Wall clock time and date at job start Mon Mar 30 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.54612 * 2 1 4 4 C 1.53103 * 109.50742 * 120.10993 * 2 1 3 5 5 N 1.47016 * 109.29298 * 63.10819 * 4 2 1 6 6 C 1.46894 * 110.99844 * 182.37346 * 5 4 2 7 7 C 1.50698 * 109.47251 * 169.99743 * 6 5 4 8 8 O 1.21298 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00322 * 180.02562 * 7 6 5 10 10 C 1.37097 * 120.00145 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99899 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99964 * 179.97438 * 10 9 7 13 13 N 1.31409 * 119.99647 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99899 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99483 * 14 12 10 16 16 H 1.48500 * 109.46872 * 209.99572 * 14 12 10 17 17 H 1.48499 * 109.47298 * 329.99474 * 14 12 10 18 18 C 1.47009 * 110.75376 * 58.59374 * 5 4 2 19 19 C 1.53093 * 109.26071 * 301.38357 * 18 5 4 20 20 H 1.09004 * 109.51138 * 296.91641 * 19 18 5 21 21 C 1.53001 * 109.50905 * 176.78472 * 19 18 5 22 22 O 1.42903 * 109.46867 * 175.00316 * 21 19 18 23 23 O 1.43015 * 109.25965 * 56.84798 * 19 18 5 24 24 H 1.09008 * 109.47034 * 299.89091 * 1 2 3 25 25 H 1.09000 * 109.47106 * 59.89096 * 1 2 3 26 26 H 1.08997 * 109.47263 * 179.89022 * 1 2 3 27 27 H 1.09001 * 109.47442 * 180.10883 * 3 2 1 28 28 H 1.09002 * 109.47277 * 300.11063 * 3 2 1 29 29 H 1.09005 * 109.47414 * 60.10596 * 3 2 1 30 30 H 1.09002 * 109.50635 * 303.14910 * 4 2 1 31 31 H 1.09003 * 109.50698 * 183.06522 * 4 2 1 32 32 H 1.09000 * 109.47347 * 289.99759 * 6 5 4 33 33 H 1.09006 * 109.47458 * 49.99988 * 6 5 4 34 34 H 0.96997 * 119.99811 * 359.97438 * 9 7 6 35 35 H 0.96999 * 119.99665 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.50528 * 61.32115 * 18 5 4 37 37 H 1.09003 * 109.50599 * 181.44906 * 18 5 4 38 38 H 1.09002 * 109.46690 * 294.99858 * 21 19 18 39 39 H 1.09000 * 109.47073 * 55.00145 * 21 19 18 40 40 H 0.96701 * 113.99276 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 1.6118 -2.1294 1.2050 6 6 2.0352 -2.8468 2.4149 7 6 1.3755 -4.2012 2.4525 8 8 0.6259 -4.5358 1.5595 9 7 1.6175 -5.0404 3.4790 10 6 1.0178 -6.2727 3.5129 11 1 0.3511 -6.5709 2.7174 12 6 1.2678 -7.1382 4.5710 13 7 0.6925 -8.3192 4.6037 14 14 2.4205 -6.6221 5.9473 15 1 1.6440 -5.9400 7.0136 16 1 3.0867 -7.8234 6.5115 17 1 3.4470 -5.6928 5.4110 18 6 2.1193 -2.7919 -0.0052 19 6 1.6065 -2.0480 -1.2411 20 1 0.5187 -2.1081 -1.2768 21 6 2.1959 -2.6842 -2.5016 22 8 1.6275 -2.0656 -3.6576 23 8 2.0066 -0.6770 -1.1662 24 1 -0.3633 0.5122 0.8910 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3634 -1.0276 -0.0020 27 1 3.1318 1.4404 -0.0020 28 1 1.6775 1.9567 -0.8890 29 1 1.6807 1.9556 0.8910 30 1 1.6331 -0.2460 2.1390 31 1 3.1298 -0.6767 1.2764 32 1 3.1181 -2.9703 2.4038 33 1 1.7435 -2.2760 3.2966 34 1 2.2167 -4.7727 4.1933 35 1 0.8667 -8.9231 5.3425 36 1 3.2092 -2.7777 0.0019 37 1 1.7683 -3.8236 -0.0297 38 1 3.2767 -2.5431 -2.5083 39 1 1.9684 -3.7501 -2.5109 40 1 1.9560 -2.4204 -4.4950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163789950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:06 Heat of formation + Delta-G solvation = -116.755759 kcal Electronic energy + Delta-G solvation = -22123.967474 eV Core-core repulsion = 18746.318922 eV Total energy + Delta-G solvation = -3377.648552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18795 -38.34471 -36.77841 -35.34546 -33.91378 -33.60360 -31.71136 -30.19325 -27.88717 -27.32153 -26.11918 -24.65738 -22.38681 -21.74956 -19.43079 -19.23226 -18.28849 -17.37172 -16.62799 -16.18930 -15.67925 -15.11457 -15.07096 -14.72296 -14.49623 -14.07676 -13.85414 -13.70200 -13.18603 -13.00054 -12.71423 -12.51095 -12.28298 -12.10458 -12.02893 -11.70086 -11.68947 -11.44916 -11.16582 -11.03697 -10.93889 -10.62069 -10.27255 -10.02059 -9.98581 -9.57601 -9.46342 -8.56815 -8.21190 -8.01880 -6.33805 -3.85253 3.00032 3.04717 3.12987 3.63895 3.68752 3.74216 4.07659 4.22782 4.73901 4.79139 4.95759 5.00214 5.16483 5.18807 5.23424 5.29219 5.40016 5.46237 5.51457 5.58030 5.61552 5.68266 5.72229 5.77775 5.86041 5.88923 5.97955 6.09724 6.16529 6.23917 6.48439 7.05664 7.15079 7.37339 7.55507 7.59800 8.11517 8.57213 8.92309 9.39530 9.79891 10.79264 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.004554 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.791074 B = 6147.624945 C = 6781.789911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 C -0.135 4.135 4 C 0.029 3.971 5 N -0.509 5.509 6 C 0.043 3.957 7 C 0.452 3.548 8 O -0.560 6.560 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.024 3.976 19 C 0.096 3.904 20 H 0.079 0.921 21 C 0.086 3.914 22 O -0.566 6.566 23 O -0.370 6.370 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.033 0.967 37 H 0.115 0.885 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 16.024 -7.714 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.076 3.924 3 C -0.193 4.193 4 C -0.100 4.100 5 N -0.233 5.233 6 C -0.088 4.088 7 C 0.238 3.762 8 O -0.442 6.442 9 N -0.229 5.229 10 C -0.434 4.434 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.104 4.104 19 C 0.038 3.962 20 H 0.097 0.903 21 C 0.008 3.992 22 O -0.370 6.370 23 O -0.290 6.290 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.133 0.867 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.012 15.999 -7.895 18.532 hybrid contribution 2.020 -0.290 1.206 2.371 sum 7.032 15.709 -6.689 18.465 Atomic orbital electron populations 1.22278 0.94800 1.03890 1.01628 1.21493 0.94181 0.92083 0.84607 1.21722 1.01565 0.93443 1.02538 1.22841 0.98239 0.89735 0.99169 1.61717 1.59519 1.00690 1.01394 1.21913 0.97889 0.95414 0.93609 1.19612 0.86298 0.85865 0.84421 1.90522 1.39085 1.76606 1.37945 1.42214 1.43167 1.16071 1.21497 1.19425 1.25189 0.89272 1.09469 0.86241 1.25034 0.97799 0.95449 0.97809 1.69619 1.42756 1.07457 1.32230 0.86679 0.81037 0.78902 0.82805 1.19573 1.20172 1.19572 1.22848 0.96989 1.01450 0.89129 1.22095 1.00101 0.81570 0.92450 0.90321 1.22121 0.96758 0.95639 0.84701 1.86533 1.69640 1.64950 1.15899 1.88009 1.75439 1.22949 1.42559 0.91970 0.92526 0.90514 0.92134 0.91599 0.91101 0.89795 0.94344 0.93248 0.89002 0.79721 0.91592 0.94897 0.86726 0.93137 0.91658 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.17 37.15 0.30 -1.90 16 2 C 0.12 1.51 1.11 -90.57 -0.10 1.40 16 3 C -0.14 -1.37 8.85 37.15 0.33 -1.04 16 4 C 0.03 0.38 4.34 -3.71 -0.02 0.36 16 5 N -0.51 -8.30 3.83 -235.75 -0.90 -9.20 16 6 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 7 C 0.45 10.08 7.49 -10.99 -0.08 10.00 16 8 O -0.56 -14.53 13.93 5.54 0.08 -14.46 16 9 N -0.59 -13.85 5.09 -10.96 -0.06 -13.90 16 10 C -0.30 -8.50 10.16 -14.93 -0.15 -8.66 16 11 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 14 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 18 C 0.02 0.39 4.58 -3.72 -0.02 0.37 16 19 C 0.10 1.46 2.69 -26.68 -0.07 1.39 16 20 H 0.08 1.33 6.49 -51.93 -0.34 0.99 16 21 C 0.09 1.10 6.71 37.16 0.25 1.35 16 22 O -0.57 -7.13 13.63 -39.74 -0.54 -7.68 16 23 O -0.37 -5.59 9.89 -39.74 -0.39 -5.99 16 24 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.19 6.12 -51.93 -0.32 0.87 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.09 1.33 8.04 -51.93 -0.42 0.92 16 34 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 2.18 5.88 -51.93 -0.31 1.88 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.38 2.76 9.12 45.56 0.42 3.18 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -33.36 320.44 -6.01 -39.37 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.40 Total: 12.29 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 0.32 Total: 5.02 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.18 Total: -47.84 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.86 Total: -28.12 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.36 -6.01 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163789950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.383 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds