Wall clock time and date at job start Mon Mar 30 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00030 * 2 1 4 4 C 1.46898 * 111.00115 * 123.95614 * 2 1 3 5 5 C 1.53120 * 109.52244 * 174.99801 * 4 2 1 6 6 C 1.53039 * 109.27940 * 177.62306 * 5 4 2 7 7 N 1.46844 * 109.52178 * 300.81941 * 6 5 4 8 8 C 1.46901 * 111.00526 * 185.84060 * 7 6 5 9 9 C 1.52992 * 109.47859 * 170.00090 * 8 7 6 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 S 1.81002 * 109.47326 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00092 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00019 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99810 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00234 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99664 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47231 * 60.00264 * 16 14 12 18 18 H 1.48505 * 109.47271 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47260 * 299.99689 * 16 14 12 20 20 C 1.46848 * 111.20087 * 61.74385 * 7 6 5 21 21 C 1.53048 * 109.52064 * 298.25789 * 20 7 6 22 22 H 1.09002 * 109.46650 * 296.04297 * 1 2 3 23 23 H 1.08994 * 109.47470 * 56.04411 * 1 2 3 24 24 H 1.08997 * 109.47009 * 176.05155 * 1 2 3 25 25 H 1.09003 * 109.46722 * 183.95690 * 3 2 1 26 26 H 1.08998 * 109.47300 * 303.95202 * 3 2 1 27 27 H 1.08996 * 109.47110 * 63.95651 * 3 2 1 28 28 H 1.09002 * 109.52734 * 54.87342 * 4 2 1 29 29 H 1.09004 * 109.50479 * 57.67894 * 5 4 2 30 30 H 1.08996 * 109.53552 * 297.58055 * 5 4 2 31 31 H 1.09003 * 109.46575 * 180.80459 * 6 5 4 32 32 H 1.08995 * 109.45502 * 60.82603 * 6 5 4 33 33 H 1.09002 * 109.46980 * 49.99749 * 8 7 6 34 34 H 1.09001 * 109.46628 * 290.00171 * 8 7 6 35 35 H 1.09002 * 109.47103 * 59.99734 * 9 8 7 36 36 H 1.08998 * 109.46862 * 300.00546 * 9 8 7 37 37 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 38 38 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 39 39 H 0.97005 * 119.99806 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.46339 * 58.26808 * 20 7 6 41 41 H 1.08994 * 109.46869 * 178.24483 * 20 7 6 42 42 H 1.08998 * 109.49998 * 299.23732 * 21 20 7 43 43 H 1.08994 * 109.50211 * 179.11499 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5210 -0.8494 1.0361 6 6 4.0683 -1.5970 2.2541 7 7 3.6794 -0.8887 3.4802 8 6 4.3029 -1.4997 4.6617 9 6 4.0821 -0.5988 5.8784 10 6 4.7310 -1.2356 7.1090 11 16 4.4705 -0.1694 8.5483 12 6 5.2947 -1.1169 9.7842 13 1 5.7615 -2.0553 9.5233 14 6 5.3449 -0.6569 11.0927 15 7 4.7773 0.4874 11.4103 16 14 6.2193 -1.6612 12.4028 17 1 7.6460 -1.8301 12.0269 18 1 6.1307 -0.9572 13.7074 19 1 5.5758 -2.9947 12.5159 20 6 2.2188 -0.8375 3.6233 21 6 1.6163 -0.0671 2.4461 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8523 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5742 -1.7713 1.1261 29 1 3.9395 0.1567 1.0084 30 1 3.7972 -1.3836 0.1270 31 1 5.1555 -1.6457 2.1922 32 1 3.6600 -2.6074 2.2735 33 1 5.3722 -1.6192 4.4873 34 1 3.8535 -2.4755 4.8458 35 1 3.0128 -0.4793 6.0528 36 1 4.5314 0.3770 5.6942 37 1 5.8003 -1.3555 6.9349 38 1 4.2812 -2.2113 7.2929 39 1 4.8121 0.8087 12.3249 40 1 1.8193 -1.8515 3.6363 41 1 1.9625 -0.3344 4.5557 42 1 2.0047 0.9512 2.4406 43 1 0.5310 -0.0428 2.5444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173865959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:51 Heat of formation + Delta-G solvation = -6.393149 kcal Electronic energy + Delta-G solvation = -18919.573150 eV Core-core repulsion = 16125.296245 eV Total energy + Delta-G solvation = -2794.276904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86526 -37.21168 -33.78249 -32.41725 -31.02625 -30.86015 -27.87555 -26.32705 -25.51027 -24.11760 -23.44292 -21.71602 -20.56863 -19.46307 -17.45127 -16.49136 -15.71889 -15.50653 -15.03852 -14.79180 -14.70979 -14.63146 -14.12005 -14.02746 -13.52425 -13.38887 -12.81847 -12.51673 -12.40655 -12.21314 -11.98674 -11.85765 -11.64461 -11.33823 -11.15927 -11.08531 -11.04445 -10.88453 -10.79841 -10.59668 -10.47592 -10.19953 -9.51251 -9.03881 -8.50318 -8.30965 -8.27844 -6.51033 -6.21264 -3.91397 3.22315 3.23963 3.28480 3.54625 3.69399 3.93655 4.24240 4.55767 4.64660 4.84295 4.96961 5.01641 5.11659 5.14537 5.17464 5.24748 5.30272 5.33265 5.37596 5.40470 5.50565 5.51688 5.59892 5.60779 5.71962 5.73470 5.77758 5.83674 5.89253 5.95598 5.99079 6.13590 6.16082 6.37460 6.61953 6.75227 6.79438 6.80391 7.11053 7.13288 7.61520 8.37808 9.24810 10.86895 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.002820 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.949355 B = 9925.129772 C =10202.023086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.016 3.984 4 C 0.082 3.918 5 C -0.108 4.108 6 C 0.056 3.944 7 N -0.538 5.538 8 C 0.061 3.939 9 C -0.093 4.093 10 C -0.112 4.112 11 S -0.133 6.133 12 C -0.516 4.516 13 H 0.071 0.929 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.057 3.943 21 C -0.150 4.150 22 H 0.030 0.970 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.268 0.732 40 H 0.031 0.969 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -2.123 -22.210 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.132 4.132 4 C -0.026 4.026 5 C -0.146 4.146 6 C -0.072 4.072 7 N -0.262 5.262 8 C -0.068 4.068 9 C -0.132 4.132 10 C -0.262 4.262 11 S 0.095 5.905 12 C -0.665 4.665 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.506 5.506 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.072 4.072 21 C -0.189 4.189 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.404 -0.740 -22.459 23.366 hybrid contribution 0.557 -2.238 1.643 2.832 sum -5.847 -2.979 -20.816 21.826 Atomic orbital electron populations 1.22397 0.87675 1.02104 1.00596 1.62269 1.07716 1.14160 1.42210 1.22484 1.01241 0.88925 1.00550 1.21808 0.95744 0.97210 0.87846 1.21654 0.93907 1.01833 0.97199 1.22064 1.00503 0.94961 0.89692 1.61925 1.08397 1.53669 1.02255 1.22165 0.99250 0.95752 0.89648 1.21283 1.01107 0.99220 0.91607 1.23234 1.01958 1.02234 0.98739 1.84623 1.74513 1.31434 0.99898 1.22652 1.40364 1.08787 0.94662 0.91047 1.25012 0.95502 0.95363 0.97927 1.70016 1.41939 1.19047 1.19577 0.86229 0.79844 0.79738 0.79736 1.19926 1.20818 1.19972 1.22061 0.87470 0.98694 0.98972 1.22269 1.00095 1.01190 0.95350 0.95171 0.91556 0.91575 0.90904 0.91796 0.94850 0.90467 0.90776 0.90976 0.90500 0.95108 0.90803 0.95041 0.91763 0.90800 0.92137 0.92405 0.92272 0.95114 0.89869 0.90535 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.54 -4.87 5.01 -243.03 -1.22 -6.08 16 3 C 0.02 0.13 8.82 60.06 0.53 0.66 16 4 C 0.08 0.77 2.29 -67.59 -0.16 0.62 16 5 C -0.11 -1.01 5.24 -26.65 -0.14 -1.15 16 6 C 0.06 0.59 5.46 -3.83 -0.02 0.56 16 7 N -0.54 -6.66 4.66 -234.67 -1.09 -7.75 16 8 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 9 C -0.09 -1.56 5.15 -26.74 -0.14 -1.70 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 12 C -0.52 -14.98 9.50 30.94 0.29 -14.68 16 13 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 16 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.06 0.66 5.29 -3.83 -0.02 0.64 16 21 C -0.15 -1.51 4.69 -26.65 -0.12 -1.63 16 22 H 0.03 0.23 6.51 -51.93 -0.34 -0.11 16 23 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.60 6.28 -51.93 -0.33 0.28 16 26 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.03 0.29 6.23 -51.93 -0.32 -0.04 16 28 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.74 6.32 -51.93 -0.33 0.41 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.76 8.02 -51.93 -0.42 0.35 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 42 H 0.08 0.84 6.27 -51.93 -0.33 0.51 16 43 H 0.06 0.62 6.66 -51.93 -0.35 0.27 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -30.70 339.59 -10.57 -41.27 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.67 Total: -2.59 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 0.88 Total: -15.30 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -1.58 Total: -39.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.70 -10.57 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173865959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.878 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds