Wall clock time and date at job start Mon Mar 30 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00199 * 2 1 4 4 C 1.50696 * 109.47561 * 270.00329 * 3 2 1 5 5 H 1.08003 * 119.99379 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00308 * 179.97438 * 4 3 2 7 7 N 1.31522 * 120.00153 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 119.99998 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47033 * 90.00025 * 8 6 4 10 10 H 1.48498 * 109.47478 * 210.00100 * 8 6 4 11 11 H 1.48500 * 109.47179 * 330.00134 * 8 6 4 12 12 C 1.34773 * 120.00137 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00508 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00051 * 359.97438 * 12 2 1 15 15 N 1.46896 * 109.47109 * 185.66676 * 14 12 2 16 16 C 1.47013 * 111.00136 * 66.19652 * 15 14 12 17 17 C 1.53106 * 109.25523 * 182.39193 * 16 15 14 18 18 O 1.43013 * 109.29256 * 303.12967 * 17 16 15 19 19 C 1.43097 * 113.69203 * 58.64541 * 18 17 16 20 20 C 1.47020 * 110.99855 * 189.83115 * 15 14 12 21 21 H 1.09001 * 109.50386 * 297.54120 * 20 15 14 22 22 C 1.52999 * 109.50565 * 57.66901 * 20 15 14 23 23 O 1.42909 * 109.47092 * 65.00206 * 22 20 15 24 24 H 1.08995 * 109.47074 * 270.00138 * 1 2 3 25 25 H 1.09001 * 109.47103 * 30.00191 * 1 2 3 26 26 H 1.09006 * 109.46867 * 149.99599 * 1 2 3 27 27 H 1.09009 * 109.46914 * 30.00020 * 3 2 1 28 28 H 1.08996 * 109.47287 * 149.99684 * 3 2 1 29 29 H 0.96995 * 119.99693 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47237 * 65.66255 * 14 12 2 31 31 H 1.09004 * 109.46878 * 305.66567 * 14 12 2 32 32 H 1.08998 * 109.50741 * 62.45695 * 16 15 14 33 33 H 1.08992 * 109.54397 * 302.34678 * 16 15 14 34 34 H 1.08994 * 109.50502 * 63.08753 * 17 16 15 35 35 H 1.09002 * 109.50406 * 183.17687 * 17 16 15 36 36 H 1.08998 * 109.49783 * 181.41391 * 19 18 17 37 37 H 1.09004 * 109.49134 * 61.30066 * 19 18 17 38 38 H 1.08999 * 109.47124 * 184.99930 * 22 20 15 39 39 H 1.09002 * 109.47492 * 305.00565 * 22 20 15 40 40 H 0.96699 * 114.00147 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4207 5 1 2.0981 1.0959 -2.2416 6 6 3.1260 2.8780 -1.6726 7 7 3.3448 3.2580 -2.9126 8 14 3.7318 3.9299 -0.2528 9 1 5.1052 3.5091 0.1241 10 1 3.7467 5.3565 -0.6648 11 1 2.8251 3.7602 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3342 -3.5855 0.1356 16 6 2.9879 -3.5626 1.4522 17 6 4.0090 -4.7009 1.5289 18 8 3.3503 -5.9444 1.2738 19 6 2.7026 -6.0012 -0.0009 20 6 1.6684 -4.8762 -0.0931 21 1 0.8979 -5.0272 0.6630 22 6 1.0295 -4.8822 -1.4833 23 8 2.0525 -4.8034 -2.4781 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8216 4.0839 -3.0897 30 1 0.8366 -2.5751 -0.9366 31 1 0.6851 -2.4876 0.8347 32 1 2.2385 -3.6927 2.2330 33 1 3.4957 -2.6082 1.5906 34 1 4.7879 -4.5418 0.7832 35 1 4.4556 -4.7228 2.5229 36 1 2.2042 -6.9640 -0.1132 37 1 3.4437 -5.8800 -0.7911 38 1 0.4616 -5.8027 -1.6182 39 1 0.3619 -4.0259 -1.5801 40 1 1.7192 -4.8030 -3.3858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168130710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:49 Heat of formation + Delta-G solvation = -101.070377 kcal Electronic energy + Delta-G solvation = -22263.495166 eV Core-core repulsion = 18886.526783 eV Total energy + Delta-G solvation = -3376.968383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12686 -38.67043 -36.86497 -35.40045 -34.69898 -32.53290 -31.66077 -29.73425 -28.16140 -26.54683 -25.94285 -24.74604 -22.56780 -22.03732 -20.05165 -18.53954 -17.50206 -17.01529 -16.91154 -16.30514 -16.05108 -15.40518 -15.20627 -15.05095 -14.53041 -14.29765 -13.88600 -13.75149 -13.53447 -13.13426 -12.70662 -12.60259 -12.32694 -12.03916 -11.95919 -11.78292 -11.49663 -11.35235 -11.00871 -10.84030 -10.54035 -10.46245 -10.18178 -10.12601 -9.55722 -9.51418 -8.95087 -8.57664 -8.20842 -7.68060 -6.07357 -4.05963 3.29503 3.34608 3.35966 3.37253 3.46617 3.84366 4.06638 4.16348 4.40560 4.68029 4.84219 4.88936 5.10420 5.15005 5.22776 5.25274 5.28214 5.31743 5.36379 5.47133 5.52511 5.65669 5.71265 5.80764 5.84260 5.98616 6.05313 6.11768 6.65989 6.88680 6.97314 7.01237 7.15252 7.35389 7.61934 7.62261 8.25832 8.48638 8.95216 9.03120 9.52938 11.06184 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.004813 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.016258 B = 5816.778761 C = 6099.967228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.509 3.491 13 O -0.519 6.519 14 C 0.035 3.965 15 N -0.502 5.502 16 C 0.016 3.984 17 C 0.066 3.934 18 O -0.391 6.391 19 C 0.074 3.926 20 C 0.049 3.951 21 H 0.058 0.942 22 C 0.081 3.919 23 O -0.552 6.552 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -16.593 6.981 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.097 3.903 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.395 6.395 14 C -0.096 4.096 15 N -0.228 5.228 16 C -0.111 4.111 17 C -0.011 4.011 18 O -0.310 6.310 19 C -0.003 4.003 20 C -0.060 4.060 21 H 0.076 0.924 22 C 0.003 3.997 23 O -0.357 6.357 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.762 -16.513 7.184 19.236 hybrid contribution -0.941 0.923 0.428 1.385 sum -7.702 -15.590 7.612 18.982 Atomic orbital electron populations 1.21635 0.81183 1.02854 1.00281 1.47854 1.06130 1.07093 1.72435 1.19641 0.92389 0.79944 0.98361 1.21327 1.36959 1.07040 0.91277 0.90801 1.24859 0.95244 0.97364 0.95562 1.69901 1.41517 1.23565 1.18656 0.86842 0.80131 0.79736 0.82905 1.19893 1.21085 1.19142 1.20099 0.88242 0.84539 0.77666 1.90651 1.13596 1.86715 1.48505 1.22128 0.94201 0.90755 1.02494 1.61765 1.29939 1.00357 1.30694 1.22925 0.97656 1.01971 0.88581 1.22652 0.94300 0.82322 1.01776 1.87942 1.70984 1.35862 1.36208 1.22567 0.94841 0.96626 0.86240 1.22427 0.96545 0.91430 0.95573 0.92422 1.22191 0.89880 0.99590 0.88037 1.86639 1.34062 1.97326 1.17630 0.93777 0.90467 0.92526 0.95318 0.94614 0.92582 0.87908 0.92886 0.94840 0.87684 0.91747 0.88617 0.88965 0.90886 0.93159 0.93119 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.14 59.85 0.61 1.88 16 2 N -0.60 -12.42 2.86 -182.95 -0.52 -12.94 16 3 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 4 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 5 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 8 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.51 10.49 7.26 -10.98 -0.08 10.41 16 13 O -0.52 -12.93 14.21 5.56 0.08 -12.85 16 14 C 0.04 0.53 3.70 -4.97 -0.02 0.52 16 15 N -0.50 -7.76 4.19 -227.77 -0.95 -8.71 16 16 C 0.02 0.24 5.30 -3.71 -0.02 0.22 16 17 C 0.07 0.90 7.01 37.21 0.26 1.16 16 18 O -0.39 -5.36 10.83 -35.23 -0.38 -5.74 16 19 C 0.07 0.91 6.14 37.20 0.23 1.14 16 20 C 0.05 0.60 2.38 -67.60 -0.16 0.44 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 C 0.08 0.83 6.44 37.16 0.24 1.07 16 23 O -0.55 -6.73 12.67 -35.23 -0.45 -7.18 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.06 0.70 6.60 -51.93 -0.34 0.35 16 27 H 0.03 0.67 7.13 -51.92 -0.37 0.30 16 28 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.10 1.44 5.21 -51.93 -0.27 1.17 16 31 H 0.05 0.68 7.92 -51.93 -0.41 0.27 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.11 1.82 6.07 -51.93 -0.32 1.50 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.01 7.46 -51.93 -0.39 0.63 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.50 5.91 -51.93 -0.31 0.19 16 40 H 0.38 2.93 9.12 45.56 0.42 3.34 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -36.59 318.63 -6.04 -42.63 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.31 Total: 1.58 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 0.59 Total: 8.52 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.70 Total: -48.82 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.75 Total: -25.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.59 -6.04 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168130710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.444 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds