Wall clock time and date at job start Mon Mar 30 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99735 * 2 1 4 4 C 1.53001 * 109.46862 * 182.85678 * 3 2 1 5 5 N 1.46907 * 109.47271 * 85.23748 * 4 3 2 6 6 C 1.46900 * 111.00188 * 156.32581 * 5 4 3 7 7 C 1.50695 * 109.47133 * 198.79537 * 6 5 4 8 8 H 1.07999 * 120.00341 * 4.33545 * 7 6 5 9 9 C 1.37879 * 120.00104 * 184.34550 * 7 6 5 10 10 N 1.31522 * 119.99464 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00135 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46958 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47246 * 119.99890 * 11 9 7 14 14 H 1.48497 * 109.47016 * 239.99752 * 11 9 7 15 15 C 1.46903 * 110.99702 * 280.28002 * 5 4 3 16 16 C 1.52999 * 112.93908 * 298.20802 * 15 5 4 17 17 C 1.50699 * 109.47237 * 283.96890 * 16 15 5 18 18 O 1.20827 * 119.99754 * 348.67722 * 17 16 15 19 19 O 1.34227 * 120.00037 * 168.67441 * 17 16 15 20 20 C 1.53937 * 113.73115 * 166.50391 * 15 5 4 21 21 N 1.47964 * 86.17939 * 221.92377 * 20 15 5 22 22 C 1.47955 * 90.76410 * 24.68822 * 21 20 15 23 23 H 1.08997 * 109.47473 * 59.99830 * 1 2 3 24 24 H 1.08998 * 109.47400 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46877 * 300.00124 * 1 2 3 26 26 H 1.08997 * 109.47169 * 62.85787 * 3 2 1 27 27 H 1.08998 * 109.47451 * 302.85388 * 3 2 1 28 28 H 1.09005 * 109.47221 * 325.23634 * 4 3 2 29 29 H 1.08997 * 109.47441 * 205.23941 * 4 3 2 30 30 H 1.09000 * 109.47000 * 318.79827 * 6 5 4 31 31 H 1.09004 * 109.47001 * 78.79129 * 6 5 4 32 32 H 0.97005 * 119.99409 * 180.02562 * 10 9 7 33 33 H 1.08992 * 109.47043 * 43.97260 * 16 15 5 34 34 H 1.09002 * 109.46540 * 163.97286 * 16 15 5 35 35 H 0.96695 * 117.00172 * 180.02562 * 19 17 16 36 36 H 1.09003 * 113.75917 * 336.23868 * 20 15 5 37 37 H 1.08991 * 113.76138 * 107.59958 * 20 15 5 38 38 H 1.00899 * 110.99783 * 271.79492 * 21 20 15 39 39 H 1.08995 * 113.76096 * 220.99388 * 22 21 20 40 40 H 1.08998 * 113.75711 * 89.63282 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5338 1.1854 -0.0719 5 7 3.9495 1.0603 -1.4754 6 6 5.3408 1.4967 -1.6532 7 6 5.5910 1.7967 -3.1086 8 1 4.7789 1.7432 -3.8185 9 6 6.8570 2.1394 -3.5342 10 7 7.8460 2.2049 -2.6697 11 14 7.1673 2.5106 -5.3384 12 1 5.8996 2.3672 -6.0984 13 1 7.6743 3.8994 -5.4779 14 1 8.1748 1.5598 -5.8732 15 6 3.7628 -0.3141 -1.9591 16 6 4.6042 -1.3359 -1.1917 17 6 6.0395 -1.2441 -1.6416 18 8 6.3251 -0.5984 -2.6221 19 8 7.0006 -1.8797 -0.9532 20 6 3.8612 -0.4511 -3.4892 21 7 2.7011 -1.3632 -3.3831 22 6 2.2864 -0.7204 -2.1166 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7296 1.8281 0.9145 27 1 1.6487 1.8642 -0.8633 28 1 3.8553 0.3035 0.4823 29 1 3.9893 2.0745 0.3641 30 1 5.5185 2.3945 -1.0613 31 1 6.0146 0.7054 -1.3242 32 1 8.7365 2.4463 -2.9690 33 1 4.5441 -1.1271 -0.1236 34 1 4.2254 -2.3390 -1.3877 35 1 7.9064 -1.7912 -1.2799 36 1 3.6462 0.4721 -4.0275 37 1 4.7745 -0.9397 -3.8286 38 1 3.0015 -2.3134 -3.2249 39 1 1.9414 -1.4242 -1.3593 40 1 1.6107 0.1239 -2.2534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225740022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:43 Heat of formation + Delta-G solvation = -79.958892 kcal Electronic energy + Delta-G solvation = -23683.148985 eV Core-core repulsion = 20307.096065 eV Total energy + Delta-G solvation = -3376.052920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16810 -40.09340 -38.56371 -36.97018 -36.44504 -34.45301 -31.43583 -30.85102 -28.20806 -27.00358 -26.51923 -26.12003 -23.68097 -22.83363 -22.33493 -19.50967 -18.69290 -18.29816 -17.89164 -17.35837 -17.26528 -16.97892 -16.70760 -16.22705 -15.75623 -15.58159 -15.08665 -14.45481 -14.11904 -13.91890 -13.72753 -13.55557 -13.36574 -13.10066 -13.01082 -12.78747 -12.75330 -12.65052 -12.39546 -12.20579 -11.89588 -11.83692 -11.41954 -11.15225 -10.98200 -10.71436 -10.39061 -10.31081 -9.35023 -8.87879 -7.98809 -5.95261 1.38361 1.41226 1.51348 1.59168 2.30005 2.51243 2.97658 3.29775 3.37271 3.47434 3.73930 3.76266 4.12432 4.25120 4.33982 4.48917 4.58260 4.61749 4.71514 4.72402 4.83813 4.89521 4.98134 5.02513 5.06066 5.06423 5.18397 5.28029 5.37698 5.42019 5.50678 5.88749 5.94938 6.27413 6.35523 6.48136 6.65082 6.76258 7.09660 7.29546 7.67293 9.13420 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.007627 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.060067 B = 3670.369847 C = 3953.023053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.078 3.922 4 C 0.043 3.957 5 N -0.525 5.525 6 C 0.195 3.805 7 C -0.457 4.457 8 H 0.055 0.945 9 C 0.019 3.981 10 N -0.932 5.932 11 Si 0.938 3.062 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.292 1.292 15 C 0.063 3.937 16 C -0.116 4.116 17 C 0.437 3.563 18 O -0.462 6.462 19 O -0.531 6.531 20 C 0.054 3.946 21 N -0.675 5.675 22 C 0.078 3.922 23 H 0.040 0.960 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.071 0.929 30 H -0.020 1.020 31 H 0.004 0.996 32 H 0.250 0.750 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.335 0.665 39 H 0.099 0.901 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -8.546 7.124 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.001 3.999 4 C -0.085 4.085 5 N -0.249 5.249 6 C 0.069 3.931 7 C -0.496 4.496 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.576 5.576 11 Si 0.766 3.234 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.218 1.218 15 C -0.029 4.029 16 C -0.155 4.155 17 C 0.278 3.722 18 O -0.347 6.347 19 O -0.345 6.345 20 C -0.075 4.075 21 N -0.304 5.304 22 C -0.051 4.051 23 H 0.059 0.941 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.089 0.911 30 H -0.002 1.002 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.274 0.726 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.733 -7.966 6.088 16.206 hybrid contribution 2.615 0.205 0.109 2.625 sum -10.118 -7.760 6.197 14.177 Atomic orbital electron populations 1.22826 0.80237 1.03538 1.00358 1.87951 1.20776 1.27766 1.95232 1.22463 0.92040 0.84917 1.00489 1.22253 0.95338 1.00951 0.89955 1.62597 1.24402 1.20262 1.17670 1.19857 0.83812 0.93253 0.96157 1.21178 0.93364 1.41332 0.93719 0.92715 1.25359 0.96269 0.96442 0.99672 1.70049 1.00701 1.51969 1.34847 0.85817 0.77789 0.76918 0.82871 1.19470 1.21322 1.21836 1.24083 0.96471 0.86975 0.95411 1.21655 0.87547 1.03152 1.03148 1.23688 0.89433 0.76248 0.82857 1.91101 1.83081 1.34183 1.26310 1.84402 1.21612 1.69966 1.58526 1.23668 0.92618 0.96790 0.94473 1.65235 1.27006 1.05292 1.32822 1.23727 0.92540 0.98896 0.89946 0.94110 0.88461 0.93361 0.91640 0.93036 0.93648 0.91068 1.00234 0.97884 0.94070 0.87627 0.85614 0.72636 0.90618 0.91731 0.85060 0.88281 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.66 113.37 1.21 1.65 16 2 O -0.40 -9.20 6.27 -148.98 -0.93 -10.13 16 3 C 0.08 2.00 5.39 71.98 0.39 2.39 16 4 C 0.04 1.42 5.37 86.30 0.46 1.88 16 5 N -0.53 -21.18 4.31 -855.45 -3.69 -24.86 16 6 C 0.19 9.92 4.22 85.56 0.36 10.28 16 7 C -0.46 -25.53 6.13 25.60 0.16 -25.38 16 8 H 0.05 3.11 5.46 -2.91 -0.02 3.09 16 9 C 0.02 1.10 4.94 84.65 0.42 1.52 16 10 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 11 Si 0.94 46.93 29.54 68.60 2.03 48.96 16 12 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 15 C 0.06 2.20 0.38 5.09 0.00 2.20 16 16 C -0.12 -3.65 5.11 29.85 0.15 -3.50 16 17 C 0.44 16.75 6.15 71.24 0.44 17.19 16 18 O -0.46 -21.93 9.74 21.96 0.21 -21.72 16 19 O -0.53 -17.53 13.42 -51.39 -0.69 -18.22 16 20 C 0.05 2.13 5.86 86.41 0.51 2.64 16 21 N -0.67 -21.16 8.55 -523.64 -4.48 -25.64 16 22 C 0.08 2.27 5.23 86.41 0.45 2.72 16 23 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.45 7.76 -2.39 -0.02 1.43 16 28 H 0.05 1.43 5.70 -2.38 -0.01 1.42 16 29 H 0.07 2.44 7.53 -2.39 -0.02 2.42 16 30 H -0.02 -1.15 7.58 -2.39 -0.02 -1.17 16 31 H 0.00 0.20 3.94 -2.38 -0.01 0.19 16 32 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 33 H 0.11 3.19 5.93 -2.39 -0.01 3.17 16 34 H 0.13 3.12 7.42 -2.39 -0.02 3.10 16 35 H 0.41 11.70 9.10 -74.06 -0.67 11.02 16 36 H 0.08 3.51 6.18 -2.39 -0.01 3.49 16 37 H 0.06 2.81 5.85 -2.39 -0.01 2.80 16 38 H 0.33 8.93 8.19 -89.69 -0.73 8.19 16 39 H 0.10 2.45 6.62 -2.39 -0.02 2.43 16 40 H 0.09 2.77 6.68 -2.39 -0.02 2.76 16 Total: -1.00 -68.69 300.69 -3.04 -71.73 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.32 Total: 22.42 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 4.55 Total: 13.60 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -7.88 Total: -106.63 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -1.41 Total: -50.08 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -68.69 -3.04 -71.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225740022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.229 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds