Wall clock time and date at job start Mon Mar 30 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.50637 * 2 1 4 4 C 1.53100 * 109.50169 * 120.08046 * 2 1 3 5 5 N 1.47016 * 109.25566 * 176.78466 * 4 2 1 6 6 C 1.46904 * 110.99777 * 177.61143 * 5 4 2 7 7 C 1.50701 * 109.47176 * 293.63598 * 6 5 4 8 8 O 1.21295 * 119.99611 * 353.72168 * 7 6 5 9 9 N 1.34776 * 120.00308 * 173.72233 * 7 6 5 10 10 C 1.37097 * 119.99699 * 179.97438 * 9 7 6 11 11 H 1.07993 * 120.00490 * 359.72720 * 10 9 7 12 12 C 1.38955 * 119.99334 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00463 * 359.73189 * 12 10 9 14 14 Si 1.86801 * 119.99879 * 179.72583 * 12 10 9 15 15 H 1.48502 * 109.47010 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47188 * 119.99915 * 14 12 10 17 17 H 1.48499 * 109.47052 * 240.00474 * 14 12 10 18 18 C 1.47012 * 110.75400 * 301.38088 * 5 4 2 19 19 C 1.53104 * 109.25284 * 58.61854 * 18 5 4 20 20 H 1.08998 * 109.50400 * 63.08485 * 19 18 5 21 21 C 1.53000 * 109.54163 * 183.19246 * 19 18 5 22 22 O 1.42892 * 109.47384 * 184.80451 * 21 19 18 23 23 O 1.43005 * 109.50874 * 239.86228 * 2 1 3 24 24 H 1.09000 * 109.47342 * 299.92134 * 1 2 3 25 25 H 1.09007 * 109.46460 * 59.91665 * 1 2 3 26 26 H 1.08997 * 109.47452 * 179.91335 * 1 2 3 27 27 H 1.09002 * 109.46504 * 180.08431 * 3 2 1 28 28 H 1.08996 * 109.46953 * 300.07817 * 3 2 1 29 29 H 1.08995 * 109.47548 * 60.08169 * 3 2 1 30 30 H 1.09002 * 109.50940 * 56.85249 * 4 2 1 31 31 H 1.08995 * 109.50953 * 296.71899 * 4 2 1 32 32 H 1.08999 * 109.47374 * 173.64007 * 6 5 4 33 33 H 1.08999 * 109.47184 * 53.63372 * 6 5 4 34 34 H 0.96996 * 119.99795 * 359.97438 * 9 7 6 35 35 H 0.96994 * 120.00163 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.51047 * 178.54919 * 18 5 4 37 37 H 1.08996 * 109.51208 * 298.68835 * 18 5 4 38 38 H 1.09005 * 109.47511 * 304.80947 * 21 19 18 39 39 H 1.09006 * 109.47266 * 64.80300 * 21 19 18 40 40 H 0.96700 * 114.00620 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0411 -0.7233 1.2488 5 7 3.5092 -0.7879 1.2050 6 6 4.0445 -1.4259 2.4152 7 6 3.7664 -0.5501 3.6096 8 8 3.2831 0.5516 3.4544 9 7 4.0546 -0.9908 4.8502 10 6 3.8021 -0.1938 5.9367 11 1 3.3762 0.7889 5.7983 12 6 4.0988 -0.6485 7.2158 13 7 4.6166 -1.8445 7.3844 14 14 3.7618 0.4404 8.6957 15 1 3.1809 1.7289 8.2402 16 1 2.8039 -0.2405 9.6034 17 1 5.0323 0.6982 9.4201 18 6 3.9640 -1.4885 -0.0048 19 6 3.4335 -0.7574 -1.2411 20 1 3.8535 0.2477 -1.2775 21 6 3.8359 -1.5254 -2.5017 22 8 3.4380 -0.7855 -3.6576 23 8 2.0076 -0.6768 -1.1657 24 1 -0.3634 0.5126 0.8907 25 1 -0.3632 0.5152 -0.8893 26 1 -0.3634 -1.0276 -0.0016 27 1 3.1310 1.4414 -0.0015 28 1 1.6768 1.9566 -0.8893 29 1 1.6792 1.9559 0.8906 30 1 1.6331 -1.7337 1.2769 31 1 1.7272 -0.1785 2.1391 32 1 5.1205 -1.5631 2.3080 33 1 3.5668 -2.3953 2.5564 34 1 4.4408 -1.8719 4.9743 35 1 4.8240 -2.1617 8.2772 36 1 5.0536 -1.5021 -0.0298 37 1 3.5866 -2.5110 0.0031 38 1 4.9171 -1.6638 -2.5133 39 1 3.3451 -2.4986 -2.5065 40 1 3.6615 -1.2140 -4.4952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163790062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:08 Heat of formation + Delta-G solvation = -150.643653 kcal Electronic energy + Delta-G solvation = -22092.866353 eV Core-core repulsion = 18713.748312 eV Total energy + Delta-G solvation = -3379.118041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35844 -39.90880 -37.69698 -36.68215 -35.78311 -34.64182 -33.26702 -31.34096 -29.08722 -28.29948 -27.32703 -26.52273 -23.80641 -22.77194 -20.99197 -20.38881 -19.86531 -18.36894 -17.82989 -17.55494 -16.99405 -16.57765 -16.55468 -15.91631 -15.79895 -15.35033 -15.27167 -15.02131 -14.65728 -14.25050 -13.86724 -13.74238 -13.47478 -13.30132 -13.03714 -12.95598 -12.80225 -12.72068 -12.64360 -12.40320 -12.12075 -12.10094 -11.98319 -11.47680 -11.28436 -10.91804 -10.64167 -10.21287 -9.99191 -9.29708 -8.46489 -5.94709 1.36251 1.41705 1.55572 2.05451 2.26649 2.54549 2.65908 3.20247 3.32265 3.33875 3.77701 3.93120 3.97312 4.11644 4.20187 4.23992 4.31329 4.36123 4.42618 4.51814 4.53667 4.58125 4.62896 4.73471 4.81449 4.86067 4.93747 4.98229 5.06131 5.22704 5.37842 5.41632 5.79432 5.97298 6.07774 6.28581 6.61077 6.96879 7.13709 7.56969 8.12793 8.71238 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033691 B = 0.004122 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.873600 B = 6791.569947 C = 7270.117417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.117 3.883 3 C -0.153 4.153 4 C 0.036 3.964 5 N -0.527 5.527 6 C 0.057 3.943 7 C 0.442 3.558 8 O -0.610 6.610 9 N -0.575 5.575 10 C -0.330 4.330 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.028 3.972 19 C 0.086 3.914 20 H 0.059 0.941 21 C 0.091 3.909 22 O -0.589 6.589 23 O -0.377 6.377 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.277 0.723 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -3.731 -17.523 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 C -0.211 4.211 4 C -0.092 4.092 5 N -0.252 5.252 6 C -0.073 4.073 7 C 0.229 3.771 8 O -0.496 6.496 9 N -0.212 5.212 10 C -0.459 4.459 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.100 4.100 19 C 0.028 3.972 20 H 0.077 0.923 21 C 0.013 3.987 22 O -0.397 6.397 23 O -0.297 6.297 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.699 -2.287 -17.164 17.399 hybrid contribution 0.233 -1.046 1.033 1.488 sum -1.466 -3.333 -16.131 16.537 Atomic orbital electron populations 1.21718 0.90940 1.03128 1.03208 1.21549 0.95465 0.91552 0.83663 1.22102 1.01807 0.95732 1.01434 1.22771 0.87664 0.99087 0.99695 1.61696 1.09409 1.52838 1.01244 1.21772 1.02555 0.94794 0.88218 1.20694 0.83230 0.88581 0.84620 1.90483 1.49468 1.23640 1.85994 1.41934 1.56460 1.18001 1.04833 1.19679 1.40766 1.00022 0.85469 0.90324 1.26006 0.96341 0.97839 1.01041 1.69672 1.43545 1.18329 1.24693 0.84894 0.78264 0.77948 0.77377 1.19835 1.19667 1.19640 1.22780 1.02328 0.96073 0.88843 1.22254 0.81710 0.99445 0.93775 0.92256 1.22116 0.99609 0.93586 0.83363 1.86490 1.84940 1.51056 1.17226 1.88007 1.21076 1.77707 1.42925 0.90691 0.90674 0.91546 0.92679 0.91824 0.92751 0.94687 0.90936 0.86580 0.91635 0.77084 0.91354 0.87383 0.92889 0.89254 0.92037 0.75099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.85 71.98 0.64 -2.76 16 2 C 0.12 3.57 1.11 -10.76 -0.01 3.56 16 3 C -0.15 -4.88 8.17 71.98 0.59 -4.29 16 4 C 0.04 1.24 4.00 86.31 0.35 1.58 16 5 N -0.53 -17.48 3.79 -899.77 -3.41 -20.89 16 6 C 0.06 1.99 5.45 85.56 0.47 2.46 16 7 C 0.44 20.92 7.35 87.66 0.64 21.56 16 8 O -0.61 -33.40 14.25 -3.08 -0.04 -33.45 16 9 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 10 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 11 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 14 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.03 0.68 4.93 86.32 0.43 1.10 16 19 C 0.09 2.18 2.69 30.63 0.08 2.26 16 20 H 0.06 1.70 6.49 -2.39 -0.02 1.68 16 21 C 0.09 1.62 6.72 71.98 0.48 2.11 16 22 O -0.59 -11.54 13.62 -144.47 -1.97 -13.51 16 23 O -0.38 -11.18 9.89 -144.47 -1.43 -12.61 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.90 6.13 -2.39 -0.01 1.88 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 3.02 6.10 -2.39 -0.01 3.00 16 32 H 0.12 3.43 8.04 -2.39 -0.02 3.42 16 33 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 34 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 35 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 36 H 0.11 2.15 8.09 -2.39 -0.02 2.13 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.40 3.45 9.12 -74.06 -0.68 2.78 16 Total: -1.00 -70.70 323.94 -1.58 -72.28 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.36 Total: 33.96 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 4.94 Total: 9.52 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -4.75 Total: -101.18 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -3.44 Total: -59.57 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -70.70 -1.58 -72.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163790062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.368 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds