Wall clock time and date at job start Mon Mar 30 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.50765 * 2 1 4 4 C 1.53100 * 109.50579 * 239.86779 * 2 1 3 5 5 N 1.47012 * 109.25969 * 183.21539 * 4 2 1 6 6 C 1.47010 * 110.74820 * 58.61848 * 5 4 2 7 7 C 1.53099 * 109.26198 * 301.38366 * 6 5 4 8 8 H 1.09004 * 109.54042 * 296.89708 * 7 6 5 9 9 C 1.52998 * 109.50869 * 176.78865 * 7 6 5 10 10 O 1.42902 * 109.47124 * 175.21622 * 9 7 6 11 11 C 1.42895 * 114.00169 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47447 * 180.02562 * 11 10 9 13 13 O 1.21297 * 119.99867 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00325 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99974 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00583 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00110 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99820 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00230 * 179.72236 * 17 15 14 20 20 H 1.48506 * 109.46753 * 60.00578 * 19 17 15 21 21 H 1.48497 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47346 * 300.00478 * 19 17 15 23 23 O 1.43011 * 109.25632 * 56.84808 * 7 6 5 24 24 H 1.08997 * 109.46984 * 299.91089 * 1 2 3 25 25 H 1.09002 * 109.47201 * 59.91718 * 1 2 3 26 26 H 1.09005 * 109.47102 * 179.91485 * 1 2 3 27 27 H 1.09000 * 109.46937 * 180.09206 * 3 2 1 28 28 H 1.09008 * 109.47068 * 300.08536 * 3 2 1 29 29 H 1.09001 * 109.46983 * 60.08603 * 3 2 1 30 30 H 1.09008 * 109.50794 * 303.15472 * 4 2 1 31 31 H 1.09003 * 109.50377 * 63.27965 * 4 2 1 32 32 H 1.00899 * 110.99981 * 294.84463 * 5 4 2 33 33 H 1.09001 * 109.50495 * 181.45000 * 6 5 4 34 34 H 1.08999 * 109.50958 * 61.31991 * 6 5 4 35 35 H 1.08996 * 109.47541 * 55.21772 * 9 7 6 36 36 H 1.08995 * 109.46952 * 295.21387 * 9 7 6 37 37 H 1.09005 * 109.47122 * 59.99813 * 11 10 9 38 38 H 1.08999 * 109.47340 * 300.00737 * 11 10 9 39 39 H 0.97005 * 119.99841 * 0.02562 * 14 12 11 40 40 H 0.97000 * 120.00377 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0412 -0.7244 -1.2481 5 7 3.5093 -0.7890 -1.2042 6 6 3.9639 -1.4885 0.0063 7 6 3.4334 -0.7565 1.2419 8 1 3.8533 0.2488 1.2783 9 6 3.8358 -1.5243 2.5026 10 8 3.4377 -0.7842 3.6584 11 6 3.7680 -1.4173 4.8961 12 6 3.3041 -0.5546 6.0413 13 8 2.7451 0.4988 5.8193 14 7 3.5103 -0.9533 7.3121 15 6 3.0887 -0.1681 8.3538 16 1 2.5910 0.7698 8.1562 17 6 3.3008 -0.5793 9.6640 18 7 3.9060 -1.7208 9.9046 19 14 2.7333 0.4942 11.0835 20 1 1.2631 0.6866 11.0015 21 1 3.0759 -0.1642 12.3697 22 1 3.4103 1.8137 11.0076 23 8 2.0076 -0.6759 1.1664 24 1 -0.3633 0.5124 0.8908 25 1 -0.3634 0.5151 -0.8893 26 1 -0.3633 -1.0277 -0.0015 27 1 3.1309 1.4414 -0.0017 28 1 1.6766 1.9567 -0.8893 29 1 1.6792 1.9557 0.8908 30 1 1.6331 -1.7349 -1.2753 31 1 1.7273 -0.1803 -2.1389 32 1 3.9137 0.1336 -1.2621 33 1 5.0535 -1.5021 0.0312 34 1 3.5865 -2.5110 -0.0009 35 1 4.9169 -1.6625 2.5143 36 1 3.3450 -2.4974 2.5074 37 1 4.8478 -1.5538 4.9577 38 1 3.2756 -2.3882 4.9504 39 1 3.9577 -1.7955 7.4896 40 1 4.0544 -2.0078 10.8192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162664670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:01 Heat of formation + Delta-G solvation = -154.008210 kcal Electronic energy + Delta-G solvation = -21375.017962 eV Core-core repulsion = 17995.754023 eV Total energy + Delta-G solvation = -3379.263939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26230 -40.27986 -38.42130 -36.01757 -35.49903 -34.92531 -33.36463 -31.07910 -29.26004 -28.45337 -27.16460 -26.17181 -24.50843 -22.89165 -21.36586 -20.69833 -20.02471 -18.14690 -17.83251 -17.39866 -17.32835 -16.82522 -16.65439 -16.25759 -15.94688 -15.54628 -15.43877 -15.10612 -14.69432 -14.12965 -14.02485 -13.54600 -13.27258 -13.22969 -13.07133 -12.93687 -12.84851 -12.79045 -12.66771 -12.48585 -12.16717 -12.12582 -12.07600 -11.86802 -11.57350 -10.98118 -10.65839 -10.40053 -10.08566 -9.25171 -8.51224 -6.01249 1.37752 1.40372 1.51644 1.94775 2.16667 2.45368 2.62134 3.14690 3.19159 3.39284 3.68785 3.82676 3.91402 3.99555 4.07991 4.13247 4.21794 4.31583 4.37099 4.40160 4.43919 4.47600 4.58812 4.64985 4.75260 4.83156 4.87158 4.94333 4.97793 5.19006 5.26184 5.36402 5.77834 5.87904 6.15434 6.29127 6.32455 6.55486 7.06396 7.46163 8.02680 8.65885 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.003313 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.356955 B = 8450.499067 C = 8911.086095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 C -0.176 4.176 4 C 0.040 3.960 5 N -0.678 5.678 6 C 0.038 3.962 7 C 0.053 3.947 8 H 0.056 0.944 9 C 0.061 3.939 10 O -0.391 6.391 11 C 0.067 3.933 12 C 0.432 3.568 13 O -0.628 6.628 14 N -0.563 5.563 15 C -0.341 4.341 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.916 5.916 19 Si 0.996 3.004 20 H -0.272 1.272 21 H -0.266 1.266 22 H -0.271 1.271 23 O -0.391 6.391 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.348 0.652 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.400 0.600 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -2.330 -21.756 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.021 3.979 3 C -0.233 4.233 4 C -0.090 4.090 5 N -0.306 5.306 6 C -0.092 4.092 7 C -0.006 4.006 8 H 0.074 0.926 9 C -0.016 4.016 10 O -0.309 6.309 11 C -0.012 4.012 12 C 0.219 3.781 13 O -0.515 6.515 14 N -0.201 5.201 15 C -0.470 4.470 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.556 5.556 19 Si 0.818 3.182 20 H -0.197 1.197 21 H -0.190 1.190 22 H -0.196 1.196 23 O -0.311 6.311 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.167 0.833 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.234 0.766 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.362 -2.210 -22.037 22.151 hybrid contribution -0.044 0.681 1.758 1.886 sum 0.318 -1.529 -20.279 20.339 Atomic orbital electron populations 1.21730 0.91622 1.02934 1.02911 1.22502 0.96409 0.91973 0.87015 1.22379 1.01454 0.96357 1.03128 1.22675 0.87942 1.01606 0.96747 1.60978 1.07708 1.24752 1.37190 1.22592 1.02095 0.98601 0.85891 1.22928 0.82601 0.99518 0.95549 0.92631 1.22783 1.00330 0.94986 0.83454 1.88045 1.82384 1.47266 1.13247 1.22018 1.01296 0.94966 0.82938 1.20688 0.84507 0.88209 0.84647 1.90504 1.48444 1.27476 1.85109 1.41772 1.52573 1.21835 1.03948 1.19643 1.37567 1.04083 0.85737 0.90494 1.26071 0.96430 0.97962 1.00410 1.69655 1.41657 1.21456 1.22877 0.84959 0.78684 0.77934 0.76576 1.19726 1.19022 1.19620 1.88183 1.20825 1.78066 1.44026 0.93795 0.88275 0.91860 0.92400 0.88822 0.93894 0.90219 0.87440 0.83306 0.87231 0.89536 0.88772 0.91708 0.88429 0.89262 0.76554 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.85 71.98 0.64 -2.01 16 2 C 0.06 1.32 1.11 -10.76 -0.01 1.31 16 3 C -0.18 -3.58 8.03 71.98 0.58 -3.00 16 4 C 0.04 0.64 5.52 86.32 0.48 1.12 16 5 N -0.68 -10.78 6.85 -512.98 -3.51 -14.29 16 6 C 0.04 0.65 6.05 86.32 0.52 1.18 16 7 C 0.05 1.33 2.68 30.63 0.08 1.41 16 8 H 0.06 1.49 6.50 -2.38 -0.02 1.48 16 9 C 0.06 1.62 5.61 71.98 0.40 2.03 16 10 O -0.39 -15.38 9.84 -125.60 -1.24 -16.62 16 11 C 0.07 2.54 6.42 71.24 0.46 3.00 16 12 C 0.43 22.43 7.86 87.66 0.69 23.12 16 13 O -0.63 -39.00 16.08 15.95 0.26 -38.74 16 14 N -0.56 -30.09 5.29 -306.98 -1.62 -31.71 16 15 C -0.34 -20.01 9.68 84.04 0.81 -19.20 16 16 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 17 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 18 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 19 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 O -0.39 -11.67 9.89 -144.47 -1.43 -13.10 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 1.13 5.28 -2.39 -0.01 1.11 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.35 4.87 7.35 -89.69 -0.66 4.21 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.40 19.76 7.90 -92.70 -0.73 19.03 16 40 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -76.42 327.51 -0.46 -76.88 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.34 Total: 32.48 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.11 Total: 8.97 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -4.85 Total: -95.28 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -2.41 Total: -68.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.42 -0.46 -76.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162664670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.126 kcal (2) G-P(sol) polarization free energy of solvation -76.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds