Wall clock time and date at job start Mon Mar 30 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99735 * 2 1 4 4 C 1.53001 * 109.46862 * 182.85678 * 3 2 1 5 5 N 1.46907 * 109.47271 * 85.23748 * 4 3 2 6 6 C 1.46900 * 111.00188 * 156.32581 * 5 4 3 7 7 C 1.50695 * 109.47133 * 198.79537 * 6 5 4 8 8 H 1.07999 * 120.00341 * 4.33545 * 7 6 5 9 9 C 1.37879 * 120.00104 * 184.34550 * 7 6 5 10 10 N 1.31522 * 119.99464 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00135 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46958 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47246 * 119.99890 * 11 9 7 14 14 H 1.48497 * 109.47016 * 239.99752 * 11 9 7 15 15 C 1.46903 * 110.99702 * 280.28002 * 5 4 3 16 16 C 1.52999 * 112.93908 * 298.20802 * 15 5 4 17 17 C 1.50699 * 109.47237 * 283.96890 * 16 15 5 18 18 O 1.20827 * 119.99754 * 348.67722 * 17 16 15 19 19 O 1.34227 * 120.00037 * 168.67441 * 17 16 15 20 20 C 1.53937 * 113.73115 * 166.50391 * 15 5 4 21 21 N 1.47964 * 86.17939 * 221.92377 * 20 15 5 22 22 C 1.47955 * 90.76410 * 24.68822 * 21 20 15 23 23 H 1.08997 * 109.47473 * 59.99830 * 1 2 3 24 24 H 1.08998 * 109.47400 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46877 * 300.00124 * 1 2 3 26 26 H 1.08997 * 109.47169 * 62.85787 * 3 2 1 27 27 H 1.08998 * 109.47451 * 302.85388 * 3 2 1 28 28 H 1.09005 * 109.47221 * 325.23634 * 4 3 2 29 29 H 1.08997 * 109.47441 * 205.23941 * 4 3 2 30 30 H 1.09000 * 109.47000 * 318.79827 * 6 5 4 31 31 H 1.09004 * 109.47001 * 78.79129 * 6 5 4 32 32 H 0.97005 * 119.99409 * 180.02562 * 10 9 7 33 33 H 1.08992 * 109.47043 * 43.97260 * 16 15 5 34 34 H 1.09002 * 109.46540 * 163.97286 * 16 15 5 35 35 H 0.96695 * 117.00172 * 180.02562 * 19 17 16 36 36 H 1.09003 * 113.75917 * 336.23868 * 20 15 5 37 37 H 1.08991 * 113.76138 * 107.59958 * 20 15 5 38 38 H 1.00899 * 110.99783 * 271.79492 * 21 20 15 39 39 H 1.08995 * 113.76096 * 220.99388 * 22 21 20 40 40 H 1.08998 * 113.75711 * 89.63282 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5338 1.1854 -0.0719 5 7 3.9495 1.0603 -1.4754 6 6 5.3408 1.4967 -1.6532 7 6 5.5910 1.7967 -3.1086 8 1 4.7789 1.7432 -3.8185 9 6 6.8570 2.1394 -3.5342 10 7 7.8460 2.2049 -2.6697 11 14 7.1673 2.5106 -5.3384 12 1 5.8996 2.3672 -6.0984 13 1 7.6743 3.8994 -5.4779 14 1 8.1748 1.5598 -5.8732 15 6 3.7628 -0.3141 -1.9591 16 6 4.6042 -1.3359 -1.1917 17 6 6.0395 -1.2441 -1.6416 18 8 6.3251 -0.5984 -2.6221 19 8 7.0006 -1.8797 -0.9532 20 6 3.8612 -0.4511 -3.4892 21 7 2.7011 -1.3632 -3.3831 22 6 2.2864 -0.7204 -2.1166 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7296 1.8281 0.9145 27 1 1.6487 1.8642 -0.8633 28 1 3.8553 0.3035 0.4823 29 1 3.9893 2.0745 0.3641 30 1 5.5185 2.3945 -1.0613 31 1 6.0146 0.7054 -1.3242 32 1 8.7365 2.4463 -2.9690 33 1 4.5441 -1.1271 -0.1236 34 1 4.2254 -2.3390 -1.3877 35 1 7.9064 -1.7912 -1.2799 36 1 3.6462 0.4721 -4.0275 37 1 4.7745 -0.9397 -3.8286 38 1 3.0015 -2.3134 -3.2249 39 1 1.9414 -1.4242 -1.3593 40 1 1.6107 0.1239 -2.2534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225740022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:43 Heat of formation + Delta-G solvation = -52.731034 kcal Electronic energy + Delta-G solvation = -23681.968296 eV Core-core repulsion = 20307.096065 eV Total energy + Delta-G solvation = -3374.872231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66899 -38.64552 -37.48700 -35.43484 -34.90263 -32.41282 -30.08691 -29.26675 -26.66877 -25.89319 -25.01945 -24.59645 -22.05585 -21.31753 -20.82827 -18.03503 -17.17015 -16.54881 -16.28210 -16.07199 -15.90755 -15.66760 -15.17455 -14.70134 -14.36408 -14.18157 -13.55183 -12.95778 -12.59451 -12.31117 -12.15517 -11.99659 -11.89632 -11.81661 -11.64339 -11.45038 -11.12723 -10.94255 -10.76631 -10.59577 -10.50024 -10.19218 -9.69025 -9.44702 -9.32154 -9.17118 -8.95139 -8.23691 -7.90072 -7.24894 -5.82626 -3.75571 3.09980 3.42191 3.49226 3.54062 3.69070 3.99330 4.56955 4.78285 4.86402 5.17483 5.18424 5.32442 5.39208 5.46288 5.55004 5.58408 5.63783 5.70570 5.76800 5.87268 6.02345 6.09754 6.21886 6.32191 6.43034 6.53720 6.65166 6.74746 7.03650 7.24248 7.29765 7.36328 7.46507 7.89580 7.97493 8.15678 8.27837 8.66579 8.76019 9.22968 9.84048 11.29981 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.007627 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.060067 B = 3670.369847 C = 3953.023053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.065 3.935 4 C 0.045 3.955 5 N -0.515 5.515 6 C 0.179 3.821 7 C -0.464 4.464 8 H 0.063 0.937 9 C 0.065 3.935 10 N -0.902 5.902 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.065 3.935 16 C -0.120 4.120 17 C 0.437 3.563 18 O -0.416 6.416 19 O -0.539 6.539 20 C 0.056 3.944 21 N -0.681 5.681 22 C 0.057 3.943 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.253 0.747 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.319 0.681 39 H 0.074 0.926 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 -7.143 6.296 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.011 4.011 4 C -0.084 4.084 5 N -0.239 5.239 6 C 0.055 3.945 7 C -0.503 4.503 8 H 0.081 0.919 9 C -0.134 4.134 10 N -0.543 5.543 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.216 1.216 15 C -0.028 4.028 16 C -0.160 4.160 17 C 0.276 3.724 18 O -0.297 6.297 19 O -0.352 6.352 20 C -0.073 4.073 21 N -0.309 5.309 22 C -0.073 4.073 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.780 -6.537 5.244 13.654 hybrid contribution 2.074 -0.155 0.322 2.105 sum -8.706 -6.693 5.566 12.311 Atomic orbital electron populations 1.22636 0.82167 1.02108 0.99663 1.88020 1.18822 1.28559 1.95101 1.22713 0.94406 0.84249 0.99767 1.22189 0.93030 1.01083 0.92057 1.62721 1.27530 1.18478 1.15203 1.20227 0.81103 0.94959 0.98197 1.20980 0.93840 1.42844 0.92592 0.91872 1.24754 0.96124 0.95939 0.96625 1.69948 1.00562 1.50315 1.33500 0.86618 0.78091 0.77214 0.86434 1.19841 1.21714 1.21559 1.23955 0.94536 0.87622 0.96670 1.21598 0.89452 1.01840 1.03122 1.23134 0.88203 0.77391 0.83710 1.91107 1.82294 1.32060 1.24281 1.84427 1.20970 1.70695 1.59137 1.23979 0.92421 0.97525 0.93352 1.65324 1.28633 1.04851 1.32076 1.23827 0.94535 0.98851 0.90074 0.94093 0.90233 0.94740 0.94030 0.91961 0.94271 0.90127 0.96910 0.96994 0.93756 0.88610 0.88989 0.73880 0.87328 0.89861 0.86788 0.90796 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.66 101.05 1.08 1.39 16 2 O -0.39 -5.14 6.27 -35.23 -0.22 -5.36 16 3 C 0.07 0.92 5.39 37.16 0.20 1.12 16 4 C 0.05 0.77 5.37 -3.82 -0.02 0.74 16 5 N -0.52 -10.44 4.31 -221.74 -0.96 -11.40 16 6 C 0.18 4.47 4.22 -4.98 -0.02 4.45 16 7 C -0.46 -12.64 6.13 -34.44 -0.21 -12.85 16 8 H 0.06 1.74 5.46 -52.49 -0.29 1.46 16 9 C 0.07 1.85 4.94 -17.82 -0.09 1.76 16 10 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 11 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 C 0.06 1.18 0.38 -133.29 -0.05 1.13 16 16 C -0.12 -2.03 5.11 -27.88 -0.14 -2.18 16 17 C 0.44 8.53 6.15 36.01 0.22 8.75 16 18 O -0.42 -9.75 9.74 -18.75 -0.18 -9.93 16 19 O -0.54 -9.21 13.42 -39.25 -0.53 -9.74 16 20 C 0.06 1.11 5.86 -2.76 -0.02 1.09 16 21 N -0.68 -11.41 8.55 -116.86 -1.00 -12.41 16 22 C 0.06 0.90 5.23 -2.77 -0.01 0.89 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.93 7.76 -51.93 -0.40 0.53 16 28 H 0.04 0.66 5.70 -51.93 -0.30 0.36 16 29 H 0.08 1.39 7.53 -51.93 -0.39 0.99 16 30 H 0.01 0.35 7.58 -51.93 -0.39 -0.04 16 31 H 0.01 0.32 3.94 -51.93 -0.20 0.12 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.10 1.58 5.93 -51.93 -0.31 1.28 16 34 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.40 5.80 9.10 45.56 0.41 6.22 16 36 H 0.11 2.46 6.18 -51.93 -0.32 2.14 16 37 H 0.08 1.79 5.85 -51.93 -0.30 1.49 16 38 H 0.32 4.74 8.19 -39.29 -0.32 4.42 16 39 H 0.07 1.08 6.62 -51.93 -0.34 0.74 16 40 H 0.10 1.61 6.68 -51.93 -0.35 1.27 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -31.36 300.69 -6.42 -37.78 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.72 Total: 8.74 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 0.93 Total: 6.31 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -1.22 Total: -49.70 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.93 Total: -25.03 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.36 -6.42 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225740022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.951 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds