Wall clock time and date at job start Mon Mar 30 2020 05:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00030 * 2 1 4 4 C 1.46898 * 111.00115 * 123.95614 * 2 1 3 5 5 C 1.53120 * 109.52244 * 174.99801 * 4 2 1 6 6 C 1.53039 * 109.27940 * 177.62306 * 5 4 2 7 7 N 1.46844 * 109.52178 * 300.81941 * 6 5 4 8 8 C 1.46901 * 111.00526 * 185.84060 * 7 6 5 9 9 C 1.52992 * 109.47859 * 170.00090 * 8 7 6 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 S 1.81002 * 109.47326 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00092 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00019 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99810 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00234 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99664 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47231 * 60.00264 * 16 14 12 18 18 H 1.48505 * 109.47271 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47260 * 299.99689 * 16 14 12 20 20 C 1.46848 * 111.20087 * 61.74385 * 7 6 5 21 21 C 1.53048 * 109.52064 * 298.25789 * 20 7 6 22 22 H 1.09002 * 109.46650 * 296.04297 * 1 2 3 23 23 H 1.08994 * 109.47470 * 56.04411 * 1 2 3 24 24 H 1.08997 * 109.47009 * 176.05155 * 1 2 3 25 25 H 1.09003 * 109.46722 * 183.95690 * 3 2 1 26 26 H 1.08998 * 109.47300 * 303.95202 * 3 2 1 27 27 H 1.08996 * 109.47110 * 63.95651 * 3 2 1 28 28 H 1.09002 * 109.52734 * 54.87342 * 4 2 1 29 29 H 1.09004 * 109.50479 * 57.67894 * 5 4 2 30 30 H 1.08996 * 109.53552 * 297.58055 * 5 4 2 31 31 H 1.09003 * 109.46575 * 180.80459 * 6 5 4 32 32 H 1.08995 * 109.45502 * 60.82603 * 6 5 4 33 33 H 1.09002 * 109.46980 * 49.99749 * 8 7 6 34 34 H 1.09001 * 109.46628 * 290.00171 * 8 7 6 35 35 H 1.09002 * 109.47103 * 59.99734 * 9 8 7 36 36 H 1.08998 * 109.46862 * 300.00546 * 9 8 7 37 37 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 38 38 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 39 39 H 0.97005 * 119.99806 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.46339 * 58.26808 * 20 7 6 41 41 H 1.08994 * 109.46869 * 178.24483 * 20 7 6 42 42 H 1.08998 * 109.49998 * 299.23732 * 21 20 7 43 43 H 1.08994 * 109.50211 * 179.11499 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5210 -0.8494 1.0361 6 6 4.0683 -1.5970 2.2541 7 7 3.6794 -0.8887 3.4802 8 6 4.3029 -1.4997 4.6617 9 6 4.0821 -0.5988 5.8784 10 6 4.7310 -1.2356 7.1090 11 16 4.4705 -0.1694 8.5483 12 6 5.2947 -1.1169 9.7842 13 1 5.7615 -2.0553 9.5233 14 6 5.3449 -0.6569 11.0927 15 7 4.7773 0.4874 11.4103 16 14 6.2193 -1.6612 12.4028 17 1 7.6460 -1.8301 12.0269 18 1 6.1307 -0.9572 13.7074 19 1 5.5758 -2.9947 12.5159 20 6 2.2188 -0.8375 3.6233 21 6 1.6163 -0.0671 2.4461 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8523 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5742 -1.7713 1.1261 29 1 3.9395 0.1567 1.0084 30 1 3.7972 -1.3836 0.1270 31 1 5.1555 -1.6457 2.1922 32 1 3.6600 -2.6074 2.2735 33 1 5.3722 -1.6192 4.4873 34 1 3.8535 -2.4755 4.8458 35 1 3.0128 -0.4793 6.0528 36 1 4.5314 0.3770 5.6942 37 1 5.8003 -1.3555 6.9349 38 1 4.2812 -2.2113 7.2929 39 1 4.8121 0.8087 12.3249 40 1 1.8193 -1.8515 3.6363 41 1 1.9625 -0.3344 4.5557 42 1 2.0047 0.9512 2.4406 43 1 0.5310 -0.0428 2.5444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173865959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:50 Heat of formation + Delta-G solvation = -26.456310 kcal Electronic energy + Delta-G solvation = -18920.443154 eV Core-core repulsion = 16125.296245 eV Total energy + Delta-G solvation = -2795.146908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69183 -38.09939 -34.96780 -34.59486 -31.91337 -31.86791 -28.51065 -27.93526 -27.14649 -25.13310 -24.36120 -22.65635 -21.77367 -20.24927 -19.55131 -17.39073 -16.90076 -16.69049 -16.46002 -16.15627 -15.74886 -15.55757 -15.45841 -15.06413 -14.78190 -14.32957 -14.15347 -13.64745 -13.54102 -13.20686 -13.07621 -12.92578 -12.87545 -12.68503 -12.60906 -12.48058 -12.38722 -11.99995 -11.92998 -11.83738 -11.47539 -11.28881 -11.23438 -11.13397 -10.32717 -9.29278 -9.18495 -8.67706 -8.37703 -6.14391 1.30710 1.40489 1.47250 1.73650 2.28034 2.88502 2.96362 3.04072 3.32322 3.78338 3.80633 4.01505 4.04455 4.14060 4.27995 4.32702 4.33886 4.41069 4.49122 4.49745 4.54049 4.66032 4.67166 4.70642 4.74770 4.79687 4.80810 4.93840 4.99550 5.02519 5.07097 5.12095 5.18311 5.23753 5.29544 5.38668 5.39422 6.04038 6.11873 6.16166 6.17389 6.19451 7.04170 8.71565 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.002820 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.949355 B = 9925.129772 C =10202.023086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.547 5.547 3 C 0.017 3.983 4 C 0.086 3.914 5 C -0.102 4.102 6 C 0.057 3.943 7 N -0.546 5.546 8 C 0.071 3.929 9 C -0.081 4.081 10 C -0.087 4.087 11 S -0.200 6.200 12 C -0.539 4.539 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.908 5.908 16 Si 0.994 3.006 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.264 1.264 20 C 0.056 3.944 21 C -0.142 4.142 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.272 0.728 40 H 0.034 0.966 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -3.409 -23.260 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.270 5.270 3 C -0.131 4.131 4 C -0.022 4.022 5 C -0.140 4.140 6 C -0.071 4.071 7 N -0.271 5.271 8 C -0.058 4.058 9 C -0.120 4.120 10 C -0.236 4.236 11 S 0.029 5.971 12 C -0.687 4.687 13 H 0.091 0.909 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.816 3.184 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.189 1.189 20 C -0.072 4.072 21 C -0.181 4.181 22 H 0.046 0.954 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.042 -2.024 -23.533 24.380 hybrid contribution 0.401 -1.817 1.869 2.638 sum -5.640 -3.841 -21.663 22.713 Atomic orbital electron populations 1.22444 0.86888 1.02599 1.00914 1.62295 1.08517 1.14426 1.41750 1.22492 1.01246 0.88689 1.00675 1.21755 0.95801 0.97172 0.87512 1.21602 0.93785 1.01490 0.97105 1.22122 1.01026 0.95085 0.88882 1.61891 1.08695 1.54120 1.02435 1.21971 0.99995 0.94955 0.88876 1.21155 1.00304 0.99157 0.91387 1.23152 1.02558 1.00983 0.96924 1.84656 1.74919 1.34346 1.03212 1.23011 1.40832 1.09098 0.95720 0.90881 1.26088 0.96064 0.96515 1.00385 1.70154 1.43150 1.20805 1.20334 0.85061 0.78745 0.78140 0.76437 1.18860 1.19945 1.18903 1.22052 0.87288 0.98907 0.98970 1.22192 1.00244 1.00425 0.95234 0.95417 0.90582 0.91123 0.91005 0.90738 0.95520 0.90402 0.91355 0.89920 0.89835 0.94583 0.89977 0.94585 0.92142 0.91750 0.91777 0.92074 0.91951 0.94773 0.91446 0.91521 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 127.69 1.19 1.46 16 2 N -0.55 -8.91 5.01 -922.82 -4.62 -13.54 16 3 C 0.02 0.26 8.82 127.69 1.13 1.38 16 4 C 0.09 1.48 2.29 45.00 0.10 1.58 16 5 C -0.10 -1.72 5.24 30.65 0.16 -1.56 16 6 C 0.06 1.07 5.46 86.33 0.47 1.54 16 7 N -0.55 -12.79 4.66 -896.37 -4.17 -16.97 16 8 C 0.07 1.86 4.96 86.30 0.43 2.29 16 9 C -0.08 -2.68 5.15 30.59 0.16 -2.52 16 10 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 11 S -0.20 -10.84 21.44 -56.49 -1.21 -12.06 16 12 C -0.54 -31.52 9.50 67.95 0.65 -30.87 16 13 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 14 C 0.01 0.82 5.49 84.86 0.47 1.29 16 15 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 16 Si 0.99 44.20 29.55 68.60 2.03 46.22 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 C 0.06 1.27 5.29 86.33 0.46 1.72 16 21 C -0.14 -2.72 4.69 30.65 0.14 -2.57 16 22 H 0.03 0.39 6.51 -2.39 -0.02 0.37 16 23 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.10 6.28 -2.39 -0.01 1.08 16 26 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 27 H 0.03 0.44 6.23 -2.39 -0.01 0.42 16 28 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.07 1.25 6.32 -2.38 -0.02 1.24 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.47 8.02 -2.39 -0.02 1.45 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 2.02 7.99 -2.39 -0.02 2.00 16 34 H 0.04 0.91 8.12 -2.39 -0.02 0.90 16 35 H 0.06 2.05 6.43 -2.39 -0.02 2.03 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 1.72 6.21 -2.39 -0.01 1.70 16 42 H 0.07 1.42 6.27 -2.39 -0.01 1.41 16 43 H 0.07 1.27 6.66 -2.39 -0.02 1.25 16 Total: -1.00 -65.66 339.59 -0.98 -66.64 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.95 Total: 14.26 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 5.76 Total: -29.39 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -8.51 Total: -85.67 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -10.84 SS G_CDS: -1.21 Total: -12.06 kcal Total: -65.66 -0.98 -66.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173865959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.181 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds