Wall clock time and date at job start Mon Mar 30 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00199 * 2 1 4 4 C 1.50696 * 109.47561 * 270.00329 * 3 2 1 5 5 H 1.08003 * 119.99379 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00308 * 179.97438 * 4 3 2 7 7 N 1.31522 * 120.00153 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 119.99998 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47033 * 90.00025 * 8 6 4 10 10 H 1.48498 * 109.47478 * 210.00100 * 8 6 4 11 11 H 1.48500 * 109.47179 * 330.00134 * 8 6 4 12 12 C 1.34773 * 120.00137 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00508 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00051 * 359.97438 * 12 2 1 15 15 N 1.46896 * 109.47109 * 185.66676 * 14 12 2 16 16 C 1.47013 * 111.00136 * 66.19652 * 15 14 12 17 17 C 1.53106 * 109.25523 * 182.39193 * 16 15 14 18 18 O 1.43013 * 109.29256 * 303.12967 * 17 16 15 19 19 C 1.43097 * 113.69203 * 58.64541 * 18 17 16 20 20 C 1.47020 * 110.99855 * 189.83115 * 15 14 12 21 21 H 1.09001 * 109.50386 * 297.54120 * 20 15 14 22 22 C 1.52999 * 109.50565 * 57.66901 * 20 15 14 23 23 O 1.42909 * 109.47092 * 65.00206 * 22 20 15 24 24 H 1.08995 * 109.47074 * 270.00138 * 1 2 3 25 25 H 1.09001 * 109.47103 * 30.00191 * 1 2 3 26 26 H 1.09006 * 109.46867 * 149.99599 * 1 2 3 27 27 H 1.09009 * 109.46914 * 30.00020 * 3 2 1 28 28 H 1.08996 * 109.47287 * 149.99684 * 3 2 1 29 29 H 0.96995 * 119.99693 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47237 * 65.66255 * 14 12 2 31 31 H 1.09004 * 109.46878 * 305.66567 * 14 12 2 32 32 H 1.08998 * 109.50741 * 62.45695 * 16 15 14 33 33 H 1.08992 * 109.54397 * 302.34678 * 16 15 14 34 34 H 1.08994 * 109.50502 * 63.08753 * 17 16 15 35 35 H 1.09002 * 109.50406 * 183.17687 * 17 16 15 36 36 H 1.08998 * 109.49783 * 181.41391 * 19 18 17 37 37 H 1.09004 * 109.49134 * 61.30066 * 19 18 17 38 38 H 1.08999 * 109.47124 * 184.99930 * 22 20 15 39 39 H 1.09002 * 109.47492 * 305.00565 * 22 20 15 40 40 H 0.96699 * 114.00147 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4207 5 1 2.0981 1.0959 -2.2416 6 6 3.1260 2.8780 -1.6726 7 7 3.3448 3.2580 -2.9126 8 14 3.7318 3.9299 -0.2528 9 1 5.1052 3.5091 0.1241 10 1 3.7467 5.3565 -0.6648 11 1 2.8251 3.7602 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3342 -3.5855 0.1356 16 6 2.9879 -3.5626 1.4522 17 6 4.0090 -4.7009 1.5289 18 8 3.3503 -5.9444 1.2738 19 6 2.7026 -6.0012 -0.0009 20 6 1.6684 -4.8762 -0.0931 21 1 0.8979 -5.0272 0.6630 22 6 1.0295 -4.8822 -1.4833 23 8 2.0525 -4.8034 -2.4781 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8216 4.0839 -3.0897 30 1 0.8366 -2.5751 -0.9366 31 1 0.6851 -2.4876 0.8347 32 1 2.2385 -3.6927 2.2330 33 1 3.4957 -2.6082 1.5906 34 1 4.7879 -4.5418 0.7832 35 1 4.4556 -4.7228 2.5229 36 1 2.2042 -6.9640 -0.1132 37 1 3.4437 -5.8800 -0.7911 38 1 0.4616 -5.8027 -1.6182 39 1 0.3619 -4.0259 -1.5801 40 1 1.7192 -4.8030 -3.3858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168130710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:49 Heat of formation + Delta-G solvation = -133.389880 kcal Electronic energy + Delta-G solvation = -22264.896645 eV Core-core repulsion = 18886.526783 eV Total energy + Delta-G solvation = -3378.369861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31808 -40.07444 -37.76792 -36.77322 -36.12495 -34.69476 -32.63902 -31.30716 -29.70503 -27.54139 -27.28762 -26.11486 -23.92930 -23.51821 -21.06750 -20.05690 -19.15102 -18.39200 -18.20050 -17.48202 -17.29389 -16.87215 -16.62492 -16.03750 -16.00631 -15.77211 -15.15222 -14.88244 -14.69591 -14.49922 -14.24550 -13.90753 -13.82947 -13.63609 -13.23486 -13.12831 -12.85751 -12.67478 -12.45178 -12.39228 -12.07861 -11.93593 -11.74160 -11.49459 -11.04670 -10.83666 -10.59919 -10.45246 -9.40506 -9.25165 -8.34435 -6.39428 1.31678 1.36407 1.44447 1.81077 2.16412 2.30556 2.77436 2.91445 3.00107 3.39748 3.65909 3.80007 3.92285 4.05582 4.16528 4.19133 4.25652 4.36555 4.41375 4.45891 4.59081 4.65137 4.69999 4.73156 4.79092 4.83808 4.86393 4.94707 4.95482 5.04810 5.45654 5.61229 5.84160 5.98419 6.13556 6.24527 6.61879 6.72353 6.99128 7.21729 7.46987 8.82790 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.004813 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.016258 B = 5816.778761 C = 6099.967228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.225 3.775 4 C -0.535 4.535 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.497 3.503 13 O -0.575 6.575 14 C 0.050 3.950 15 N -0.533 5.533 16 C 0.020 3.980 17 C 0.070 3.930 18 O -0.396 6.396 19 C 0.072 3.928 20 C 0.048 3.952 21 H 0.081 0.919 22 C 0.079 3.921 23 O -0.584 6.584 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.268 0.732 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -17.621 8.978 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.103 3.897 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.285 3.715 13 O -0.455 6.455 14 C -0.080 4.080 15 N -0.259 5.259 16 C -0.108 4.108 17 C -0.007 4.007 18 O -0.315 6.315 19 C -0.005 4.005 20 C -0.060 4.060 21 H 0.098 0.902 22 C 0.001 3.999 23 O -0.391 6.391 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.050 -17.569 9.177 21.790 hybrid contribution -0.272 1.158 -0.304 1.227 sum -9.322 -16.412 8.873 20.856 Atomic orbital electron populations 1.21964 0.77640 1.03968 1.02904 1.47981 1.08429 1.05839 1.72086 1.19301 0.92673 0.82550 0.95197 1.21564 1.36774 1.06591 0.92440 0.95529 1.25870 0.95289 0.98996 0.98645 1.70057 1.42776 1.24509 1.21332 0.85692 0.79495 0.77738 0.79858 1.20377 1.19926 1.15989 1.21158 0.88025 0.86191 0.76102 1.90621 1.16277 1.87676 1.50886 1.22028 0.93762 0.87607 1.04633 1.61681 1.31178 1.01869 1.31170 1.22804 0.98120 1.00662 0.89172 1.22625 0.93559 0.82235 1.02275 1.87933 1.71085 1.35600 1.36882 1.22705 0.94506 0.98390 0.84874 1.22589 0.96727 0.89287 0.97431 0.90183 1.22344 0.89389 1.01625 0.86516 1.86597 1.35825 1.97522 1.19194 0.90207 0.91494 0.89435 0.93123 0.96553 0.92287 0.86379 0.89317 0.93010 0.90883 0.94053 0.86458 0.85893 0.93351 0.89613 0.92522 0.75927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.11 10.14 127.77 1.30 3.41 16 2 N -0.61 -24.70 2.86 -851.11 -2.43 -27.13 16 3 C 0.23 11.08 4.23 85.63 0.36 11.44 16 4 C -0.54 -31.99 9.94 25.60 0.25 -31.73 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 6 C 0.01 0.59 5.47 84.65 0.46 1.05 16 7 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 8 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 12 C 0.50 20.38 7.26 87.66 0.64 21.01 16 13 O -0.58 -29.66 14.21 -3.03 -0.04 -29.71 16 14 C 0.05 1.41 3.70 85.56 0.32 1.73 16 15 N -0.53 -15.74 4.19 -874.53 -3.66 -19.40 16 16 C 0.02 0.59 5.30 86.32 0.46 1.04 16 17 C 0.07 1.86 7.01 72.02 0.50 2.37 16 18 O -0.40 -10.22 10.83 -148.98 -1.61 -11.83 16 19 C 0.07 1.62 6.14 72.01 0.44 2.06 16 20 C 0.05 1.02 2.38 44.92 0.11 1.13 16 21 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 22 C 0.08 1.37 6.44 71.98 0.46 1.84 16 23 O -0.58 -13.54 12.67 -148.98 -1.89 -15.42 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 26 H 0.09 1.83 6.60 -2.38 -0.02 1.82 16 27 H 0.05 2.27 7.13 -2.38 -0.02 2.25 16 28 H 0.02 0.87 6.85 -2.39 -0.02 0.85 16 29 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 30 H 0.12 2.97 5.21 -2.39 -0.01 2.96 16 31 H 0.09 1.89 7.92 -2.38 -0.02 1.87 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 2.59 6.07 -2.39 -0.01 2.58 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.33 7.46 -2.39 -0.02 1.31 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.91 5.91 -2.39 -0.01 0.89 16 40 H 0.39 5.68 9.12 -74.06 -0.68 5.00 16 Total: -1.00 -84.25 318.63 -1.84 -86.09 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.31 Total: 15.58 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 5.30 Total: 15.34 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -5.79 Total: -106.94 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -3.54 Total: -56.96 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -84.25 -1.84 -86.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168130710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.300 kcal (2) G-P(sol) polarization free energy of solvation -84.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds