Wall clock time and date at job start Mon Mar 30 2020 04:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.50637 * 2 1 4 4 C 1.53100 * 109.50169 * 120.08046 * 2 1 3 5 5 N 1.47016 * 109.25566 * 176.78466 * 4 2 1 6 6 C 1.46904 * 110.99777 * 177.61143 * 5 4 2 7 7 C 1.50701 * 109.47176 * 293.63598 * 6 5 4 8 8 O 1.21295 * 119.99611 * 353.72168 * 7 6 5 9 9 N 1.34776 * 120.00308 * 173.72233 * 7 6 5 10 10 C 1.37097 * 119.99699 * 179.97438 * 9 7 6 11 11 H 1.07993 * 120.00490 * 359.72720 * 10 9 7 12 12 C 1.38955 * 119.99334 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00463 * 359.73189 * 12 10 9 14 14 Si 1.86801 * 119.99879 * 179.72583 * 12 10 9 15 15 H 1.48502 * 109.47010 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47188 * 119.99915 * 14 12 10 17 17 H 1.48499 * 109.47052 * 240.00474 * 14 12 10 18 18 C 1.47012 * 110.75400 * 301.38088 * 5 4 2 19 19 C 1.53104 * 109.25284 * 58.61854 * 18 5 4 20 20 H 1.08998 * 109.50400 * 63.08485 * 19 18 5 21 21 C 1.53000 * 109.54163 * 183.19246 * 19 18 5 22 22 O 1.42892 * 109.47384 * 184.80451 * 21 19 18 23 23 O 1.43005 * 109.50874 * 239.86228 * 2 1 3 24 24 H 1.09000 * 109.47342 * 299.92134 * 1 2 3 25 25 H 1.09007 * 109.46460 * 59.91665 * 1 2 3 26 26 H 1.08997 * 109.47452 * 179.91335 * 1 2 3 27 27 H 1.09002 * 109.46504 * 180.08431 * 3 2 1 28 28 H 1.08996 * 109.46953 * 300.07817 * 3 2 1 29 29 H 1.08995 * 109.47548 * 60.08169 * 3 2 1 30 30 H 1.09002 * 109.50940 * 56.85249 * 4 2 1 31 31 H 1.08995 * 109.50953 * 296.71899 * 4 2 1 32 32 H 1.08999 * 109.47374 * 173.64007 * 6 5 4 33 33 H 1.08999 * 109.47184 * 53.63372 * 6 5 4 34 34 H 0.96996 * 119.99795 * 359.97438 * 9 7 6 35 35 H 0.96994 * 120.00163 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.51047 * 178.54919 * 18 5 4 37 37 H 1.08996 * 109.51208 * 298.68835 * 18 5 4 38 38 H 1.09005 * 109.47511 * 304.80947 * 21 19 18 39 39 H 1.09006 * 109.47266 * 64.80300 * 21 19 18 40 40 H 0.96700 * 114.00620 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0411 -0.7233 1.2488 5 7 3.5092 -0.7879 1.2050 6 6 4.0445 -1.4259 2.4152 7 6 3.7664 -0.5501 3.6096 8 8 3.2831 0.5516 3.4544 9 7 4.0546 -0.9908 4.8502 10 6 3.8021 -0.1938 5.9367 11 1 3.3762 0.7889 5.7983 12 6 4.0988 -0.6485 7.2158 13 7 4.6166 -1.8445 7.3844 14 14 3.7618 0.4404 8.6957 15 1 3.1809 1.7289 8.2402 16 1 2.8039 -0.2405 9.6034 17 1 5.0323 0.6982 9.4201 18 6 3.9640 -1.4885 -0.0048 19 6 3.4335 -0.7574 -1.2411 20 1 3.8535 0.2477 -1.2775 21 6 3.8359 -1.5254 -2.5017 22 8 3.4380 -0.7855 -3.6576 23 8 2.0076 -0.6768 -1.1657 24 1 -0.3634 0.5126 0.8907 25 1 -0.3632 0.5152 -0.8893 26 1 -0.3634 -1.0276 -0.0016 27 1 3.1310 1.4414 -0.0015 28 1 1.6768 1.9566 -0.8893 29 1 1.6792 1.9559 0.8906 30 1 1.6331 -1.7337 1.2769 31 1 1.7272 -0.1785 2.1391 32 1 5.1205 -1.5631 2.3080 33 1 3.5668 -2.3953 2.5564 34 1 4.4408 -1.8719 4.9743 35 1 4.8240 -2.1617 8.2772 36 1 5.0536 -1.5021 -0.0298 37 1 3.5866 -2.5110 0.0031 38 1 4.9171 -1.6638 -2.5133 39 1 3.3451 -2.4986 -2.5065 40 1 3.6615 -1.2140 -4.4952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163790062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:09 Heat of formation + Delta-G solvation = -123.816505 kcal Electronic energy + Delta-G solvation = -22091.703041 eV Core-core repulsion = 18713.748312 eV Total energy + Delta-G solvation = -3377.954729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11378 -38.13950 -36.84106 -35.27648 -33.86688 -33.50429 -31.25462 -30.17556 -27.61884 -27.10653 -26.16414 -24.71756 -22.47443 -21.71419 -19.25700 -19.13306 -17.86316 -17.48538 -16.59969 -16.02712 -15.68686 -15.35588 -14.73366 -14.66838 -14.26175 -14.00521 -13.78657 -13.66631 -13.30108 -13.05727 -12.62647 -12.28309 -12.16237 -11.73436 -11.65894 -11.60179 -11.48615 -11.39537 -11.11389 -10.93507 -10.78288 -10.35173 -10.30286 -10.23772 -10.01409 -9.50436 -9.38077 -8.43416 -7.99335 -7.90797 -6.42849 -3.83567 3.15468 3.26190 3.33170 3.69172 3.70464 3.89610 4.16480 4.29632 4.90814 4.94284 5.01878 5.09208 5.15526 5.20016 5.23670 5.30498 5.34814 5.47790 5.51934 5.71320 5.75916 5.86320 5.88957 5.91389 6.08043 6.11297 6.17374 6.26213 6.29974 6.38907 6.65791 7.17650 7.23836 7.40833 7.50816 7.54453 8.05441 8.60712 9.17242 9.53404 10.05067 10.75011 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033691 B = 0.004122 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.873600 B = 6791.569947 C = 7270.117417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.117 3.883 3 C -0.161 4.161 4 C 0.031 3.969 5 N -0.509 5.509 6 C 0.046 3.954 7 C 0.444 3.556 8 O -0.575 6.575 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.025 3.975 19 C 0.094 3.906 20 H 0.077 0.923 21 C 0.086 3.914 22 O -0.564 6.564 23 O -0.370 6.370 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -2.651 -16.516 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.077 3.923 3 C -0.218 4.218 4 C -0.097 4.097 5 N -0.233 5.233 6 C -0.085 4.085 7 C 0.229 3.771 8 O -0.459 6.459 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.104 4.104 19 C 0.036 3.964 20 H 0.094 0.906 21 C 0.008 3.992 22 O -0.369 6.369 23 O -0.289 6.289 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.181 -1.174 -16.121 16.310 hybrid contribution 0.360 -1.395 0.808 1.652 sum -1.821 -2.569 -15.313 15.634 Atomic orbital electron populations 1.21719 0.92479 1.02458 1.02605 1.21554 0.94236 0.92287 0.84190 1.22189 1.02907 0.95095 1.01625 1.22913 0.87167 0.99298 1.00321 1.61750 1.09580 1.51595 1.00364 1.21892 1.00780 0.95651 0.90226 1.19698 0.85177 0.88513 0.83739 1.90503 1.48397 1.21677 1.85278 1.41880 1.55726 1.17998 1.04554 1.19746 1.39005 1.00161 0.83814 0.87839 1.25259 0.97050 0.96582 0.99064 1.69616 1.43546 1.17461 1.23732 0.85808 0.77996 0.79921 0.80677 1.19206 1.20783 1.20752 1.22691 1.00940 0.95970 0.90781 1.22038 0.82819 0.99631 0.91955 0.90557 1.22119 0.97889 0.94237 0.84949 1.86558 1.84479 1.49970 1.15851 1.88005 1.19693 1.77896 1.43348 0.90765 0.91795 0.92247 0.91129 0.93103 0.91256 0.95079 0.87326 0.89159 0.93470 0.77537 0.91935 0.89694 0.94204 0.92158 0.93006 0.77718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.85 37.16 0.33 -1.45 16 2 C 0.12 1.80 1.11 -90.57 -0.10 1.70 16 3 C -0.16 -2.52 8.17 37.16 0.30 -2.22 16 4 C 0.03 0.53 4.00 -3.71 -0.01 0.52 16 5 N -0.51 -8.67 3.79 -235.75 -0.89 -9.57 16 6 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 7 C 0.44 10.35 7.35 -10.98 -0.08 10.27 16 8 O -0.57 -15.20 14.25 5.54 0.08 -15.12 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 10 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 14 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.02 0.34 4.93 -3.71 -0.02 0.32 16 19 C 0.09 1.28 2.69 -26.68 -0.07 1.21 16 20 H 0.08 1.13 6.49 -51.93 -0.34 0.79 16 21 C 0.09 0.90 6.72 37.16 0.25 1.15 16 22 O -0.56 -6.23 13.62 -39.95 -0.54 -6.78 16 23 O -0.37 -5.76 9.89 -39.95 -0.40 -6.15 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.19 6.13 -51.93 -0.32 0.88 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 2.18 6.10 -51.93 -0.32 1.86 16 32 H 0.09 1.44 8.04 -51.93 -0.42 1.03 16 33 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.38 2.15 9.12 45.56 0.42 2.56 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -32.46 323.94 -6.35 -38.81 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.45 Total: 11.55 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.33 Total: 4.40 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.23 Total: -47.53 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.86 Total: -28.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.46 -6.35 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163790062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.006 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds