Wall clock time and date at job start Mon Mar 30 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.54612 * 2 1 4 4 C 1.53103 * 109.50742 * 120.10993 * 2 1 3 5 5 N 1.47016 * 109.29298 * 63.10819 * 4 2 1 6 6 C 1.46894 * 110.99844 * 182.37346 * 5 4 2 7 7 C 1.50698 * 109.47251 * 169.99743 * 6 5 4 8 8 O 1.21298 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00322 * 180.02562 * 7 6 5 10 10 C 1.37097 * 120.00145 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99899 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99964 * 179.97438 * 10 9 7 13 13 N 1.31409 * 119.99647 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99899 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99483 * 14 12 10 16 16 H 1.48500 * 109.46872 * 209.99572 * 14 12 10 17 17 H 1.48499 * 109.47298 * 329.99474 * 14 12 10 18 18 C 1.47009 * 110.75376 * 58.59374 * 5 4 2 19 19 C 1.53093 * 109.26071 * 301.38357 * 18 5 4 20 20 H 1.09004 * 109.51138 * 296.91641 * 19 18 5 21 21 C 1.53001 * 109.50905 * 176.78472 * 19 18 5 22 22 O 1.42903 * 109.46867 * 175.00316 * 21 19 18 23 23 O 1.43015 * 109.25965 * 56.84798 * 19 18 5 24 24 H 1.09008 * 109.47034 * 299.89091 * 1 2 3 25 25 H 1.09000 * 109.47106 * 59.89096 * 1 2 3 26 26 H 1.08997 * 109.47263 * 179.89022 * 1 2 3 27 27 H 1.09001 * 109.47442 * 180.10883 * 3 2 1 28 28 H 1.09002 * 109.47277 * 300.11063 * 3 2 1 29 29 H 1.09005 * 109.47414 * 60.10596 * 3 2 1 30 30 H 1.09002 * 109.50635 * 303.14910 * 4 2 1 31 31 H 1.09003 * 109.50698 * 183.06522 * 4 2 1 32 32 H 1.09000 * 109.47347 * 289.99759 * 6 5 4 33 33 H 1.09006 * 109.47458 * 49.99988 * 6 5 4 34 34 H 0.96997 * 119.99811 * 359.97438 * 9 7 6 35 35 H 0.96999 * 119.99665 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.50528 * 61.32115 * 18 5 4 37 37 H 1.09003 * 109.50599 * 181.44906 * 18 5 4 38 38 H 1.09002 * 109.46690 * 294.99858 * 21 19 18 39 39 H 1.09000 * 109.47073 * 55.00145 * 21 19 18 40 40 H 0.96701 * 113.99276 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 1.6118 -2.1294 1.2050 6 6 2.0352 -2.8468 2.4149 7 6 1.3755 -4.2012 2.4525 8 8 0.6259 -4.5358 1.5595 9 7 1.6175 -5.0404 3.4790 10 6 1.0178 -6.2727 3.5129 11 1 0.3511 -6.5709 2.7174 12 6 1.2678 -7.1382 4.5710 13 7 0.6925 -8.3192 4.6037 14 14 2.4205 -6.6221 5.9473 15 1 1.6440 -5.9400 7.0136 16 1 3.0867 -7.8234 6.5115 17 1 3.4470 -5.6928 5.4110 18 6 2.1193 -2.7919 -0.0052 19 6 1.6065 -2.0480 -1.2411 20 1 0.5187 -2.1081 -1.2768 21 6 2.1959 -2.6842 -2.5016 22 8 1.6275 -2.0656 -3.6576 23 8 2.0066 -0.6770 -1.1662 24 1 -0.3633 0.5122 0.8910 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3634 -1.0276 -0.0020 27 1 3.1318 1.4404 -0.0020 28 1 1.6775 1.9567 -0.8890 29 1 1.6807 1.9556 0.8910 30 1 1.6331 -0.2460 2.1390 31 1 3.1298 -0.6767 1.2764 32 1 3.1181 -2.9703 2.4038 33 1 1.7435 -2.2760 3.2966 34 1 2.2167 -4.7727 4.1933 35 1 0.8667 -8.9231 5.3425 36 1 3.2092 -2.7777 0.0019 37 1 1.7683 -3.8236 -0.0297 38 1 3.2767 -2.5431 -2.5083 39 1 1.9684 -3.7501 -2.5109 40 1 1.9560 -2.4204 -4.4950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163789950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:06 Heat of formation + Delta-G solvation = -145.723783 kcal Electronic energy + Delta-G solvation = -22125.223622 eV Core-core repulsion = 18746.318922 eV Total energy + Delta-G solvation = -3378.904700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37958 -40.06014 -37.77807 -36.70751 -35.79632 -34.66030 -33.75529 -31.38029 -29.26831 -28.25089 -27.22900 -26.45194 -23.72400 -22.82862 -21.26910 -20.40186 -20.15292 -18.39679 -17.95527 -17.52992 -16.93457 -16.79631 -16.43884 -15.96909 -15.66755 -15.43835 -15.20827 -15.10502 -14.73238 -14.31652 -14.15170 -14.03882 -13.48113 -13.24035 -13.07919 -13.00348 -12.78297 -12.69650 -12.56362 -12.41161 -12.12780 -12.02106 -11.96321 -11.49975 -11.31592 -10.99729 -10.70209 -10.26865 -10.21276 -9.29209 -8.41065 -6.01762 1.30070 1.35640 1.44316 1.94785 2.23011 2.45920 2.64366 2.99432 3.15552 3.40825 3.78838 3.91002 3.98843 4.04418 4.07553 4.24520 4.27068 4.32064 4.37250 4.47721 4.48257 4.58619 4.67072 4.75286 4.79442 4.90016 4.94333 5.02697 5.09108 5.27656 5.43439 5.52788 5.82243 5.94551 6.04027 6.28666 6.59783 6.87494 6.88611 7.39818 7.96741 8.76585 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.004554 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.791074 B = 6147.624945 C = 6781.789911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 C -0.129 4.129 4 C 0.031 3.969 5 N -0.531 5.531 6 C 0.054 3.946 7 C 0.452 3.548 8 O -0.604 6.604 9 N -0.591 5.591 10 C -0.326 4.326 11 H 0.056 0.944 12 C -0.014 4.014 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.276 1.276 17 H -0.231 1.231 18 C 0.031 3.969 19 C 0.099 3.901 20 H 0.051 0.949 21 C 0.089 3.911 22 O -0.583 6.583 23 O -0.378 6.378 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.389 0.611 35 H 0.279 0.721 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 19.067 -6.136 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 C -0.186 4.186 4 C -0.096 4.096 5 N -0.256 5.256 6 C -0.076 4.076 7 C 0.239 3.761 8 O -0.488 6.488 9 N -0.233 5.233 10 C -0.456 4.456 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.576 5.576 14 Si 0.784 3.216 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.155 1.155 18 C -0.098 4.098 19 C 0.041 3.959 20 H 0.069 0.931 21 C 0.011 3.989 22 O -0.392 6.392 23 O -0.298 6.298 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.653 19.075 -6.348 21.511 hybrid contribution 1.078 -1.232 0.563 1.732 sum 8.732 17.843 -5.784 20.690 Atomic orbital electron populations 1.22231 0.95384 1.01977 1.02552 1.21808 0.93906 0.93586 0.84021 1.21721 1.01914 0.91249 1.03720 1.22942 0.99138 0.87463 1.00096 1.61655 1.60580 1.02334 1.00998 1.21860 0.98721 0.91866 0.95195 1.20818 0.84941 0.87495 0.82800 1.90519 1.40876 1.77977 1.39469 1.42028 1.43717 1.14808 1.22749 1.18989 1.25861 0.91933 1.08773 0.92626 1.26093 0.99595 0.94813 1.00774 1.69804 1.44806 1.09228 1.33731 0.85377 0.78846 0.79297 0.78078 1.18158 1.20120 1.15479 1.22655 0.97436 0.99665 0.90006 1.21977 0.98593 0.82101 0.93244 0.93108 1.22070 0.97361 0.95472 0.84028 1.86471 1.70215 1.65445 1.17036 1.88006 1.75475 1.22562 1.43791 0.90143 0.92512 0.93767 0.91521 0.91714 0.88693 0.87552 0.93007 0.90366 0.85652 0.77532 0.91175 0.93629 0.90410 0.91562 0.91394 0.75158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 8.17 71.98 0.59 -3.52 16 2 C 0.11 2.51 1.11 -10.76 -0.01 2.49 16 3 C -0.13 -2.16 8.85 71.98 0.64 -1.52 16 4 C 0.03 0.71 4.34 86.32 0.37 1.09 16 5 N -0.53 -16.43 3.83 -899.78 -3.45 -19.88 16 6 C 0.05 1.66 5.45 85.56 0.47 2.13 16 7 C 0.45 20.13 7.49 87.66 0.66 20.78 16 8 O -0.60 -32.92 13.93 -3.08 -0.04 -32.97 16 9 N -0.59 -27.49 5.09 -306.98 -1.56 -29.05 16 10 C -0.33 -18.94 10.16 84.04 0.85 -18.09 16 11 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 12 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 13 N -0.93 -56.14 13.96 21.66 0.30 -55.84 16 14 Si 0.96 38.32 27.74 68.60 1.90 40.23 16 15 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 16 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.23 -7.69 6.52 99.48 0.65 -7.05 16 18 C 0.03 0.99 4.58 86.31 0.39 1.39 16 19 C 0.10 3.03 2.69 30.63 0.08 3.11 16 20 H 0.05 1.81 6.49 -2.38 -0.02 1.80 16 21 C 0.09 2.25 6.71 71.98 0.48 2.73 16 22 O -0.58 -14.40 13.63 -144.67 -1.97 -16.37 16 23 O -0.38 -10.94 9.89 -144.67 -1.43 -12.37 16 24 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.40 6.12 -2.39 -0.01 1.38 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.11 1.97 8.09 -2.39 -0.02 1.95 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 33 H 0.13 3.05 8.04 -2.38 -0.02 3.03 16 34 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 35 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 3.10 5.88 -2.39 -0.01 3.09 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.40 5.44 9.12 -74.06 -0.68 4.77 16 Total: -1.00 -78.34 320.44 -1.48 -79.82 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.22 Total: 36.15 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 4.99 Total: 10.28 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.71 Total: -104.77 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -3.45 Total: -61.70 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.23 kcal Total: -78.34 -1.48 -79.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163789950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.908 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds