296.89708 * 7 6 5 9 9 C 1.52998 * 109.50869 * 176.78865 * 7 6 5 10 10 O 1.42902 * 109.47124 * 175.21622 * 9 7 6 11 11 C 1.42895 * 114.00169 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47447 * 180.02562 * 11 10 9 13 13 O 1.21297 * 119.99867 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00325 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99974 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00583 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00110 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99820 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00230 * 179.72236 * 17 15 14 20 20 H 1.48506 * 109.46753 * 60.00578 * 19 17 15 21 21 H 1.48497 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47346 * 300.00478 * 19 17 15 23 23 O 1.43011 * 109.25632 * 56.84808 * 7 6 5 24 24 H 1.08997 * 109.46984 * 299.91089 * 1 2 3 25 25 H 1.09002 * 109.47201 * 59.91718 * 1 2 3 26 26 H 1.09005 * 109.47102 * 179.91485 * 1 2 3 27 27 H 1.09000 * 109.46937 * 180.09206 * 3 2 1 28 28 H 1.09008 * 109.47068 * 300.08536 * 3 2 1 29 29 H 1.09001 * 109.46983 * 60.08603 * 3 2 1 30 30 H 1.09008 * 109.50794 * 303.15472 * 4 2 1 31 31 H 1.09003 * 109.50377 * 63.27965 * 4 2 1 32 32 H 1.00899 * 110.99981 * 294.84463 * 5 4 2 33 33 H 1.09001 * 109.50495 * 181.45000 * 6 5 4 34 34 H 1.08999 * 109.50958 * 61.31991 * 6 5 4 35 35 H 1.08996 * 109.47541 * 55.21772 * 9 7 6 36 36 H 1.08995 * 109.46952 * 295.21387 * 9 7 6 37 37 H 1.09005 * 109.47122 * 59.99813 * 11 10 9 38 38 H 1.08999 * 109.47340 * 300.00737 * 11 10 9 39 39 H 0.97005 * 119.99841 * 0.02562 * 14 12 11 40 40 H 0.97000 * 120.00377 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0412 -0.7244 -1.2481 5 7 3.5093 -0.7890 -1.2042 6 6 3.9639 -1.4885 0.0063 7 6 3.4334 -0.7565 1.2419 8 1 3.8533 0.2488 1.2783 9 6 3.8358 -1.5243 2.5026 10 8 3.4377 -0.7842 3.6584 11 6 3.7680 -1.4173 4.8961 12 6 3.3041 -0.5546 6.0413 13 8 2.7451 0.4988 5.8193 14 7 3.5103 -0.9533 7.3121 15 6 3.0887 -0.1681 8.3538 16 1 2.5910 0.7698 8.1562 17 6 3.3008 -0.5793 9.6640 18 7 3.9060 -1.7208 9.9046 19 14 2.7333 0.4942 11.0835 20 1 1.2631 0.6866 11.0015 21 1 3.0759 -0.1642 12.3697 22 1 3.4103 1.8137 11.0076 23 8 2.0076 -0.6759 1.1664 24 1 -0.3633 0.5124 0.8908 25 1 -0.3634 0.5151 -0.8893 26 1 -0.3633 -1.0277 -0.0015 27 1 3.1309 1.4414 -0.0017 28 1 1.6766 1.9567 -0.8893 29 1 1.6792 1.9557 0.8908 30 1 1.6331 -1.7349 -1.2753 31 1 1.7273 -0.1803 -2.1389 32 1 3.9137 0.1336 -1.2621 33 1 5.0535 -1.5021 0.0312 34 1 3.5865 -2.5110 -0.0009 35 1 4.9169 -1.6625 2.5143 36 1 3.3450 -2.4974 2.5074 37 1 4.8478 -1.5538 4.9577 38 1 3.2756 -2.3882 4.9504 39 1 3.9577 -1.7955 7.4896 40 1 4.0544 -2.0078 10.8192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162664670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:01 Heat of formation + Delta-G solvation = -126.958380 kcal Electronic energy + Delta-G solvation = -21373.844994 eV Core-core repulsion = 17995.754023 eV Total energy + Delta-G solvation = -3378.090971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37877 -38.42452 -36.90007 -34.67306 -34.09377 -33.79238 -31.25001 -30.02596 -27.79233 -27.58477 -26.11018 -24.35280 -23.57863 -21.94010 -19.87751 -19.38058 -17.93155 -16.86643 -16.75940 -16.39781 -15.88296 -15.43251 -15.29341 -14.88519 -14.63764 -14.38289 -13.75590 -13.62281 -13.39877 -12.97871 -12.77466 -12.37202 -12.16823 -12.05517 -12.01052 -11.74633 -11.66874 -11.53052 -11.32073 -11.08042 -11.03171 -11.01708 -10.43204 -10.21390 -10.03490 -9.51715 -9.32578 -8.47591 -8.31083 -7.97091 -6.41328 -3.82380 3.21349 3.26632 3.30654 3.48372 3.63665 3.89507 3.92345 4.22954 4.48794 4.63736 4.73545 4.84708 4.90320 5.00388 5.11239 5.22877 5.25051 5.30615 5.39631 5.40756 5.48234 5.55409 5.56318 5.63606 5.69010 5.77620 5.79911 5.92020 6.03301 6.07779 6.24048 6.51635 6.95175 7.17578 7.44621 7.55769 8.05800 8.61894 9.18062 9.52496 10.04876 10.76470 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.003313 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.356955 B = 8450.499067 C = 8911.086095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 C -0.179 4.179 4 C 0.033 3.967 5 N -0.680 5.680 6 C 0.028 3.972 7 C 0.056 3.944 8 H 0.069 0.931 9 C 0.069 3.931 10 O -0.351 6.351 11 C 0.054 3.946 12 C 0.443 3.557 13 O -0.575 6.575 14 N -0.561 5.561 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.932 3.068 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 O -0.353 6.353 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.341 0.659 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.393 0.607 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 -1.469 -20.705 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.030 3.970 3 C -0.237 4.237 4 C -0.097 4.097 5 N -0.308 5.308 6 C -0.102 4.102 7 C -0.004 4.004 8 H 0.087 0.913 9 C -0.009 4.009 10 O -0.268 6.268 11 C -0.026 4.026 12 C 0.228 3.772 13 O -0.458 6.458 14 N -0.199 5.199 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.759 3.241 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.199 1.199 23 O -0.272 6.272 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.160 0.840 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.226 0.774 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.480 -1.309 -20.972 21.019 hybrid contribution 0.216 0.425 1.469 1.544 sum -0.264 -0.883 -19.504 19.525 Atomic orbital electron populations 1.21690 0.91979 1.02914 1.02696 1.22220 0.95966 0.91760 0.87038 1.22404 1.01333 0.96584 1.03340 1.22705 0.88050 1.01780 0.97175 1.60939 1.07689 1.24287 1.37922 1.22626 1.01011 0.99125 0.87418 1.22802 0.83203 0.99799 0.94597 0.91297 1.22410 0.98271 0.95009 0.85188 1.88091 1.81415 1.45363 1.11965 1.22175 0.99335 0.96078 0.85031 1.19548 0.85861 0.88251 0.83533 1.90547 1.46204 1.24859 1.84181 1.41736 1.52623 1.21847 1.03705 1.19665 1.35368 1.03804 0.84059 0.87896 1.25264 0.97132 0.96774 0.98703 1.69604 1.42182 1.20822 1.21761 0.85890 0.79259 0.79538 0.79379 1.19838 1.20944 1.19862 1.88235 1.19608 1.77407 1.41937 0.91355 0.91199 0.91784 0.92610 0.91515 0.90891 0.89909 0.89740 0.84027 0.89348 0.89651 0.91965 0.92618 0.91912 0.91811 0.77375 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 2 C 0.07 0.79 1.11 -90.57 -0.10 0.69 16 3 C -0.18 -1.86 8.03 37.16 0.30 -1.56 16 4 C 0.03 0.30 5.52 -3.71 -0.02 0.28 16 5 N -0.68 -6.23 6.85 -113.49 -0.78 -7.01 16 6 C 0.03 0.27 6.05 -3.71 -0.02 0.25 16 7 C 0.06 0.71 2.68 -26.68 -0.07 0.64 16 8 H 0.07 0.92 6.50 -51.93 -0.34 0.59 16 9 C 0.07 0.97 5.61 37.16 0.21 1.17 16 10 O -0.35 -6.92 9.84 -59.68 -0.59 -7.51 16 11 C 0.05 1.04 6.42 36.01 0.23 1.27 16 12 C 0.44 11.26 7.86 -10.99 -0.09 11.17 16 13 O -0.57 -17.09 16.08 -14.37 -0.23 -17.32 16 14 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 15 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 16 16 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 19 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 O -0.35 -5.23 9.89 -39.95 -0.40 -5.62 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.56 5.28 -51.93 -0.27 0.28 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.34 2.80 7.35 -39.29 -0.29 2.51 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -34.21 327.51 -7.12 -41.33 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.23 Total: 9.01 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.52 Total: 4.70 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.11 Total: -45.81 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.21 Total: -30.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.21 -7.12 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162664670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.628 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds